Wall clock time and date at job start Fri Apr 10 2020 15:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20825 * 120.00381 * 2 1 4 4 O 1.34280 * 119.99974 * 179.97438 * 2 1 3 5 5 C 1.35829 * 117.00432 * 182.57057 * 4 2 1 6 6 C 1.38961 * 119.91154 * 92.46543 * 5 4 2 7 7 C 1.37756 * 120.08964 * 179.97438 * 6 5 4 8 8 C 1.39704 * 119.91121 * 0.02562 * 7 6 5 9 9 C 1.47853 * 120.09072 * 180.02562 * 8 7 6 10 10 C 1.39953 * 119.45837 * 180.02562 * 9 8 7 11 11 C 1.36563 * 119.46740 * 180.02562 * 10 9 8 12 12 C 1.41325 * 118.42202 * 0.25101 * 11 10 9 13 13 C 1.41020 * 120.55213 * 179.72164 * 12 11 10 14 14 H 1.08004 * 120.00276 * 206.24400 * 13 12 11 15 15 C 1.40007 * 120.00208 * 26.24797 * 13 12 11 16 16 N 1.30809 * 119.99455 * 14.64834 * 15 13 12 17 17 Si 1.86798 * 120.00318 * 194.64649 * 15 13 12 18 18 H 1.48503 * 109.46709 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46759 * 119.99821 * 17 15 13 20 20 H 1.48496 * 109.47324 * 239.99977 * 17 15 13 21 21 C 1.40961 * 118.89753 * 359.50824 * 12 11 10 22 22 N 1.31262 * 120.40039 * 0.49917 * 21 12 11 23 23 C 1.39698 * 119.82240 * 0.27693 * 8 7 6 24 24 C 1.37767 * 119.90865 * 359.44402 * 23 8 7 25 25 H 1.09007 * 109.47298 * 269.99950 * 1 2 3 26 26 H 1.08996 * 109.47310 * 29.99737 * 1 2 3 27 27 H 1.09004 * 109.47374 * 150.00168 * 1 2 3 28 28 H 1.07999 * 119.95313 * 359.96474 * 6 5 4 29 29 H 1.08002 * 120.04753 * 180.02562 * 7 6 5 30 30 H 1.08004 * 120.26835 * 359.97438 * 10 9 8 31 31 H 1.08002 * 120.78914 * 179.97438 * 11 10 9 32 32 H 0.96995 * 119.99629 * 179.97438 * 16 15 13 33 33 H 1.07995 * 119.79908 * 180.25237 * 21 12 11 34 34 H 1.08005 * 120.04857 * 179.69783 * 23 8 7 35 35 H 1.08005 * 119.95374 * 180.25294 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1111 1.0463 0.0000 4 8 2.1783 -1.1629 0.0005 5 6 3.5337 -1.0925 0.0548 6 6 4.1812 -1.1348 1.2836 7 6 5.5556 -1.0642 1.3429 8 6 6.2987 -0.9494 0.1654 9 6 7.7741 -0.8739 0.2243 10 6 8.5054 -0.7586 -0.9634 11 6 9.8682 -0.6894 -0.9092 12 6 10.4946 -0.7428 0.3565 13 6 11.8994 -0.6809 0.4643 14 1 12.3961 -1.1280 1.3128 15 6 12.6501 -0.0400 -0.5285 16 7 12.0575 0.7408 -1.3947 17 14 14.4979 -0.2998 -0.6162 18 1 14.9201 -1.2217 0.4687 19 1 14.8529 -0.8893 -1.9322 20 1 15.1894 1.0044 -0.4553 21 6 9.6918 -0.8543 1.5098 22 7 8.3848 -0.9173 1.4057 23 6 5.6437 -0.9009 -1.0675 24 6 4.2691 -0.9779 -1.1186 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 3.6060 -1.2229 2.1934 29 1 6.0582 -1.0975 2.2983 30 1 7.9961 -0.7255 -1.9152 31 1 10.4536 -0.6006 -1.8124 32 1 12.5777 1.1852 -2.0823 33 1 10.1550 -0.8922 2.4846 34 1 6.2143 -0.8073 -1.9798 35 1 3.7622 -0.9445 -2.0718 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243360596.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:36 Heat of formation + Delta-G solvation = -48.001036 kcal Electronic energy + Delta-G solvation = -20289.783139 eV Core-core repulsion = 17023.791611 eV Total energy + Delta-G solvation = -3265.991528 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.24660 -40.60264 -39.32274 -37.78672 -36.05478 -33.09008 -32.82531 -31.88713 -31.39318 -30.09354 -27.24148 -24.76026 -24.44176 -22.95053 -22.74189 -21.66035 -19.43360 -19.22595 -18.12017 -17.76518 -17.69597 -17.14023 -16.49226 -15.91340 -15.45986 -15.30691 -15.24263 -14.70672 -14.53758 -14.35850 -13.91358 -13.61602 -13.57402 -13.42039 -13.31780 -13.05842 -12.98595 -12.81469 -12.56517 -12.24577 -11.79312 -11.73752 -11.60379 -11.31237 -10.33195 -10.26991 -10.02197 -10.01257 -9.05247 -8.76702 -6.48541 -0.25790 0.38352 0.83064 1.05493 1.09042 1.38583 1.48205 1.54885 1.90696 2.14398 2.55948 2.92221 3.64350 3.69150 3.70840 3.86977 3.93968 4.23420 4.33218 4.41656 4.47347 4.58501 4.67907 4.74752 4.77091 4.89164 5.01812 5.03253 5.08791 5.19361 5.28904 5.30010 5.48550 5.60960 5.72358 5.86378 5.95870 5.97169 6.40399 6.62936 6.68631 6.79534 7.60298 8.13139 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.049626 B = 0.003012 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.079696 B = 9293.152440 C = 9557.600353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.446 3.554 3 O -0.543 6.543 4 O -0.291 6.291 5 C 0.045 3.955 6 C -0.117 4.117 7 C -0.108 4.108 8 C -0.003 4.003 9 C -0.018 4.018 10 C -0.124 4.124 11 C -0.159 4.159 12 C 0.043 3.957 13 C -0.460 4.460 14 H 0.093 0.907 15 C 0.032 3.968 16 N -0.809 5.809 17 Si 0.993 3.007 18 H -0.253 1.253 19 H -0.262 1.262 20 H -0.265 1.265 21 C -0.033 4.033 22 N -0.459 5.459 23 C -0.120 4.120 24 C -0.113 4.113 25 H 0.129 0.871 26 H 0.115 0.885 27 H 0.119 0.881 28 H 0.146 0.854 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.120 0.880 32 H 0.296 0.704 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.087 -3.056 -1.257 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.293 3.707 3 O -0.432 6.432 4 O -0.206 6.206 5 C 0.004 3.996 6 C -0.135 4.135 7 C -0.127 4.127 8 C -0.004 4.004 9 C -0.152 4.152 10 C -0.144 4.144 11 C -0.185 4.185 12 C 0.039 3.961 13 C -0.488 4.488 14 H 0.111 0.889 15 C -0.186 4.186 16 N -0.433 5.433 17 Si 0.813 3.187 18 H -0.176 1.176 19 H -0.187 1.187 20 H -0.189 1.189 21 C -0.198 4.198 22 N -0.166 5.166 23 C -0.139 4.139 24 C -0.132 4.132 25 H 0.147 0.853 26 H 0.133 0.867 27 H 0.138 0.862 28 H 0.164 0.836 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.138 0.862 32 H 0.107 0.893 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.372 -2.647 -0.733 15.616 hybrid contribution 1.706 0.299 -0.799 1.907 sum -13.666 -2.348 -1.532 13.951 Atomic orbital electron populations 1.21805 0.81613 1.07698 1.07827 1.25573 0.93981 0.80554 0.70571 1.90732 1.71938 1.34125 1.46384 1.84630 1.17117 1.35343 1.83536 1.18627 0.81007 1.06172 0.93802 1.21256 0.94392 1.00488 0.97351 1.21148 0.92872 1.00059 0.98603 1.18866 0.90769 0.96715 0.94031 1.19240 0.92308 1.14462 0.89167 1.21588 0.94732 0.99786 0.98324 1.21384 0.93726 1.05086 0.98255 1.18954 0.95331 0.89326 0.92510 1.19998 0.91429 1.30134 1.07224 0.88870 1.26994 1.06924 0.91681 0.92979 1.69818 1.41190 1.19102 1.13161 0.84972 0.74452 0.79474 0.79801 1.17619 1.18669 1.18928 1.22736 0.88439 1.10785 0.97819 1.66960 1.12271 1.09645 1.27740 1.21211 0.93875 1.01388 0.97427 1.21249 0.93743 0.99892 0.98268 0.85331 0.86663 0.86213 0.83623 0.85194 0.85351 0.86203 0.89255 0.84024 0.84079 0.83431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 10.41 71.23 0.74 -0.52 16 2 C 0.45 10.37 8.01 71.23 0.57 10.94 16 3 O -0.54 -17.84 16.84 21.96 0.37 -17.47 16 4 O -0.29 -7.53 10.01 5.45 0.05 -7.48 16 5 C 0.05 1.43 4.92 22.62 0.11 1.54 16 6 C -0.12 -3.80 9.97 22.33 0.22 -3.58 16 7 C -0.11 -4.10 9.57 22.51 0.22 -3.88 16 8 C 0.00 -0.12 5.88 -20.02 -0.12 -0.24 16 9 C -0.02 -0.84 6.74 41.92 0.28 -0.55 16 10 C -0.12 -5.85 9.38 22.29 0.21 -5.64 16 11 C -0.16 -8.18 8.72 22.64 0.20 -7.98 16 12 C 0.04 2.29 5.57 -21.17 -0.12 2.17 16 13 C -0.46 -23.05 9.07 23.38 0.21 -22.84 16 14 H 0.09 4.40 7.89 -2.91 -0.02 4.37 16 15 C 0.03 1.48 5.21 85.27 0.44 1.93 16 16 N -0.81 -39.40 10.91 21.84 0.24 -39.16 16 17 Si 0.99 34.86 29.58 68.60 2.03 36.89 16 18 H -0.25 -8.63 7.11 99.48 0.71 -7.93 16 19 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 20 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 21 C -0.03 -1.69 10.97 85.45 0.94 -0.75 16 22 N -0.46 -22.96 9.38 -182.74 -1.71 -24.67 16 23 C -0.12 -4.24 9.41 22.51 0.21 -4.02 16 24 C -0.11 -3.55 9.97 22.33 0.22 -3.33 16 25 H 0.13 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 29 H 0.13 5.02 7.52 -2.91 -0.02 5.00 16 30 H 0.13 5.17 6.14 -2.91 -0.02 5.15 16 31 H 0.12 6.21 6.27 -2.91 -0.02 6.19 16 32 H 0.30 12.85 8.30 -92.71 -0.77 12.08 16 33 H 0.14 6.57 8.06 -2.91 -0.02 6.55 16 34 H 0.14 4.51 6.14 -2.91 -0.02 4.49 16 35 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -65.86 312.70 6.45 -59.41 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 1.12 Total: 29.24 kcal Atomic # 6 Polarization: -41.10 SS G_CDS: 4.34 Total: -36.76 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -1.48 Total: -63.84 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: 0.42 Total: -24.95 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 2.03 Total: 36.89 kcal Total: -65.86 6.45 -59.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243360596.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.410 kcal (2) G-P(sol) polarization free energy of solvation -65.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds