Wall clock time and date at job start Fri Apr 10 2020 15:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48506 * 109.47080 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46998 * 299.99384 * 3 2 1 6 6 H 1.48501 * 109.47609 * 59.99716 * 3 2 1 7 7 C 1.39940 * 120.00388 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00410 * 170.02163 * 7 2 1 9 9 C 1.41399 * 119.99491 * 350.03495 * 7 2 1 10 10 C 1.40732 * 120.24772 * 330.28426 * 9 7 2 11 11 C 1.37591 * 119.74579 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25360 * 359.72789 * 11 10 9 13 13 C 1.38617 * 120.49511 * 0.55513 * 12 11 10 14 14 C 1.37635 * 120.24740 * 359.44595 * 13 12 11 15 15 C 1.50700 * 120.12494 * 180.30067 * 14 13 12 16 16 C 1.50702 * 109.46887 * 264.99543 * 15 14 13 17 17 O 1.21278 * 120.00378 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00052 * 180.02562 * 16 15 14 19 19 C 1.39439 * 119.99973 * 174.97600 * 18 16 15 20 20 C 1.39397 * 120.14847 * 185.30190 * 19 18 16 21 21 C 1.38614 * 117.90919 * 179.97438 * 20 19 18 22 22 C 1.38780 * 118.03567 * 0.02562 * 21 20 19 23 23 N 1.31828 * 119.99472 * 359.97438 * 22 21 20 24 24 N 1.28347 * 122.27342 * 359.73007 * 23 22 21 25 25 H 0.97002 * 120.00351 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.12195 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.87411 * 179.97438 * 11 10 9 28 28 H 1.07992 * 119.75218 * 180.29532 * 12 11 10 29 29 H 1.07993 * 119.87259 * 179.71720 * 13 12 11 30 30 H 1.09000 * 109.47553 * 24.99709 * 15 14 13 31 31 H 1.09007 * 109.47284 * 145.00065 * 15 14 13 32 32 H 0.97000 * 120.00150 * 354.97643 * 18 16 15 33 33 H 1.07997 * 121.04169 * 359.94955 * 20 19 18 34 34 H 1.08000 * 120.98136 * 180.02562 * 21 20 19 35 35 H 1.07996 * 119.99832 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8834 2.3966 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0757 -1.2190 -0.1615 9 6 1.3170 -2.4271 0.2130 10 6 0.1533 -2.4519 1.0041 11 6 -0.5106 -3.6403 1.2045 12 6 -0.0406 -4.8094 0.6258 13 6 1.1077 -4.7977 -0.1505 14 6 1.7880 -3.6205 -0.3644 15 6 3.0324 -3.6098 -1.2145 16 6 4.2462 -3.7305 -0.3295 17 8 4.1140 -3.8171 0.8729 18 7 5.4789 -3.7421 -0.8743 19 6 6.6048 -3.7480 -0.0517 20 6 7.8790 -3.6485 -0.6081 21 6 8.9654 -3.6584 0.2527 22 6 8.7182 -3.7671 1.6140 23 7 7.4785 -3.8566 2.0535 24 7 6.4681 -3.8424 1.2622 25 1 -0.4851 0.8400 -0.0004 26 1 -0.2170 -1.5418 1.4522 27 1 -1.4036 -3.6618 1.8116 28 1 -0.5708 -5.7367 0.7845 29 1 1.4674 -5.7150 -0.5927 30 1 3.0048 -4.4489 -1.9097 31 1 3.0822 -2.6757 -1.7741 32 1 5.5830 -3.7464 -1.8387 33 1 8.0154 -3.5668 -1.6763 34 1 9.9746 -3.5838 -0.1248 35 1 9.5412 -3.7775 2.3131 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776934286.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:16 Heat of formation + Delta-G solvation = 53.901270 kcal Electronic energy + Delta-G solvation = -21164.626975 eV Core-core repulsion = 17935.347014 eV Total energy + Delta-G solvation = -3229.279961 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.08642 -39.20287 -37.37757 -34.98028 -33.57637 -33.05809 -31.94199 -30.68136 -29.42507 -26.98816 -25.12828 -24.74023 -23.82624 -20.97767 -20.84505 -19.48202 -17.95778 -17.30615 -17.09905 -16.73845 -15.87038 -15.57121 -15.22868 -14.55412 -14.31675 -14.12755 -13.59370 -13.30110 -13.23925 -13.23196 -12.57265 -11.77637 -11.54715 -11.46379 -11.23495 -11.12300 -10.99530 -10.85895 -10.65306 -10.35982 -10.27999 -9.64918 -9.48681 -9.35686 -9.19415 -9.02595 -8.59141 -7.30902 -7.23560 -6.67375 -4.35081 0.81514 1.03060 2.71756 2.88118 3.08718 3.13887 3.16044 3.18611 3.27005 3.79739 3.96376 4.24941 4.55288 4.59580 4.69399 4.74442 4.99294 5.30765 5.60144 5.73158 5.79681 5.95288 5.98300 6.08492 6.27847 6.38525 6.51792 6.59128 6.79157 7.11904 7.30604 7.43342 7.47918 7.68060 7.92352 8.08857 8.13872 8.32901 8.59692 8.67994 8.93849 8.97513 9.02469 10.26491 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.015178 B = 0.005652 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.387934 B = 4952.618299 C = 6138.800172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.075 3.925 3 Si 0.904 3.096 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.457 4.457 8 H 0.072 0.928 9 C 0.129 3.871 10 C -0.151 4.151 11 C -0.108 4.108 12 C -0.234 4.234 13 C -0.082 4.082 14 C -0.183 4.183 15 C -0.065 4.065 16 C 0.497 3.503 17 O -0.444 6.444 18 N -0.664 5.664 19 C 0.309 3.691 20 C -0.162 4.162 21 C -0.093 4.093 22 C -0.007 4.007 23 N -0.213 5.213 24 N -0.230 5.230 25 H 0.278 0.722 26 H 0.119 0.881 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.415 0.585 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.236 -3.957 -6.092 15.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.487 4.487 8 H 0.090 0.910 9 C 0.127 3.873 10 C -0.170 4.170 11 C -0.127 4.127 12 C -0.253 4.253 13 C -0.100 4.100 14 C -0.185 4.185 15 C -0.105 4.105 16 C 0.284 3.716 17 O -0.308 6.308 18 N -0.313 5.313 19 C 0.071 3.929 20 C -0.195 4.195 21 C -0.122 4.122 22 C -0.174 4.174 23 N -0.055 5.055 24 N -0.080 5.080 25 H 0.089 0.911 26 H 0.137 0.863 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.251 0.749 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 12.723 -3.969 -3.933 13.896 hybrid contribution 1.526 0.973 -1.818 2.566 sum 14.250 -2.996 -5.751 15.656 Atomic orbital electron populations 1.69793 1.07295 1.28779 1.36967 1.25844 0.94780 1.00996 0.92489 0.86320 0.80802 0.81393 0.78539 1.18739 1.20006 1.19731 1.19476 0.95279 0.90371 1.43599 0.90961 1.17352 0.91126 0.91266 0.87549 1.21348 0.98272 0.96467 1.00943 1.20712 0.98602 0.93657 0.99683 1.20337 1.00460 0.96759 1.07747 1.20303 0.95637 0.95383 0.98671 1.19054 0.98254 0.94808 1.06406 1.20280 0.90008 1.03354 0.96866 1.21794 0.83170 0.76033 0.90629 1.90836 1.84549 1.40661 1.14751 1.44086 1.04283 1.73391 1.09536 1.20462 0.87393 0.93320 0.91733 1.21888 0.91505 1.03992 1.02070 1.22192 1.00074 0.95971 0.94012 1.24221 0.97425 1.00521 0.95186 1.73132 0.96760 1.06258 1.29316 1.73768 1.21978 1.12312 0.99956 0.91095 0.86300 0.89473 0.89554 0.89665 0.90175 0.88084 0.74883 0.83363 0.83325 0.81452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.88 10.87 55.55 0.60 -20.28 16 2 C 0.08 1.91 5.26 -17.34 -0.09 1.82 16 3 Si 0.90 19.23 29.57 -169.99 -5.03 14.20 16 4 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.46 -12.12 8.06 -37.74 -0.30 -12.42 16 8 H 0.07 1.88 6.79 -52.49 -0.36 1.53 16 9 C 0.13 3.47 5.54 -106.82 -0.59 2.88 16 10 C -0.15 -4.07 8.65 -38.88 -0.34 -4.41 16 11 C -0.11 -2.66 10.02 -39.66 -0.40 -3.05 16 12 C -0.23 -5.46 10.05 -39.29 -0.39 -5.85 16 13 C -0.08 -1.88 9.66 -39.66 -0.38 -2.26 16 14 C -0.18 -4.38 4.43 -103.91 -0.46 -4.84 16 15 C -0.07 -1.23 5.19 -29.03 -0.15 -1.38 16 16 C 0.50 9.74 7.40 -10.98 -0.08 9.66 16 17 O -0.44 -11.01 14.33 5.56 0.08 -10.93 16 18 N -0.66 -9.75 5.39 -11.31 -0.06 -9.81 16 19 C 0.31 4.79 7.51 -154.46 -1.16 3.63 16 20 C -0.16 -1.69 10.07 -39.01 -0.39 -2.08 16 21 C -0.09 -0.85 10.20 -39.24 -0.40 -1.25 16 22 C -0.01 -0.08 11.31 -17.35 -0.20 -0.27 16 23 N -0.21 -3.66 11.49 30.57 0.35 -3.30 16 24 N -0.23 -4.50 9.08 31.29 0.28 -4.22 16 25 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 26 H 0.12 3.31 6.27 -52.49 -0.33 2.98 16 27 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 28 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 30 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 31 H 0.10 1.84 7.13 -51.92 -0.37 1.47 16 32 H 0.41 3.99 8.72 -40.82 -0.36 3.63 16 33 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 309.01 15.07 4.66 4.66 Total: -1.00 -34.88 309.01 -7.95 -42.84 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -3.50 Total: 6.68 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -5.34 Total: -19.84 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 1.18 Total: -37.61 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.88 -7.95 -42.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776934286.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.739 kcal (2) G-P(sol) polarization free energy of solvation -34.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds