Wall clock time and date at job start Fri Apr 10 2020 15:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99793 * 2 1 4 4 H 1.48499 * 109.47036 * 264.51868 * 3 2 1 5 5 H 1.48496 * 109.47233 * 24.51914 * 3 2 1 6 6 H 1.48502 * 109.46964 * 144.52138 * 3 2 1 7 7 C 1.37877 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99752 * 357.22263 * 7 2 1 9 9 C 1.50693 * 120.00156 * 177.21872 * 7 2 1 10 10 H 1.09000 * 109.47214 * 354.93882 * 9 7 2 11 11 C 1.50699 * 109.47483 * 234.93572 * 9 7 2 12 12 O 1.21273 * 120.00278 * 247.65850 * 11 9 7 13 13 N 1.34787 * 119.99712 * 67.65530 * 11 9 7 14 14 C 1.39397 * 119.99845 * 185.11663 * 13 11 9 15 15 C 1.39225 * 120.08335 * 174.01461 * 14 13 11 16 16 N 1.31964 * 119.90447 * 180.02562 * 15 14 13 17 17 C 1.32249 * 120.07250 * 359.97438 * 16 15 14 18 18 C 1.38218 * 120.16745 * 0.27257 * 17 16 15 19 19 N 1.32211 * 120.09826 * 359.44278 * 18 17 16 20 20 C 1.50700 * 109.47284 * 114.93718 * 9 7 2 21 21 C 1.38232 * 119.99914 * 52.56939 * 20 9 7 22 22 C 1.38237 * 120.00114 * 179.78894 * 21 20 9 23 23 C 1.38234 * 119.99600 * 0.44785 * 22 21 20 24 24 C 1.38236 * 120.00281 * 359.80760 * 23 22 21 25 25 C 1.38232 * 120.00121 * 232.84756 * 20 9 7 26 26 H 0.96999 * 120.00235 * 0.02562 * 1 2 3 27 27 H 0.96997 * 119.99734 * 5.11790 * 13 11 9 28 28 H 1.07999 * 120.05440 * 0.04163 * 15 14 13 29 29 H 1.07995 * 119.91465 * 180.02562 * 17 16 15 30 30 H 1.08008 * 119.94737 * 179.70060 * 18 17 16 31 31 H 1.08004 * 120.00030 * 0.02562 * 21 20 9 32 32 H 1.08004 * 120.00142 * 180.27641 * 22 21 20 33 33 H 1.08009 * 119.99721 * 179.83721 * 23 22 21 34 34 H 1.07998 * 119.99927 * 180.02562 * 24 23 22 35 35 H 1.08000 * 120.00314 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6124 1.9796 -1.3937 5 1 1.3934 2.6833 0.5810 6 1 3.4840 1.4764 0.8126 7 6 2.0046 -1.1940 0.0005 8 1 1.4655 -2.1288 0.0463 9 6 3.5102 -1.1948 -0.0628 10 1 3.8689 -0.1739 -0.1939 11 6 3.9637 -2.0398 -1.2253 12 8 4.5506 -3.0820 -1.0249 13 7 3.7169 -1.6373 -2.4877 14 6 4.0403 -2.4675 -3.5598 15 6 3.6742 -2.1100 -4.8546 16 7 3.9817 -2.8988 -5.8668 17 6 4.6371 -4.0273 -5.6522 18 6 4.9976 -4.3876 -4.3674 19 7 4.6978 -3.5996 -3.3490 20 6 4.0665 -1.7621 1.2177 21 6 3.6292 -2.9904 1.6770 22 6 4.1427 -3.5128 2.8493 23 6 5.0868 -2.8026 3.5671 24 6 5.5203 -1.5719 3.1106 25 6 5.0100 -1.0516 1.9360 26 1 -0.4850 0.8400 -0.0004 27 1 3.3143 -0.7699 -2.6502 28 1 3.1395 -1.1883 -5.0304 29 1 4.8878 -4.6707 -6.4825 30 1 5.5285 -5.3124 -4.1957 31 1 2.8891 -3.5437 1.1179 32 1 3.8043 -4.4745 3.2058 33 1 5.4861 -3.2096 4.4845 34 1 6.2582 -1.0174 3.6712 35 1 5.3487 -0.0901 1.5794 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001124576284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:49 Heat of formation + Delta-G solvation = 50.845545 kcal Electronic energy + Delta-G solvation = -21372.192088 eV Core-core repulsion = 18142.779621 eV Total energy + Delta-G solvation = -3229.412467 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.00659 -39.33828 -37.98467 -34.76315 -33.86443 -33.50712 -31.65505 -30.19158 -30.14718 -27.86440 -24.81269 -24.19330 -23.26785 -21.91851 -21.16021 -19.62761 -17.98297 -17.25459 -17.06442 -16.65244 -16.07269 -15.74281 -15.07105 -14.68663 -14.54030 -14.26590 -13.92783 -13.52870 -13.11041 -12.91376 -12.76333 -12.69091 -12.15887 -11.94361 -11.40758 -11.21785 -11.17949 -11.11996 -10.55055 -10.35479 -10.28156 -10.09084 -9.64277 -9.40077 -8.96260 -8.52502 -8.18845 -8.13605 -7.89850 -6.42779 -4.47752 0.98845 1.39507 2.08440 2.15088 2.98795 3.12823 3.13623 3.23456 3.41093 4.06191 4.07650 4.42924 4.46181 4.57607 4.69406 4.90772 5.23102 5.34631 5.49776 5.53962 5.58380 5.65305 5.84401 5.91081 6.07358 6.26137 6.28142 6.33317 6.65236 6.78603 6.83451 7.11106 7.13471 7.19581 7.37171 7.50328 7.67981 7.74913 8.10023 8.17699 8.59091 8.86980 9.12673 10.68251 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.013849 B = 0.006658 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.318618 B = 4204.637627 C = 5607.525583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.083 3.917 3 Si 0.864 3.136 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.259 1.259 7 C -0.513 4.513 8 H 0.085 0.915 9 C 0.032 3.968 10 H 0.068 0.932 11 C 0.518 3.482 12 O -0.488 6.488 13 N -0.649 5.649 14 C 0.332 3.668 15 C 0.009 3.991 16 N -0.415 5.415 17 C -0.012 4.012 18 C 0.087 3.913 19 N -0.437 5.437 20 C -0.029 4.029 21 C -0.073 4.073 22 C -0.128 4.128 23 C -0.140 4.140 24 C -0.129 4.129 25 C -0.131 4.131 26 H 0.271 0.729 27 H 0.421 0.579 28 H 0.168 0.832 29 H 0.164 0.836 30 H 0.167 0.833 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.641 -2.217 -4.309 9.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.122 4.122 3 Si 0.690 3.310 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.550 4.550 8 H 0.103 0.897 9 C 0.011 3.989 10 H 0.086 0.914 11 C 0.306 3.694 12 O -0.358 6.358 13 N -0.294 5.294 14 C 0.097 3.903 15 C -0.157 4.157 16 N -0.128 5.128 17 C -0.172 4.172 18 C -0.074 4.074 19 N -0.158 5.158 20 C -0.030 4.030 21 C -0.091 4.091 22 C -0.147 4.147 23 C -0.158 4.158 24 C -0.147 4.147 25 C -0.149 4.149 26 H 0.082 0.918 27 H 0.259 0.741 28 H 0.185 0.815 29 H 0.181 0.819 30 H 0.184 0.816 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.841 -2.809 -4.008 10.105 hybrid contribution -0.030 1.361 -0.031 1.362 sum 8.811 -1.448 -4.039 9.800 Atomic orbital electron populations 1.69844 1.06217 1.27751 1.47291 1.25073 0.94835 0.98744 0.93584 0.87027 0.80796 0.83788 0.79354 1.19445 1.20599 1.18375 1.20568 0.85814 0.95589 1.53001 0.89724 1.18417 0.98650 0.95031 0.86835 0.91415 1.22066 0.76380 0.87601 0.83334 1.90701 1.37149 1.23795 1.84172 1.43877 1.60794 1.20066 1.04646 1.19750 0.92005 0.90221 0.88367 1.23178 1.03101 1.01784 0.87666 1.68275 1.07792 1.03350 1.33428 1.23443 1.00144 0.95659 0.97976 1.23714 0.96030 0.98840 0.88860 1.68596 1.10894 1.02819 1.33521 1.19843 0.92895 0.93825 0.96410 1.20874 0.98136 0.95142 0.94928 1.21036 0.98085 0.99595 0.95946 1.20891 0.99280 0.95741 0.99932 1.20889 1.00667 0.96313 0.96847 1.20980 0.97916 0.99840 0.96195 0.91840 0.74118 0.81498 0.81877 0.81620 0.86439 0.87043 0.87252 0.87170 0.87177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.86 13.96 55.43 0.77 -23.08 16 2 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 3 Si 0.86 18.33 26.99 -169.99 -4.59 13.75 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.26 -5.32 6.72 56.52 0.38 -4.94 16 7 C -0.51 -12.76 8.24 -34.44 -0.28 -13.04 16 8 H 0.08 2.37 7.70 -52.48 -0.40 1.97 16 9 C 0.03 0.71 2.23 -94.08 -0.21 0.50 16 10 H 0.07 1.41 4.49 -51.93 -0.23 1.17 16 11 C 0.52 11.09 6.95 -10.98 -0.08 11.01 16 12 O -0.49 -11.50 13.64 5.56 0.08 -11.42 16 13 N -0.65 -11.93 5.38 -11.33 -0.06 -11.99 16 14 C 0.33 5.82 7.42 -154.43 -1.15 4.67 16 15 C 0.01 0.14 11.09 -17.13 -0.19 -0.05 16 16 N -0.41 -6.03 10.49 -12.89 -0.14 -6.16 16 17 C -0.01 -0.15 11.21 -17.38 -0.19 -0.35 16 18 C 0.09 1.21 11.22 -17.40 -0.20 1.02 16 19 N -0.44 -8.02 8.07 -12.17 -0.10 -8.12 16 20 C -0.03 -0.62 4.36 -104.63 -0.46 -1.08 16 21 C -0.07 -1.54 8.21 -39.58 -0.33 -1.87 16 22 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 23 C -0.14 -2.36 10.05 -39.58 -0.40 -2.76 16 24 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 25 C -0.13 -2.55 9.67 -39.59 -0.38 -2.93 16 26 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.42 6.76 8.72 -40.82 -0.36 6.40 16 28 H 0.17 2.00 8.06 -52.49 -0.42 1.58 16 29 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.17 1.74 8.06 -52.48 -0.42 1.32 16 31 H 0.12 2.62 7.57 -52.48 -0.40 2.22 16 32 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 33 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 34 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 35 H 0.11 1.97 7.96 -52.49 -0.42 1.55 16 LS Contribution 308.78 15.07 4.65 4.65 Total: -1.00 -31.18 308.78 -7.63 -38.81 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -3.50 Total: 11.83 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -4.75 Total: -8.25 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.48 Total: -49.36 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.08 Total: -11.42 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -4.59 Total: 13.75 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.18 -7.63 -38.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124576284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.655 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds