Wall clock time and date at job start Fri Apr 10 2020 15:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86796 * 120.00121 * 2 1 4 4 H 1.48506 * 109.47297 * 240.00206 * 3 2 1 5 5 H 1.48500 * 109.47513 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47087 * 120.00635 * 3 2 1 7 7 C 1.39945 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00111 * 170.02509 * 7 2 1 9 9 C 1.41398 * 120.00096 * 350.02022 * 7 2 1 10 10 C 1.40731 * 120.24607 * 330.29920 * 9 7 2 11 11 C 1.37588 * 119.74598 * 180.02562 * 10 9 7 12 12 C 1.38659 * 120.24944 * 359.72881 * 11 10 9 13 13 C 1.38605 * 120.49981 * 0.54911 * 12 11 10 14 14 C 1.37645 * 120.24836 * 359.45237 * 13 12 11 15 15 C 1.50700 * 120.12698 * 180.29632 * 14 13 12 16 16 C 1.50704 * 109.46720 * 264.99728 * 15 14 13 17 17 O 1.21272 * 120.00267 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99592 * 180.02562 * 16 15 14 19 19 C 1.39400 * 119.99937 * 174.97549 * 18 16 15 20 20 C 1.39230 * 120.08778 * 185.30283 * 19 18 16 21 21 N 1.31955 * 119.90569 * 179.97438 * 20 19 18 22 22 C 1.32245 * 120.07385 * 0.02562 * 21 20 19 23 23 C 1.38214 * 120.17228 * 359.97438 * 22 21 20 24 24 N 1.32214 * 120.09477 * 359.73326 * 23 22 21 25 25 H 0.97002 * 119.99213 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.12416 * 0.02562 * 10 9 7 27 27 H 1.08007 * 119.87767 * 179.97438 * 11 10 9 28 28 H 1.08000 * 119.75061 * 180.30044 * 12 11 10 29 29 H 1.08000 * 119.87604 * 179.72438 * 13 12 11 30 30 H 1.08995 * 109.47296 * 24.99521 * 15 14 13 31 31 H 1.08993 * 109.47101 * 144.99840 * 15 14 13 32 32 H 0.96996 * 120.00220 * 354.96749 * 18 16 15 33 33 H 1.08004 * 120.04421 * 359.97438 * 20 19 18 34 34 H 1.08005 * 119.91512 * 180.02562 * 22 21 20 35 35 H 1.07998 * 119.95335 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2126 5 1 1.2774 2.7465 0.0006 6 1 3.0962 1.6963 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0757 -1.2191 -0.1626 9 6 1.3169 -2.4273 0.2111 10 6 0.1533 -2.4527 1.0023 11 6 -0.5107 -3.6411 1.2019 12 6 -0.0406 -4.8098 0.6224 13 6 1.1076 -4.7977 -0.1539 14 6 1.7880 -3.6203 -0.3672 15 6 3.0323 -3.6091 -1.2172 16 6 4.2462 -3.7303 -0.3323 17 8 4.1139 -3.8178 0.8700 18 7 5.4788 -3.7416 -0.8772 19 6 6.6044 -3.7480 -0.0549 20 6 7.8765 -3.6483 -0.6120 21 7 8.9394 -3.6543 0.1699 22 6 8.7973 -3.7553 1.4808 23 6 7.5360 -3.8545 2.0372 24 7 6.4661 -3.8434 1.2605 25 1 -0.4849 0.8401 0.0004 26 1 -0.2170 -1.5428 1.4510 27 1 -1.4037 -3.6631 1.8090 28 1 -0.5708 -5.7373 0.7805 29 1 1.4673 -5.7147 -0.5969 30 1 3.0047 -4.4476 -1.9129 31 1 3.0821 -2.6747 -1.7762 32 1 5.5828 -3.7453 -1.8416 33 1 7.9930 -3.5662 -1.6826 34 1 9.6691 -3.7595 2.1183 35 1 7.4240 -3.9364 3.1082 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766371359.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:21 Heat of formation + Delta-G solvation = 43.905850 kcal Electronic energy + Delta-G solvation = -21167.140116 eV Core-core repulsion = 17937.426721 eV Total energy + Delta-G solvation = -3229.713395 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.17626 -39.20838 -37.40143 -34.92740 -33.81935 -33.60401 -31.83967 -30.26190 -29.45092 -26.99448 -25.17591 -24.75523 -23.72961 -20.96397 -20.78586 -19.53920 -18.10730 -17.25359 -17.13294 -16.81728 -15.83322 -15.57279 -15.23268 -14.69198 -14.40674 -14.30540 -13.66526 -13.33522 -13.26708 -12.94879 -12.58546 -11.80414 -11.58844 -11.57762 -11.40310 -11.16102 -11.03399 -11.01379 -10.69892 -10.48635 -10.40356 -9.67358 -9.51807 -9.39852 -9.20523 -8.68355 -8.36354 -7.33917 -7.26789 -6.69885 -4.38065 0.82395 1.24142 2.71073 2.88036 3.05603 3.09088 3.15558 3.17430 3.25495 3.88479 3.93859 4.27041 4.33588 4.47864 4.68095 5.07423 5.17635 5.40310 5.41771 5.71007 5.92539 6.00403 6.08750 6.24960 6.36962 6.48666 6.60694 6.76066 7.08938 7.17936 7.27665 7.40354 7.49352 7.64261 7.88809 7.97795 8.05747 8.10714 8.29945 8.61960 8.66760 8.90775 8.99368 10.23882 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.005636 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.415016 B = 4966.926329 C = 6158.288330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.076 3.924 3 Si 0.905 3.095 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.458 4.458 8 H 0.071 0.929 9 C 0.130 3.870 10 C -0.152 4.152 11 C -0.108 4.108 12 C -0.234 4.234 13 C -0.082 4.082 14 C -0.183 4.183 15 C -0.067 4.067 16 C 0.499 3.501 17 O -0.447 6.447 18 N -0.665 5.665 19 C 0.327 3.673 20 C 0.008 3.992 21 N -0.415 5.415 22 C -0.007 4.007 23 C 0.090 3.910 24 N -0.434 5.434 25 H 0.279 0.721 26 H 0.119 0.881 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.417 0.583 33 H 0.167 0.833 34 H 0.166 0.834 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.636 -4.277 -2.879 12.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.488 4.488 8 H 0.089 0.911 9 C 0.127 3.873 10 C -0.171 4.171 11 C -0.127 4.127 12 C -0.254 4.254 13 C -0.100 4.100 14 C -0.185 4.185 15 C -0.107 4.107 16 C 0.286 3.714 17 O -0.312 6.312 18 N -0.313 5.313 19 C 0.092 3.908 20 C -0.158 4.158 21 N -0.129 5.129 22 C -0.167 4.167 23 C -0.071 4.071 24 N -0.155 5.155 25 H 0.090 0.910 26 H 0.137 0.863 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.253 0.747 33 H 0.184 0.816 34 H 0.183 0.817 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 11.164 -4.143 -2.011 12.077 hybrid contribution 0.410 0.816 -0.453 1.019 sum 11.574 -3.326 -2.464 12.292 Atomic orbital electron populations 1.69780 1.07296 1.29014 1.36695 1.25845 0.94791 1.00988 0.92468 0.86421 0.80101 0.80640 0.79860 1.19131 1.20265 1.19022 1.19406 0.95221 0.90387 1.43807 0.91072 1.17338 0.91127 0.91242 0.87553 1.21346 0.98306 0.96448 1.00994 1.20712 0.98585 0.93661 0.99708 1.20335 1.00472 0.96767 1.07797 1.20305 0.95647 0.95397 0.98659 1.19056 0.98292 0.94787 1.06363 1.20292 0.90078 1.03388 0.96904 1.21757 0.83211 0.75916 0.90549 1.90796 1.84695 1.40893 1.14840 1.44127 1.04377 1.73074 1.09709 1.19719 0.87902 0.93362 0.89812 1.23136 0.87228 1.04176 1.01268 1.68272 1.31920 1.07232 1.05469 1.23494 0.98686 1.02447 0.92059 1.23776 0.88284 0.93660 1.01365 1.68616 1.32368 1.11693 1.02789 0.90959 0.86316 0.89484 0.89570 0.89682 0.90175 0.88080 0.74681 0.81602 0.81653 0.81350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.66 10.87 55.55 0.60 -20.06 16 2 C 0.08 1.90 5.26 -17.34 -0.09 1.81 16 3 Si 0.90 19.01 29.57 -169.99 -5.03 13.98 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.46 -11.98 8.06 -37.74 -0.30 -12.28 16 8 H 0.07 1.82 6.79 -52.48 -0.36 1.47 16 9 C 0.13 3.43 5.54 -106.83 -0.59 2.84 16 10 C -0.15 -4.03 8.65 -38.88 -0.34 -4.37 16 11 C -0.11 -2.62 10.02 -39.66 -0.40 -3.02 16 12 C -0.23 -5.39 10.05 -39.29 -0.39 -5.79 16 13 C -0.08 -1.85 9.66 -39.66 -0.38 -2.24 16 14 C -0.18 -4.31 4.43 -103.91 -0.46 -4.77 16 15 C -0.07 -1.24 5.19 -29.03 -0.15 -1.39 16 16 C 0.50 9.51 7.40 -10.98 -0.08 9.43 16 17 O -0.45 -10.65 14.32 5.56 0.08 -10.57 16 18 N -0.66 -9.56 5.39 -11.32 -0.06 -9.62 16 19 C 0.33 4.96 7.43 -154.42 -1.15 3.81 16 20 C 0.01 0.10 11.09 -17.13 -0.19 -0.09 16 21 N -0.42 -5.30 10.49 -12.89 -0.14 -5.44 16 22 C -0.01 -0.08 11.21 -17.38 -0.19 -0.27 16 23 C 0.09 1.19 11.22 -17.40 -0.20 1.00 16 24 N -0.43 -7.54 8.07 -12.17 -0.10 -7.64 16 25 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 26 H 0.12 3.26 6.27 -52.49 -0.33 2.93 16 27 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 28 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 31 H 0.10 1.83 7.12 -51.93 -0.37 1.46 16 32 H 0.42 3.98 8.71 -40.82 -0.36 3.62 16 33 H 0.17 1.41 8.06 -52.48 -0.42 0.98 16 34 H 0.17 1.28 8.06 -52.48 -0.42 0.85 16 35 H 0.17 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 308.84 15.07 4.65 4.65 Total: -1.00 -33.49 308.84 -8.40 -41.89 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -3.50 Total: 8.14 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -4.92 Total: -15.32 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.31 Total: -42.76 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.49 -8.40 -41.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766371359.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.795 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds