Wall clock time and date at job start Fri Apr 10 2020 15:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48506 * 109.47080 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46998 * 299.99384 * 3 2 1 6 6 H 1.48501 * 109.47609 * 59.99716 * 3 2 1 7 7 C 1.39940 * 120.00388 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00410 * 170.02163 * 7 2 1 9 9 C 1.41399 * 119.99491 * 350.03495 * 7 2 1 10 10 C 1.40732 * 120.24772 * 330.28426 * 9 7 2 11 11 C 1.37591 * 119.74579 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25360 * 359.72789 * 11 10 9 13 13 C 1.38617 * 120.49511 * 0.55513 * 12 11 10 14 14 C 1.37635 * 120.24740 * 359.44595 * 13 12 11 15 15 C 1.50700 * 120.12494 * 180.30067 * 14 13 12 16 16 C 1.50702 * 109.46887 * 264.99543 * 15 14 13 17 17 O 1.21278 * 120.00378 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00052 * 180.02562 * 16 15 14 19 19 C 1.39439 * 119.99973 * 174.97600 * 18 16 15 20 20 C 1.39397 * 120.14847 * 185.30190 * 19 18 16 21 21 C 1.38614 * 117.90919 * 179.97438 * 20 19 18 22 22 C 1.38780 * 118.03567 * 0.02562 * 21 20 19 23 23 N 1.31828 * 119.99472 * 359.97438 * 22 21 20 24 24 N 1.28347 * 122.27342 * 359.73007 * 23 22 21 25 25 H 0.97002 * 120.00351 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.12195 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.87411 * 179.97438 * 11 10 9 28 28 H 1.07992 * 119.75218 * 180.29532 * 12 11 10 29 29 H 1.07993 * 119.87259 * 179.71720 * 13 12 11 30 30 H 1.09000 * 109.47553 * 24.99709 * 15 14 13 31 31 H 1.09007 * 109.47284 * 145.00065 * 15 14 13 32 32 H 0.97000 * 120.00150 * 354.97643 * 18 16 15 33 33 H 1.07997 * 121.04169 * 359.94955 * 20 19 18 34 34 H 1.08000 * 120.98136 * 180.02562 * 21 20 19 35 35 H 1.07996 * 119.99832 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8834 2.3966 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0757 -1.2190 -0.1615 9 6 1.3170 -2.4271 0.2130 10 6 0.1533 -2.4519 1.0041 11 6 -0.5106 -3.6403 1.2045 12 6 -0.0406 -4.8094 0.6258 13 6 1.1077 -4.7977 -0.1505 14 6 1.7880 -3.6205 -0.3644 15 6 3.0324 -3.6098 -1.2145 16 6 4.2462 -3.7305 -0.3295 17 8 4.1140 -3.8171 0.8729 18 7 5.4789 -3.7421 -0.8743 19 6 6.6048 -3.7480 -0.0517 20 6 7.8790 -3.6485 -0.6081 21 6 8.9654 -3.6584 0.2527 22 6 8.7182 -3.7671 1.6140 23 7 7.4785 -3.8566 2.0535 24 7 6.4681 -3.8424 1.2622 25 1 -0.4851 0.8400 -0.0004 26 1 -0.2170 -1.5418 1.4522 27 1 -1.4036 -3.6618 1.8116 28 1 -0.5708 -5.7367 0.7845 29 1 1.4674 -5.7150 -0.5927 30 1 3.0048 -4.4489 -1.9097 31 1 3.0822 -2.6757 -1.7741 32 1 5.5830 -3.7464 -1.8387 33 1 8.0154 -3.5668 -1.6763 34 1 9.9746 -3.5838 -0.1248 35 1 9.5412 -3.7775 2.3131 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776934286.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:16 Heat of formation + Delta-G solvation = 30.239768 kcal Electronic energy + Delta-G solvation = -21165.653015 eV Core-core repulsion = 17935.347014 eV Total energy + Delta-G solvation = -3230.306001 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.15684 -40.63421 -39.14391 -36.28572 -35.48134 -33.96585 -33.57732 -31.92365 -31.32385 -28.63736 -26.96272 -25.76340 -24.93999 -22.82545 -22.35805 -21.10523 -19.21983 -18.91198 -18.51645 -17.54892 -17.28657 -17.10296 -16.64311 -16.27209 -15.75485 -15.53898 -15.03254 -14.91661 -14.65748 -14.39031 -14.00996 -13.55752 -13.38471 -12.91301 -12.85499 -12.77294 -12.50137 -12.29079 -12.27994 -12.12119 -11.33896 -11.22711 -11.14093 -11.07709 -10.89926 -10.25872 -9.76226 -9.20181 -9.15693 -8.56137 -6.32886 -0.03944 0.07026 0.95965 1.11370 1.33362 1.46349 1.48956 1.77103 1.91908 2.18800 2.76641 2.79539 3.27592 3.58702 3.78096 3.91407 4.00564 4.09047 4.25322 4.39271 4.44478 4.60523 4.70100 4.78590 4.82006 4.96167 5.07236 5.16851 5.19750 5.36390 5.53851 5.54468 5.77613 6.02278 6.15980 6.20120 6.39283 6.41305 6.73554 6.98945 7.10186 7.26613 7.95712 8.40007 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.015178 B = 0.005652 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.387934 B = 4952.618299 C = 6138.800172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.034 3.966 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.256 1.256 6 H -0.272 1.272 7 C -0.482 4.482 8 H 0.066 0.934 9 C 0.095 3.905 10 C -0.187 4.187 11 C -0.120 4.120 12 C -0.237 4.237 13 C -0.092 4.092 14 C -0.187 4.187 15 C -0.063 4.063 16 C 0.502 3.498 17 O -0.509 6.509 18 N -0.646 5.646 19 C 0.279 3.721 20 C -0.144 4.144 21 C -0.077 4.077 22 C 0.001 3.999 23 N -0.274 5.274 24 N -0.302 5.302 25 H 0.284 0.716 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.438 0.562 33 H 0.198 0.802 34 H 0.206 0.794 35 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.432 -4.439 -8.530 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.179 4.179 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.180 1.180 6 H -0.197 1.197 7 C -0.512 4.512 8 H 0.085 0.915 9 C 0.093 3.907 10 C -0.206 4.206 11 C -0.138 4.138 12 C -0.256 4.256 13 C -0.110 4.110 14 C -0.189 4.189 15 C -0.102 4.102 16 C 0.290 3.710 17 O -0.379 6.379 18 N -0.298 5.298 19 C 0.040 3.960 20 C -0.176 4.176 21 C -0.105 4.105 22 C -0.168 4.168 23 N -0.114 5.114 24 N -0.150 5.150 25 H 0.095 0.905 26 H 0.115 0.885 27 H 0.123 0.877 28 H 0.134 0.866 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.124 0.876 32 H 0.280 0.720 33 H 0.215 0.785 34 H 0.223 0.777 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 15.940 -4.466 -6.405 17.750 hybrid contribution 0.699 0.996 -1.073 1.622 sum 16.639 -3.470 -7.478 18.569 Atomic orbital electron populations 1.69865 1.08580 1.29899 1.37670 1.26621 0.95533 1.03999 0.91779 0.85305 0.78983 0.77219 0.79049 1.19109 1.18032 1.19711 1.19581 0.95022 0.91343 1.45285 0.91547 1.17751 0.91658 0.92858 0.88418 1.21343 0.99891 0.96682 1.02733 1.20976 0.99195 0.93542 1.00079 1.20761 1.00673 0.97324 1.06841 1.20769 0.95353 0.96476 0.98394 1.19583 0.99619 0.94074 1.05619 1.20310 0.87913 1.05471 0.96549 1.21730 0.84714 0.74956 0.89640 1.90820 1.85749 1.44052 1.17241 1.43608 1.02960 1.72524 1.10689 1.20778 0.89136 0.94925 0.91203 1.22436 0.89287 1.01182 1.04652 1.22840 1.02246 0.93009 0.92438 1.24967 0.96485 0.97614 0.97738 1.72988 0.98505 1.09462 1.30427 1.73532 1.24155 1.14957 1.02339 0.90507 0.88541 0.87687 0.86564 0.86209 0.85749 0.87599 0.72028 0.78540 0.77665 0.77940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.12 10.87 21.82 0.24 -44.88 16 2 C 0.03 1.77 5.26 85.26 0.45 2.22 16 3 Si 0.97 40.35 29.57 68.60 2.03 42.38 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 7 C -0.48 -26.63 8.06 23.46 0.19 -26.44 16 8 H 0.07 3.61 6.79 -2.91 -0.02 3.59 16 9 C 0.10 5.32 5.54 -21.29 -0.12 5.20 16 10 C -0.19 -10.61 8.65 22.73 0.20 -10.42 16 11 C -0.12 -6.04 10.02 22.22 0.22 -5.81 16 12 C -0.24 -10.96 10.05 22.46 0.23 -10.73 16 13 C -0.09 -4.15 9.66 22.22 0.21 -3.94 16 14 C -0.19 -9.03 4.43 -19.40 -0.09 -9.11 16 15 C -0.06 -2.32 5.19 29.10 0.15 -2.17 16 16 C 0.50 19.75 7.40 87.66 0.65 20.40 16 17 O -0.51 -26.40 14.33 -3.02 -0.04 -26.44 16 18 N -0.65 -18.13 5.39 -308.08 -1.66 -19.80 16 19 C 0.28 8.33 7.51 132.97 1.00 9.32 16 20 C -0.14 -2.41 10.07 22.64 0.23 -2.18 16 21 C -0.08 -1.02 10.20 22.49 0.23 -0.79 16 22 C 0.00 0.01 11.31 84.82 0.96 0.97 16 23 N -0.27 -9.56 11.49 -57.21 -0.66 -10.22 16 24 N -0.30 -12.15 9.08 -54.93 -0.50 -12.65 16 25 H 0.28 13.98 8.30 -92.71 -0.77 13.21 16 26 H 0.10 5.76 6.27 -2.91 -0.02 5.74 16 27 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 28 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 29 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 30 H 0.12 3.39 8.05 -2.39 -0.02 3.37 16 31 H 0.11 3.80 7.13 -2.38 -0.02 3.78 16 32 H 0.44 7.19 8.72 -92.71 -0.81 6.38 16 33 H 0.20 1.25 8.06 -2.91 -0.02 1.23 16 34 H 0.21 0.42 8.06 -2.91 -0.02 0.40 16 35 H 0.20 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -85.33 309.01 4.24 -81.09 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.33 Total: 24.00 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: 4.51 Total: -33.48 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -2.58 Total: -87.55 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.04 Total: -26.44 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -85.33 4.24 -81.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776934286.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.331 kcal (2) G-P(sol) polarization free energy of solvation -85.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds