Wall clock time and date at job start Fri Apr 10 2020 15:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86796 * 120.00121 * 2 1 4 4 H 1.48506 * 109.47297 * 240.00206 * 3 2 1 5 5 H 1.48500 * 109.47513 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47087 * 120.00635 * 3 2 1 7 7 C 1.39945 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00111 * 170.02509 * 7 2 1 9 9 C 1.41398 * 120.00096 * 350.02022 * 7 2 1 10 10 C 1.40731 * 120.24607 * 330.29920 * 9 7 2 11 11 C 1.37588 * 119.74598 * 180.02562 * 10 9 7 12 12 C 1.38659 * 120.24944 * 359.72881 * 11 10 9 13 13 C 1.38605 * 120.49981 * 0.54911 * 12 11 10 14 14 C 1.37645 * 120.24836 * 359.45237 * 13 12 11 15 15 C 1.50700 * 120.12698 * 180.29632 * 14 13 12 16 16 C 1.50704 * 109.46720 * 264.99728 * 15 14 13 17 17 O 1.21272 * 120.00267 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99592 * 180.02562 * 16 15 14 19 19 C 1.39400 * 119.99937 * 174.97549 * 18 16 15 20 20 C 1.39230 * 120.08778 * 185.30283 * 19 18 16 21 21 N 1.31955 * 119.90569 * 179.97438 * 20 19 18 22 22 C 1.32245 * 120.07385 * 0.02562 * 21 20 19 23 23 C 1.38214 * 120.17228 * 359.97438 * 22 21 20 24 24 N 1.32214 * 120.09477 * 359.73326 * 23 22 21 25 25 H 0.97002 * 119.99213 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.12416 * 0.02562 * 10 9 7 27 27 H 1.08007 * 119.87767 * 179.97438 * 11 10 9 28 28 H 1.08000 * 119.75061 * 180.30044 * 12 11 10 29 29 H 1.08000 * 119.87604 * 179.72438 * 13 12 11 30 30 H 1.08995 * 109.47296 * 24.99521 * 15 14 13 31 31 H 1.08993 * 109.47101 * 144.99840 * 15 14 13 32 32 H 0.96996 * 120.00220 * 354.96749 * 18 16 15 33 33 H 1.08004 * 120.04421 * 359.97438 * 20 19 18 34 34 H 1.08005 * 119.91512 * 180.02562 * 22 21 20 35 35 H 1.07998 * 119.95335 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2126 5 1 1.2774 2.7465 0.0006 6 1 3.0962 1.6963 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0757 -1.2191 -0.1626 9 6 1.3169 -2.4273 0.2111 10 6 0.1533 -2.4527 1.0023 11 6 -0.5107 -3.6411 1.2019 12 6 -0.0406 -4.8098 0.6224 13 6 1.1076 -4.7977 -0.1539 14 6 1.7880 -3.6203 -0.3672 15 6 3.0323 -3.6091 -1.2172 16 6 4.2462 -3.7303 -0.3323 17 8 4.1139 -3.8178 0.8700 18 7 5.4788 -3.7416 -0.8772 19 6 6.6044 -3.7480 -0.0549 20 6 7.8765 -3.6483 -0.6120 21 7 8.9394 -3.6543 0.1699 22 6 8.7973 -3.7553 1.4808 23 6 7.5360 -3.8545 2.0372 24 7 6.4661 -3.8434 1.2605 25 1 -0.4849 0.8401 0.0004 26 1 -0.2170 -1.5428 1.4510 27 1 -1.4037 -3.6631 1.8090 28 1 -0.5708 -5.7373 0.7805 29 1 1.4673 -5.7147 -0.5969 30 1 3.0047 -4.4476 -1.9129 31 1 3.0821 -2.6747 -1.7762 32 1 5.5828 -3.7453 -1.8416 33 1 7.9930 -3.5662 -1.6826 34 1 9.6691 -3.7595 2.1183 35 1 7.4240 -3.9364 3.1082 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766371359.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:20 Heat of formation + Delta-G solvation = 22.160090 kcal Electronic energy + Delta-G solvation = -21168.083083 eV Core-core repulsion = 17937.426721 eV Total energy + Delta-G solvation = -3230.656362 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.24401 -40.61801 -39.13449 -36.19404 -35.47789 -34.89698 -33.47706 -31.46667 -31.26132 -28.60414 -26.95989 -25.86061 -24.85382 -22.81984 -22.27486 -21.10258 -19.35095 -18.95792 -18.45293 -17.69785 -17.28408 -17.09983 -16.61617 -16.28194 -15.71161 -15.65945 -15.30269 -14.89432 -14.80131 -14.37155 -13.84365 -13.56229 -13.37932 -12.90985 -12.86848 -12.78842 -12.53855 -12.41734 -12.39899 -12.12346 -11.64665 -11.33800 -11.23575 -11.06739 -11.05796 -9.83323 -9.43010 -9.19841 -9.15091 -8.55816 -6.32667 -0.16530 0.21776 0.97128 1.12179 1.34002 1.43950 1.50977 1.78082 1.92695 2.18885 2.79986 2.86552 3.29415 3.41864 3.50094 3.76499 4.08310 4.21558 4.29517 4.39964 4.49107 4.56537 4.60949 4.70772 4.79747 5.03585 5.12775 5.19697 5.36680 5.54177 5.56992 5.77414 6.01832 6.11548 6.17185 6.20884 6.41420 6.49748 6.73377 6.92995 6.99124 7.10439 7.35753 8.39839 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.005636 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.415016 B = 4966.926329 C = 6158.288330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.035 3.965 3 Si 0.970 3.030 4 H -0.252 1.252 5 H -0.267 1.267 6 H -0.275 1.275 7 C -0.482 4.482 8 H 0.067 0.933 9 C 0.096 3.904 10 C -0.187 4.187 11 C -0.119 4.119 12 C -0.237 4.237 13 C -0.092 4.092 14 C -0.186 4.186 15 C -0.065 4.065 16 C 0.505 3.495 17 O -0.507 6.507 18 N -0.648 5.648 19 C 0.297 3.703 20 C 0.027 3.973 21 N -0.430 5.430 22 C 0.012 3.988 23 C 0.073 3.927 24 N -0.487 5.487 25 H 0.284 0.716 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.105 0.895 32 H 0.438 0.562 33 H 0.205 0.795 34 H 0.205 0.795 35 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.907 -4.930 -4.279 15.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.179 4.179 3 Si 0.792 3.208 4 H -0.176 1.176 5 H -0.191 1.191 6 H -0.200 1.200 7 C -0.513 4.513 8 H 0.085 0.915 9 C 0.094 3.906 10 C -0.206 4.206 11 C -0.138 4.138 12 C -0.256 4.256 13 C -0.110 4.110 14 C -0.188 4.188 15 C -0.105 4.105 16 C 0.292 3.708 17 O -0.376 6.376 18 N -0.298 5.298 19 C 0.063 3.937 20 C -0.139 4.139 21 N -0.144 5.144 22 C -0.148 4.148 23 C -0.087 4.087 24 N -0.208 5.208 25 H 0.095 0.905 26 H 0.115 0.885 27 H 0.123 0.877 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.123 0.877 32 H 0.280 0.720 33 H 0.222 0.778 34 H 0.222 0.778 35 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 13.477 -4.808 -3.465 14.722 hybrid contribution -0.213 0.883 0.020 0.909 sum 13.263 -3.925 -3.445 14.254 Atomic orbital electron populations 1.69858 1.08585 1.30009 1.37533 1.26609 0.95512 1.03954 0.91781 0.85436 0.78895 0.76764 0.79738 1.17634 1.19081 1.20001 1.19533 0.95063 0.91302 1.45379 0.91464 1.17728 0.91652 0.92798 0.88417 1.21341 0.99889 0.96652 1.02745 1.20973 0.99164 0.93541 1.00097 1.20754 1.00661 0.97325 1.06863 1.20762 0.95362 0.96472 0.98377 1.19566 0.99619 0.94055 1.05557 1.20317 0.88126 1.05378 0.96641 1.21642 0.84533 0.74956 0.89628 1.90776 1.85784 1.44055 1.17022 1.43683 1.03059 1.72230 1.10844 1.19960 0.88804 0.95394 0.89537 1.23642 0.85709 1.01595 1.02924 1.68426 1.31849 1.08014 1.06106 1.24077 0.99192 0.99374 0.92110 1.24181 0.88274 0.94113 1.02167 1.68466 1.34905 1.12891 1.04529 0.90512 0.88549 0.87724 0.86617 0.86277 0.85918 0.87744 0.72043 0.77826 0.77830 0.79545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.48 10.87 21.83 0.24 -44.24 16 2 C 0.03 1.79 5.26 85.26 0.45 2.24 16 3 Si 0.97 39.57 29.57 68.60 2.03 41.59 16 4 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 5 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.48 -26.05 8.06 23.46 0.19 -25.86 16 8 H 0.07 3.55 6.79 -2.91 -0.02 3.53 16 9 C 0.10 5.24 5.54 -21.29 -0.12 5.13 16 10 C -0.19 -10.36 8.65 22.73 0.20 -10.16 16 11 C -0.12 -5.88 10.02 22.22 0.22 -5.66 16 12 C -0.24 -10.68 10.05 22.46 0.23 -10.45 16 13 C -0.09 -4.03 9.66 22.22 0.21 -3.82 16 14 C -0.19 -8.74 4.43 -19.40 -0.09 -8.83 16 15 C -0.07 -2.34 5.19 29.10 0.15 -2.19 16 16 C 0.50 18.98 7.40 87.66 0.65 19.62 16 17 O -0.51 -24.62 14.32 -3.00 -0.04 -24.66 16 18 N -0.65 -17.63 5.39 -308.13 -1.66 -19.29 16 19 C 0.30 8.61 7.43 132.89 0.99 9.60 16 20 C 0.03 0.58 11.09 84.91 0.94 1.52 16 21 N -0.43 -9.71 10.49 -194.70 -2.04 -11.75 16 22 C 0.01 0.24 11.21 84.62 0.95 1.19 16 23 C 0.07 1.85 11.22 84.63 0.95 2.80 16 24 N -0.49 -16.82 8.07 -192.42 -1.55 -18.37 16 25 H 0.28 13.89 8.30 -92.71 -0.77 13.12 16 26 H 0.10 5.64 6.27 -2.91 -0.02 5.62 16 27 H 0.10 4.59 8.06 -2.91 -0.02 4.57 16 28 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 29 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 30 H 0.12 3.28 8.05 -2.39 -0.02 3.26 16 31 H 0.10 3.69 7.12 -2.39 -0.02 3.67 16 32 H 0.44 7.23 8.71 -92.71 -0.81 6.42 16 33 H 0.21 2.62 8.06 -2.91 -0.02 2.59 16 34 H 0.21 2.36 8.06 -2.91 -0.02 2.33 16 35 H 0.19 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -76.58 308.84 3.21 -73.37 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.33 Total: 28.23 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: 5.92 Total: -24.87 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -5.02 Total: -93.66 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.04 Total: -24.66 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.59 kcal Total: -76.58 3.21 -73.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766371359.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.530 kcal (2) G-P(sol) polarization free energy of solvation -76.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds