Wall clock time and date at job start Fri Apr 10 2020 15:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.20824 * 120.00154 * 2 1 4 4 O 1.34279 * 119.99964 * 179.97438 * 2 1 3 5 5 C 1.35823 * 117.00209 * 183.35806 * 4 2 1 6 6 C 1.38971 * 119.90511 * 69.85349 * 5 4 2 7 7 C 1.37739 * 120.09495 * 180.02562 * 6 5 4 8 8 C 1.39766 * 119.90426 * 359.97277 * 7 6 5 9 9 C 1.47704 * 120.09438 * 179.97438 * 8 7 6 10 10 N 1.32635 * 119.99721 * 317.18961 * 9 8 7 11 11 C 1.31726 * 121.71047 * 179.97438 * 10 9 8 12 12 C 1.38880 * 121.51773 * 0.02562 * 11 10 9 13 13 C 1.36879 * 119.80779 * 359.97438 * 12 11 10 14 14 C 1.41121 * 118.39955 * 0.26280 * 13 12 11 15 15 C 1.40855 * 120.71967 * 179.72521 * 14 13 12 16 16 H 1.07993 * 120.00209 * 145.84655 * 15 14 13 17 17 C 1.40052 * 119.99787 * 325.84760 * 15 14 13 18 18 N 1.30786 * 120.00103 * 358.37308 * 17 15 14 19 19 Si 1.86797 * 120.00002 * 178.37781 * 17 15 14 20 20 H 1.48502 * 109.47426 * 59.99667 * 19 17 15 21 21 H 1.48500 * 109.47422 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47026 * 300.00035 * 19 17 15 23 23 C 1.39770 * 119.81182 * 0.25965 * 8 7 6 24 24 C 1.37737 * 119.90405 * 359.48580 * 23 8 7 25 25 H 1.08996 * 109.47318 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47064 * 300.00804 * 1 2 3 27 27 H 1.09005 * 109.46745 * 60.00321 * 1 2 3 28 28 H 1.08003 * 119.95170 * 0.02562 * 6 5 4 29 29 H 1.08003 * 120.04915 * 180.02562 * 7 6 5 30 30 H 1.08000 * 119.24291 * 179.97438 * 11 10 9 31 31 H 1.07998 * 120.09889 * 179.97438 * 12 11 10 32 32 H 1.08000 * 120.79590 * 179.97438 * 13 12 11 33 33 H 0.97002 * 120.00043 * 180.02562 * 18 17 15 34 34 H 1.08005 * 120.05009 * 179.74898 * 23 8 7 35 35 H 1.07994 * 119.95918 * 180.23325 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1112 1.0463 0.0000 4 8 2.1784 -1.1629 0.0005 5 6 3.5330 -1.0929 0.0714 6 6 4.1447 -0.6756 1.2474 7 6 5.5180 -0.6026 1.3234 8 6 6.2966 -0.9496 0.2157 9 6 7.7696 -0.8723 0.2924 10 7 8.3497 0.1688 0.8745 11 6 9.6600 0.2719 0.9620 12 6 10.5012 -0.7062 0.4478 13 6 9.9686 -1.8076 -0.1661 14 6 8.5643 -1.9097 -0.2612 15 6 7.9643 -3.0193 -0.8879 16 1 7.0216 -3.4004 -0.5243 17 6 8.5904 -3.6283 -1.9827 18 7 9.7161 -3.1473 -2.4431 19 14 7.8176 -5.1275 -2.7855 20 1 6.4675 -4.7760 -3.2943 21 1 8.6703 -5.5795 -3.9142 22 1 7.7010 -6.2195 -1.7858 23 6 5.6772 -1.3641 -0.9666 24 6 4.3034 -1.4392 -1.0323 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 3.5423 -0.4081 2.1030 29 1 5.9926 -0.2786 2.2379 30 1 10.0900 1.1374 1.4441 31 1 11.5724 -0.5981 0.5319 32 1 10.6078 -2.5777 -0.5720 33 1 10.1496 -3.5689 -3.2016 34 1 6.2749 -1.6292 -1.8262 35 1 3.8240 -1.7629 -1.9443 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243360622.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:38 Heat of formation + Delta-G solvation = -30.769389 kcal Electronic energy + Delta-G solvation = -21046.739096 eV Core-core repulsion = 17781.494788 eV Total energy + Delta-G solvation = -3265.244307 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.99281 -38.91716 -37.72668 -36.36462 -34.19412 -31.65869 -30.83231 -30.44200 -30.25122 -28.08665 -25.75251 -23.43053 -22.44556 -21.35146 -21.23886 -20.04856 -17.97242 -17.44334 -16.77125 -16.37452 -16.14127 -15.54650 -14.66678 -14.26768 -14.15367 -14.09479 -13.61093 -13.01447 -12.96011 -12.88278 -12.72030 -12.41636 -12.21721 -11.89874 -11.56574 -11.48678 -11.34655 -11.15715 -11.09358 -10.67246 -10.54696 -10.18496 -9.96260 -9.45464 -8.60219 -8.42077 -8.17540 -8.04386 -7.34096 -6.89011 -4.61446 1.44507 1.99284 2.19470 2.53085 2.82452 2.96905 2.99853 3.08581 3.13637 3.78809 4.34938 4.53118 4.75279 5.04684 5.08467 5.34144 5.36635 5.44224 5.50061 5.56855 6.01541 6.07052 6.11682 6.19522 6.31815 6.53690 6.64167 6.70212 6.75773 6.84749 6.93909 6.99576 7.16436 7.34730 7.42332 7.62575 7.77261 7.83273 8.01339 8.30385 8.54546 8.59639 9.46174 9.99783 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.016583 B = 0.005476 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.078640 B = 5111.927352 C = 6556.829350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.447 3.553 3 O -0.496 6.496 4 O -0.292 6.292 5 C 0.051 3.949 6 C -0.127 4.127 7 C -0.097 4.097 8 C 0.031 3.969 9 C 0.014 3.986 10 N -0.455 5.455 11 C -0.022 4.022 12 C -0.152 4.152 13 C -0.119 4.119 14 C 0.087 3.913 15 C -0.445 4.445 16 H 0.087 0.913 17 C 0.072 3.928 18 N -0.798 5.798 19 Si 0.913 3.087 20 H -0.260 1.260 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.080 4.080 24 C -0.123 4.123 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.101 0.899 32 H 0.131 0.869 33 H 0.285 0.715 34 H 0.144 0.856 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.183 -0.268 1.470 11.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.291 3.709 3 O -0.382 6.382 4 O -0.208 6.208 5 C 0.010 3.990 6 C -0.145 4.145 7 C -0.116 4.116 8 C 0.030 3.970 9 C -0.124 4.124 10 N -0.162 5.162 11 C -0.184 4.184 12 C -0.173 4.173 13 C -0.145 4.145 14 C 0.082 3.918 15 C -0.475 4.475 16 H 0.105 0.895 17 C -0.146 4.146 18 N -0.423 5.423 19 Si 0.737 3.263 20 H -0.185 1.185 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.099 4.099 24 C -0.141 4.141 25 H 0.110 0.890 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.134 0.866 29 H 0.143 0.857 30 H 0.140 0.860 31 H 0.119 0.881 32 H 0.149 0.851 33 H 0.096 0.904 34 H 0.162 0.838 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.308 0.661 1.607 11.441 hybrid contribution 0.502 -1.239 -0.778 1.547 sum -10.806 -0.578 0.829 10.853 Atomic orbital electron populations 1.21562 0.86941 1.05736 1.05726 1.24248 0.92006 0.81980 0.72674 1.90733 1.70624 1.32703 1.44091 1.84589 1.18827 1.34388 1.82963 1.18508 0.79391 1.06156 0.94955 1.20968 0.95359 1.01544 0.96634 1.21093 0.91953 0.99647 0.98899 1.18561 0.91606 0.94409 0.92395 1.19561 0.91149 0.93172 1.08473 1.67073 1.12566 1.23320 1.13283 1.21737 0.88878 1.00294 1.07480 1.21503 0.99005 0.96477 1.00273 1.21543 0.95586 0.98135 0.99274 1.18360 0.91998 0.92021 0.89376 1.19515 1.06544 1.10316 1.11109 0.89497 1.25966 0.94199 0.97561 0.96870 1.69702 1.14560 1.36905 1.21154 0.86246 0.80089 0.80935 0.78994 1.18470 1.20166 1.18642 1.21378 0.92670 0.97204 0.98636 1.20886 0.93903 1.02645 0.96696 0.89013 0.87785 0.87786 0.86624 0.85659 0.85963 0.88121 0.85098 0.90427 0.83790 0.85869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 10.42 36.01 0.38 -0.72 16 2 C 0.45 6.27 7.86 36.01 0.28 6.55 16 3 O -0.50 -8.96 16.48 -18.75 -0.31 -9.27 16 4 O -0.29 -4.60 10.03 -23.34 -0.23 -4.83 16 5 C 0.05 0.93 5.28 -39.03 -0.21 0.73 16 6 C -0.13 -2.35 9.30 -39.49 -0.37 -2.71 16 7 C -0.10 -1.98 9.64 -39.19 -0.38 -2.36 16 8 C 0.03 0.70 5.30 -104.89 -0.56 0.15 16 9 C 0.01 0.34 6.44 -82.25 -0.53 -0.19 16 10 N -0.45 -11.14 10.14 -9.18 -0.09 -11.23 16 11 C -0.02 -0.51 11.16 -17.36 -0.19 -0.70 16 12 C -0.15 -3.41 10.03 -39.84 -0.40 -3.81 16 13 C -0.12 -2.93 8.70 -38.98 -0.34 -3.27 16 14 C 0.09 2.20 5.52 -106.41 -0.59 1.61 16 15 C -0.45 -10.84 6.46 -37.91 -0.24 -11.09 16 16 H 0.09 2.07 6.75 -52.49 -0.35 1.72 16 17 C 0.07 1.67 5.38 -17.32 -0.09 1.57 16 18 N -0.80 -19.14 10.82 55.55 0.60 -18.54 16 19 Si 0.91 17.56 29.56 -169.99 -5.02 12.54 16 20 H -0.26 -4.94 7.11 56.52 0.40 -4.53 16 21 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 22 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 23 C -0.08 -1.68 7.94 -39.19 -0.31 -1.99 16 24 C -0.12 -2.30 9.97 -39.49 -0.39 -2.69 16 25 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.12 1.88 8.06 -52.48 -0.42 1.46 16 29 H 0.13 2.47 8.06 -52.48 -0.42 2.04 16 30 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 31 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 32 H 0.13 3.26 6.41 -52.49 -0.34 2.92 16 33 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 34 H 0.14 3.12 6.66 -52.48 -0.35 2.77 16 35 H 0.12 2.00 8.06 -52.49 -0.42 1.57 16 LS Contribution 310.56 15.07 4.68 4.68 Total: -1.00 -29.23 310.56 -7.88 -37.10 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -3.56 Total: 8.47 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -3.94 Total: -18.93 kcal Atomic # 7 Polarization: -30.28 SS G_CDS: 0.51 Total: -29.77 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.54 Total: -14.10 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.02 Total: 12.54 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.23 -7.88 -37.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243360622.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.332 kcal (2) G-P(sol) polarization free energy of solvation -29.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds