Wall clock time and date at job start Fri Apr 10 2020 15:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99964 * 2 1 4 4 H 1.48498 * 109.47066 * 270.00141 * 3 2 1 5 5 H 1.48507 * 109.47089 * 30.00184 * 3 2 1 6 6 H 1.48501 * 109.47177 * 150.00019 * 3 2 1 7 7 C 1.37876 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00410 * 185.04701 * 7 2 1 9 9 C 1.50700 * 119.99828 * 5.04896 * 7 2 1 10 10 H 1.09005 * 109.47083 * 32.97826 * 9 7 2 11 11 C 1.50702 * 109.47280 * 152.97944 * 9 7 2 12 12 O 1.21272 * 119.99960 * 119.99997 * 11 9 7 13 13 N 1.34776 * 119.99849 * 299.99827 * 11 9 7 14 14 C 1.39434 * 120.00051 * 185.02759 * 13 11 9 15 15 C 1.39390 * 120.15201 * 174.34492 * 14 13 11 16 16 C 1.38622 * 117.91357 * 180.02562 * 15 14 13 17 17 C 1.38768 * 118.02964 * 0.27337 * 16 15 14 18 18 N 1.31830 * 120.00216 * 359.43954 * 17 16 15 19 19 N 1.28352 * 122.26713 * 0.58322 * 18 17 16 20 20 C 1.50699 * 109.46993 * 272.98015 * 9 7 2 21 21 C 1.38240 * 120.00078 * 306.70812 * 20 9 7 22 22 C 1.38235 * 119.99993 * 179.78914 * 21 20 9 23 23 C 1.38227 * 119.99862 * 0.44179 * 22 21 20 24 24 C 1.38240 * 120.00371 * 359.81300 * 23 22 21 25 25 C 1.38226 * 119.99669 * 359.97438 * 24 23 22 26 26 H 0.96995 * 119.99633 * 359.97438 * 1 2 3 27 27 H 0.97004 * 120.00026 * 5.02655 * 13 11 9 28 28 H 1.07997 * 121.04133 * 0.04540 * 15 14 13 29 29 H 1.07997 * 120.98347 * 180.02562 * 16 15 14 30 30 H 1.07999 * 120.00005 * 179.72169 * 17 16 15 31 31 H 1.08004 * 119.99665 * 359.97438 * 21 20 9 32 32 H 1.08003 * 119.99866 * 180.27320 * 22 21 20 33 33 H 1.08007 * 120.00048 * 179.83291 * 23 22 21 34 34 H 1.07995 * 119.99761 * 179.97438 * 24 23 22 35 35 H 1.08001 * 120.00066 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0815 -1.1959 0.0817 9 6 1.2555 -2.4965 -0.1160 10 1 0.3724 -2.3538 -0.7388 11 6 2.1491 -3.5362 -0.7420 12 8 2.4170 -4.5508 -0.1343 13 7 2.6503 -3.3383 -1.9774 14 6 3.3901 -4.3435 -2.5989 15 6 3.8096 -4.1896 -3.9192 16 6 4.5419 -5.2181 -4.4915 17 6 4.8071 -6.3389 -3.7174 18 7 4.3754 -6.3980 -2.4732 19 7 3.6970 -5.4492 -1.9376 20 6 0.8339 -2.9568 1.2557 21 6 1.7716 -3.0715 2.2649 22 6 1.3841 -3.4894 3.5243 23 6 0.0604 -3.8014 3.7720 24 6 -0.8764 -3.6918 2.7614 25 6 -0.4897 -3.2697 1.5033 26 1 -0.4849 0.8400 0.0004 27 1 2.4963 -2.4964 -2.4341 28 1 3.5718 -3.2970 -4.4786 29 1 4.8922 -5.1508 -5.5108 30 1 5.3711 -7.1610 -4.1329 31 1 2.8065 -2.8316 2.0702 32 1 2.1160 -3.5748 4.3139 33 1 -0.2419 -4.1306 4.7552 34 1 -1.9105 -3.9360 2.9549 35 1 -1.2215 -3.1844 0.7136 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353994727.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:38 Heat of formation + Delta-G solvation = 56.655174 kcal Electronic energy + Delta-G solvation = -21296.382922 eV Core-core repulsion = 18067.222380 eV Total energy + Delta-G solvation = -3229.160543 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.90853 -39.17409 -37.77578 -34.75243 -33.75194 -32.89878 -31.22278 -30.53187 -29.90678 -27.46966 -24.71068 -24.35304 -23.43098 -21.58014 -21.06421 -19.61255 -17.70857 -17.20426 -16.66746 -16.56711 -15.80363 -15.70899 -15.03676 -14.53970 -14.30815 -13.97378 -13.82025 -13.47562 -13.09922 -12.98875 -12.45552 -12.29197 -11.79899 -11.63942 -11.21318 -11.09705 -11.01287 -10.85641 -10.43815 -10.29829 -10.13147 -10.07374 -9.49771 -9.41397 -8.81024 -8.66577 -8.33447 -7.90885 -7.60568 -6.35166 -4.44632 0.96719 1.18691 2.40214 2.42756 3.12279 3.21556 3.23580 3.32214 3.43017 3.98664 4.21318 4.41857 4.70504 4.78036 4.81586 4.93585 5.03382 5.16219 5.66164 5.75418 5.81401 5.87405 5.94945 6.14907 6.18710 6.20537 6.50990 6.59231 6.78842 6.89685 6.97561 7.12456 7.40033 7.45496 7.54265 7.69156 7.82482 7.92726 8.07717 8.58304 8.88091 9.14390 9.23224 10.72492 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.013567 B = 0.006299 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.331174 B = 4443.988128 C = 5978.739075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.076 3.924 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.526 4.526 8 H 0.065 0.935 9 C 0.060 3.940 10 H 0.086 0.914 11 C 0.515 3.485 12 O -0.488 6.488 13 N -0.648 5.648 14 C 0.312 3.688 15 C -0.162 4.162 16 C -0.094 4.094 17 C -0.012 4.012 18 N -0.216 5.216 19 N -0.236 5.236 20 C -0.010 4.010 21 C -0.084 4.084 22 C -0.134 4.134 23 C -0.146 4.146 24 C -0.132 4.132 25 C -0.112 4.112 26 H 0.268 0.732 27 H 0.424 0.576 28 H 0.149 0.851 29 H 0.147 0.853 30 H 0.166 0.834 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.881 -4.397 -7.445 9.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.130 4.130 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.564 4.564 8 H 0.083 0.917 9 C 0.038 3.962 10 H 0.104 0.896 11 C 0.304 3.696 12 O -0.357 6.357 13 N -0.295 5.295 14 C 0.074 3.926 15 C -0.195 4.195 16 C -0.123 4.123 17 C -0.180 4.180 18 N -0.059 5.059 19 N -0.086 5.086 20 C -0.011 4.011 21 C -0.102 4.102 22 C -0.152 4.152 23 C -0.164 4.164 24 C -0.151 4.151 25 C -0.130 4.130 26 H 0.078 0.922 27 H 0.263 0.737 28 H 0.167 0.833 29 H 0.165 0.835 30 H 0.183 0.817 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.686 -5.780 -5.460 8.763 hybrid contribution 0.436 2.365 -1.644 2.913 sum 4.121 -3.415 -7.103 8.894 Atomic orbital electron populations 1.69934 1.06002 1.27582 1.47047 1.24966 0.94890 0.99433 0.93680 0.86476 0.80014 0.82640 0.78331 1.20299 1.20939 1.19594 1.20696 0.93263 0.88317 1.54104 0.91719 1.18091 0.95733 0.91480 0.90855 0.89632 1.22147 0.80070 0.88179 0.79228 1.90746 1.56724 1.28477 1.59725 1.43969 1.50573 1.16159 1.18829 1.20557 0.91094 0.90980 0.89985 1.21930 1.01328 1.01791 0.94472 1.22161 0.95794 0.93086 1.01252 1.24137 1.01598 0.99054 0.93176 1.73081 1.03760 1.19038 1.09972 1.73740 1.09943 0.97578 1.27358 1.19893 0.92511 0.92254 0.96476 1.20819 0.99358 0.97707 0.92300 1.20939 0.95702 1.01660 0.96915 1.20802 0.93757 1.03575 0.98314 1.20883 0.98357 1.01955 0.93860 1.20929 0.96038 0.99509 0.96541 0.92225 0.73713 0.83291 0.83496 0.81706 0.87114 0.87576 0.87716 0.87581 0.87121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.27 12.98 55.43 0.72 -21.55 16 2 C 0.08 1.86 5.45 -17.82 -0.10 1.77 16 3 Si 0.90 19.21 29.54 -169.99 -5.02 14.19 16 4 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.53 -12.65 7.38 -34.44 -0.25 -12.91 16 8 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 9 C 0.06 1.37 2.25 -94.07 -0.21 1.16 16 10 H 0.09 2.04 7.38 -51.93 -0.38 1.66 16 11 C 0.51 11.35 7.00 -10.98 -0.08 11.28 16 12 O -0.49 -12.13 13.74 5.56 0.08 -12.06 16 13 N -0.65 -11.81 5.32 -11.31 -0.06 -11.87 16 14 C 0.31 5.42 7.50 -154.47 -1.16 4.26 16 15 C -0.16 -2.01 10.07 -39.01 -0.39 -2.41 16 16 C -0.09 -0.98 10.20 -39.24 -0.40 -1.38 16 17 C -0.01 -0.15 11.31 -17.36 -0.20 -0.35 16 18 N -0.22 -3.82 11.49 30.57 0.35 -3.47 16 19 N -0.24 -4.78 9.09 31.28 0.28 -4.50 16 20 C -0.01 -0.24 4.29 -104.62 -0.45 -0.69 16 21 C -0.08 -1.91 8.34 -39.58 -0.33 -2.24 16 22 C -0.13 -2.72 10.05 -39.59 -0.40 -3.11 16 23 C -0.15 -2.79 10.05 -39.58 -0.40 -3.19 16 24 C -0.13 -2.61 10.05 -39.59 -0.40 -3.00 16 25 C -0.11 -2.46 9.67 -39.59 -0.38 -2.84 16 26 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 27 H 0.42 6.61 8.53 -40.82 -0.35 6.27 16 28 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.11 2.57 7.87 -52.48 -0.41 2.15 16 32 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 33 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 34 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 35 H 0.11 2.33 7.96 -52.49 -0.42 1.91 16 LS Contribution 313.30 15.07 4.72 4.72 Total: -1.00 -31.28 313.30 -7.72 -38.99 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -3.64 Total: 9.19 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -5.14 Total: -13.65 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 1.29 Total: -41.39 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.08 Total: -12.06 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.28 -7.72 -38.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353994727.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.650 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds