Wall clock time and date at job start Fri Apr 10 2020 15:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99964 * 2 1 4 4 H 1.48498 * 109.47066 * 270.00141 * 3 2 1 5 5 H 1.48507 * 109.47089 * 30.00184 * 3 2 1 6 6 H 1.48501 * 109.47177 * 150.00019 * 3 2 1 7 7 C 1.37876 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00410 * 185.04701 * 7 2 1 9 9 C 1.50700 * 119.99828 * 5.04896 * 7 2 1 10 10 H 1.09005 * 109.47083 * 32.97826 * 9 7 2 11 11 C 1.50702 * 109.47280 * 152.97944 * 9 7 2 12 12 O 1.21272 * 119.99960 * 119.99997 * 11 9 7 13 13 N 1.34776 * 119.99849 * 299.99827 * 11 9 7 14 14 C 1.39434 * 120.00051 * 185.02759 * 13 11 9 15 15 C 1.39390 * 120.15201 * 174.34492 * 14 13 11 16 16 C 1.38622 * 117.91357 * 180.02562 * 15 14 13 17 17 C 1.38768 * 118.02964 * 0.27337 * 16 15 14 18 18 N 1.31830 * 120.00216 * 359.43954 * 17 16 15 19 19 N 1.28352 * 122.26713 * 0.58322 * 18 17 16 20 20 C 1.50699 * 109.46993 * 272.98015 * 9 7 2 21 21 C 1.38240 * 120.00078 * 306.70812 * 20 9 7 22 22 C 1.38235 * 119.99993 * 179.78914 * 21 20 9 23 23 C 1.38227 * 119.99862 * 0.44179 * 22 21 20 24 24 C 1.38240 * 120.00371 * 359.81300 * 23 22 21 25 25 C 1.38226 * 119.99669 * 359.97438 * 24 23 22 26 26 H 0.96995 * 119.99633 * 359.97438 * 1 2 3 27 27 H 0.97004 * 120.00026 * 5.02655 * 13 11 9 28 28 H 1.07997 * 121.04133 * 0.04540 * 15 14 13 29 29 H 1.07997 * 120.98347 * 180.02562 * 16 15 14 30 30 H 1.07999 * 120.00005 * 179.72169 * 17 16 15 31 31 H 1.08004 * 119.99665 * 359.97438 * 21 20 9 32 32 H 1.08003 * 119.99866 * 180.27320 * 22 21 20 33 33 H 1.08007 * 120.00048 * 179.83291 * 23 22 21 34 34 H 1.07995 * 119.99761 * 179.97438 * 24 23 22 35 35 H 1.08001 * 120.00066 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0815 -1.1959 0.0817 9 6 1.2555 -2.4965 -0.1160 10 1 0.3724 -2.3538 -0.7388 11 6 2.1491 -3.5362 -0.7420 12 8 2.4170 -4.5508 -0.1343 13 7 2.6503 -3.3383 -1.9774 14 6 3.3901 -4.3435 -2.5989 15 6 3.8096 -4.1896 -3.9192 16 6 4.5419 -5.2181 -4.4915 17 6 4.8071 -6.3389 -3.7174 18 7 4.3754 -6.3980 -2.4732 19 7 3.6970 -5.4492 -1.9376 20 6 0.8339 -2.9568 1.2557 21 6 1.7716 -3.0715 2.2649 22 6 1.3841 -3.4894 3.5243 23 6 0.0604 -3.8014 3.7720 24 6 -0.8764 -3.6918 2.7614 25 6 -0.4897 -3.2697 1.5033 26 1 -0.4849 0.8400 0.0004 27 1 2.4963 -2.4964 -2.4341 28 1 3.5718 -3.2970 -4.4786 29 1 4.8922 -5.1508 -5.5108 30 1 5.3711 -7.1610 -4.1329 31 1 2.8065 -2.8316 2.0702 32 1 2.1160 -3.5748 4.3139 33 1 -0.2419 -4.1306 4.7552 34 1 -1.9105 -3.9360 2.9549 35 1 -1.2215 -3.1844 0.7136 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353994727.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:37 Heat of formation + Delta-G solvation = 37.193349 kcal Electronic energy + Delta-G solvation = -21297.226850 eV Core-core repulsion = 18067.222380 eV Total energy + Delta-G solvation = -3230.004471 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.13719 -40.74676 -39.36023 -36.20783 -35.56054 -33.94956 -32.96243 -31.84895 -31.53764 -29.15772 -26.20885 -25.64606 -24.80684 -23.21923 -22.58620 -21.19461 -19.03198 -18.82835 -18.27647 -17.55343 -17.40021 -17.13929 -16.49764 -16.19330 -15.84839 -15.61321 -15.07536 -14.94181 -14.60975 -14.07786 -14.03852 -13.92077 -13.53373 -13.30348 -12.88659 -12.76510 -12.39295 -12.30702 -12.09332 -11.97906 -11.70220 -11.29334 -11.12784 -10.73257 -10.65935 -10.19525 -9.70073 -9.55508 -9.27087 -8.22404 -6.37036 -0.03637 0.07709 0.76132 0.79105 1.42442 1.46108 1.54387 1.84361 1.98412 2.41186 2.79077 3.05634 3.21671 3.36773 3.65480 3.91679 4.02103 4.20804 4.26072 4.28863 4.36410 4.43610 4.49871 4.83754 4.85459 4.95219 4.99149 5.04996 5.21921 5.35645 5.42567 5.59004 5.63114 5.77997 5.81276 5.89917 6.20776 6.34942 6.45936 6.69024 7.28302 7.33606 7.96033 8.85091 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.013567 B = 0.006299 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.331174 B = 4443.988128 C = 5978.739075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.038 3.962 3 Si 0.956 3.044 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.063 3.937 10 H 0.069 0.931 11 C 0.517 3.483 12 O -0.525 6.525 13 N -0.643 5.643 14 C 0.281 3.719 15 C -0.152 4.152 16 C -0.072 4.072 17 C 0.000 4.000 18 N -0.269 5.269 19 N -0.298 5.298 20 C -0.036 4.036 21 C -0.112 4.112 22 C -0.137 4.137 23 C -0.143 4.143 24 C -0.131 4.131 25 C -0.136 4.136 26 H 0.268 0.732 27 H 0.434 0.566 28 H 0.187 0.813 29 H 0.206 0.794 30 H 0.208 0.792 31 H 0.092 0.908 32 H 0.133 0.867 33 H 0.146 0.854 34 H 0.140 0.860 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.689 -4.367 -8.973 11.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.165 4.165 3 Si 0.781 3.219 4 H -0.185 1.185 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.073 0.927 9 C 0.042 3.958 10 H 0.086 0.914 11 C 0.306 3.694 12 O -0.397 6.397 13 N -0.291 5.291 14 C 0.042 3.958 15 C -0.183 4.183 16 C -0.101 4.101 17 C -0.168 4.168 18 N -0.109 5.109 19 N -0.146 5.146 20 C -0.037 4.037 21 C -0.130 4.130 22 C -0.155 4.155 23 C -0.161 4.161 24 C -0.148 4.148 25 C -0.154 4.154 26 H 0.077 0.923 27 H 0.274 0.726 28 H 0.204 0.796 29 H 0.223 0.777 30 H 0.225 0.775 31 H 0.111 0.889 32 H 0.151 0.849 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.515 -5.765 -7.021 10.144 hybrid contribution 0.265 2.223 -1.297 2.587 sum 4.781 -3.542 -8.317 10.226 Atomic orbital electron populations 1.70035 1.07123 1.28123 1.48135 1.25587 0.95495 1.02013 0.93390 0.85586 0.78329 0.79031 0.78937 1.18528 1.21340 1.20161 1.20729 0.92749 0.89079 1.53795 0.92714 1.17974 0.95181 0.91658 0.91007 0.91360 1.21898 0.79926 0.87324 0.80299 1.90709 1.58253 1.29682 1.61090 1.43613 1.50652 1.17055 1.17772 1.20813 0.92456 0.90525 0.92030 1.22399 1.00010 1.03682 0.92257 1.22814 0.93286 0.90850 1.03142 1.24951 0.99470 1.00796 0.91591 1.72958 1.05682 1.19273 1.12953 1.73534 1.11964 0.99174 1.29944 1.20046 0.93464 0.93482 0.96678 1.20846 0.98520 0.99804 0.93819 1.21303 0.97271 1.00510 0.96414 1.21265 0.92846 1.02040 0.99913 1.21300 1.00323 1.00364 0.92851 1.21106 0.95547 1.00793 0.97984 0.92261 0.72593 0.79562 0.77676 0.77535 0.88946 0.84882 0.83585 0.84223 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.04 12.98 21.45 0.28 -46.76 16 2 C 0.04 1.90 5.45 84.65 0.46 2.37 16 3 Si 0.96 39.74 29.54 68.60 2.03 41.77 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.29 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.53 -26.32 7.38 25.60 0.19 -26.13 16 8 H 0.05 2.79 7.82 -2.91 -0.02 2.76 16 9 C 0.06 3.08 2.25 -13.03 -0.03 3.05 16 10 H 0.07 3.49 7.38 -2.38 -0.02 3.47 16 11 C 0.52 24.24 7.00 87.66 0.61 24.86 16 12 O -0.52 -27.96 13.74 -3.01 -0.04 -28.00 16 13 N -0.64 -24.38 5.32 -308.10 -1.64 -26.02 16 14 C 0.28 9.86 7.50 132.97 1.00 10.85 16 15 C -0.15 -3.36 10.07 22.64 0.23 -3.13 16 16 C -0.07 -1.18 10.20 22.49 0.23 -0.95 16 17 C 0.00 0.01 11.31 84.82 0.96 0.97 16 18 N -0.27 -9.55 11.49 -57.21 -0.66 -10.21 16 19 N -0.30 -12.55 9.09 -54.94 -0.50 -13.05 16 20 C -0.04 -1.75 4.29 -19.86 -0.09 -1.84 16 21 C -0.11 -5.32 8.34 22.27 0.19 -5.14 16 22 C -0.14 -5.51 10.05 22.27 0.22 -5.29 16 23 C -0.14 -5.18 10.05 22.27 0.22 -4.95 16 24 C -0.13 -5.01 10.05 22.27 0.22 -4.79 16 25 C -0.14 -6.17 9.67 22.27 0.22 -5.95 16 26 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 27 H 0.43 13.94 8.53 -92.71 -0.79 13.14 16 28 H 0.19 2.60 8.06 -2.91 -0.02 2.57 16 29 H 0.21 1.00 8.06 -2.91 -0.02 0.97 16 30 H 0.21 2.60 8.06 -2.91 -0.02 2.58 16 31 H 0.09 4.60 7.87 -2.91 -0.02 4.57 16 32 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 33 H 0.15 4.07 8.06 -2.91 -0.02 4.04 16 34 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 35 H 0.11 4.78 7.96 -2.91 -0.02 4.76 16 Total: -1.00 -74.18 313.30 4.44 -69.74 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 0.33 Total: 28.61 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 4.64 Total: -16.06 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -2.52 Total: -96.05 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.04 Total: -28.00 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Total: -74.18 4.44 -69.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353994727.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.932 kcal (2) G-P(sol) polarization free energy of solvation -74.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds