Wall clock time and date at job start Fri Apr 10 2020 15:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35316 * 126.12346 * 2 1 4 4 C 1.50700 * 126.04188 * 0.02562 * 3 2 1 5 5 H 1.09003 * 109.46969 * 39.95368 * 4 3 2 6 6 C 1.53002 * 109.47372 * 279.95432 * 4 3 2 7 7 N 1.46501 * 109.47038 * 159.95035 * 4 3 2 8 8 C 1.34781 * 119.99773 * 205.00084 * 7 4 3 9 9 O 1.21276 * 120.00191 * 359.97438 * 8 7 4 10 10 C 1.50702 * 119.99723 * 180.02562 * 8 7 4 11 11 S 1.81000 * 109.46980 * 179.97438 * 10 8 7 12 12 C 1.76201 * 99.99896 * 179.97438 * 11 10 8 13 13 H 1.07995 * 120.00319 * 0.02562 * 12 11 10 14 14 C 1.38799 * 119.99932 * 180.02562 * 12 11 10 15 15 N 1.31629 * 120.00309 * 180.02562 * 14 12 11 16 16 Si 1.86807 * 119.99849 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46957 * 90.00194 * 16 14 12 18 18 H 1.48503 * 109.46709 * 210.00026 * 16 14 12 19 19 H 1.48493 * 109.47092 * 330.00081 * 16 14 12 20 20 C 1.39873 * 107.91987 * 179.97438 * 3 2 1 21 21 N 1.30832 * 108.20166 * 0.02562 * 20 3 2 22 22 N 1.34943 * 126.13122 * 179.97438 * 2 1 3 23 23 C 1.46500 * 126.03414 * 0.26478 * 22 2 1 24 24 H 1.09001 * 109.47870 * 270.02434 * 1 2 3 25 25 H 1.09003 * 109.47509 * 30.02979 * 1 2 3 26 26 H 1.09004 * 109.47023 * 150.02523 * 1 2 3 27 27 H 1.08997 * 109.47085 * 180.02562 * 6 4 3 28 28 H 1.08997 * 109.46615 * 299.99799 * 6 4 3 29 29 H 1.09002 * 109.47110 * 59.99492 * 6 4 3 30 30 H 0.96993 * 120.00330 * 25.00645 * 7 4 3 31 31 H 1.08992 * 109.47355 * 299.99825 * 10 8 7 32 32 H 1.09004 * 109.47370 * 60.00253 * 10 8 7 33 33 H 0.97000 * 120.00285 * 179.97438 * 15 14 12 34 34 H 1.07998 * 125.89584 * 180.02562 * 20 3 2 35 35 H 1.08997 * 109.47763 * 269.71272 * 23 22 2 36 36 H 1.09004 * 109.47211 * 29.71722 * 23 22 2 37 37 H 1.09012 * 109.46942 * 149.71408 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 1.8431 2.5276 0.0005 5 1 0.9822 2.6320 0.6608 6 6 1.4490 2.9372 -1.4200 7 7 2.9289 3.3897 0.4739 8 6 2.6467 4.5824 1.0347 9 8 1.4939 4.9421 1.1470 10 6 3.7636 5.4695 1.5211 11 16 3.0680 6.9887 2.2170 12 6 4.5503 7.8136 2.6935 13 1 5.5083 7.3467 2.5186 14 6 4.4867 9.0635 3.2936 15 7 5.5940 9.6801 3.6492 16 14 2.8296 9.8715 3.5954 17 1 2.3235 9.4775 4.9348 18 1 2.9809 11.3477 3.5379 19 1 1.8673 9.4315 2.5535 20 6 3.6334 0.6561 0.0006 21 7 3.6334 -0.6523 0.0004 22 7 2.3026 -1.0899 0.0005 23 6 1.8540 -2.4845 -0.0044 24 1 -0.3635 0.0004 1.0276 25 1 -0.3634 0.8897 -0.5143 26 1 -0.3633 -0.8902 -0.5135 27 1 1.1157 3.9749 -1.4196 28 1 2.3100 2.8328 -2.0802 29 1 0.6412 2.2957 -1.7722 30 1 3.8509 3.1023 0.3837 31 1 4.3351 4.9467 2.2879 32 1 4.4189 5.7194 0.6866 33 1 5.5495 10.5538 4.0682 34 1 4.5082 1.2893 0.0011 35 1 1.7437 -2.8344 1.0220 36 1 0.8949 -2.5559 -0.5176 37 1 2.5895 -3.1010 -0.5214 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042045854.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:09 Heat of formation + Delta-G solvation = 7.743104 kcal Electronic energy + Delta-G solvation = -19401.400585 eV Core-core repulsion = 16305.563007 eV Total energy + Delta-G solvation = -3095.837578 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.42934 -40.59020 -36.77052 -34.65581 -34.28261 -33.49673 -31.63416 -29.77299 -27.93406 -27.82497 -27.51104 -24.04046 -22.44238 -20.96561 -20.57757 -19.74325 -18.05024 -17.76011 -17.09568 -16.67267 -16.55033 -16.37860 -15.69306 -15.35115 -14.97103 -14.92674 -14.69531 -14.37769 -14.00719 -13.82711 -13.53942 -13.35609 -13.32222 -13.20278 -13.03632 -12.98232 -12.78342 -12.53535 -12.33212 -11.84434 -11.48860 -11.15303 -10.95059 -10.51284 -10.24663 -10.19120 -9.28746 -8.96722 -8.49793 -6.20141 0.84980 1.01358 1.33235 1.48401 1.55368 1.60741 1.64273 1.72982 2.25832 2.31108 2.74445 2.88458 3.53051 3.74594 3.87480 4.12795 4.17156 4.25476 4.30245 4.36705 4.41937 4.44344 4.50751 4.63065 4.72101 4.75152 4.85750 5.05259 5.07478 5.13479 5.32706 5.54061 5.61320 5.72539 6.09950 6.13429 6.51472 6.68199 6.95390 7.23482 8.62726 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.038163 B = 0.003217 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.527054 B = 8702.093869 C = 9072.459266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.100 3.900 3 C -0.263 4.263 4 C 0.231 3.769 5 H 0.077 0.923 6 C -0.151 4.151 7 N -0.707 5.707 8 C 0.539 3.461 9 O -0.559 6.559 10 C -0.113 4.113 11 S -0.172 6.172 12 C -0.529 4.529 13 H 0.061 0.939 14 C 0.044 3.956 15 N -0.919 5.919 16 Si 0.915 3.085 17 H -0.262 1.262 18 H -0.260 1.260 19 H -0.235 1.235 20 C 0.049 3.951 21 N -0.329 5.329 22 N -0.376 5.376 23 C 0.090 3.910 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.411 0.589 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.277 0.723 34 H 0.195 0.805 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.459 -25.270 -10.658 29.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.029 4.029 3 C -0.275 4.275 4 C 0.126 3.874 5 H 0.095 0.905 6 C -0.209 4.209 7 N -0.361 5.361 8 C 0.325 3.675 9 O -0.437 6.437 10 C -0.264 4.264 11 S 0.055 5.945 12 C -0.677 4.677 13 H 0.080 0.920 14 C -0.161 4.161 15 N -0.557 5.557 16 Si 0.737 3.263 17 H -0.187 1.187 18 H -0.184 1.184 19 H -0.159 1.159 20 C -0.136 4.136 21 N -0.151 5.151 22 N -0.159 5.159 23 C -0.050 4.050 24 H 0.108 0.892 25 H 0.110 0.890 26 H 0.116 0.884 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.248 0.752 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.086 0.914 34 H 0.212 0.788 35 H 0.103 0.897 36 H 0.134 0.866 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.583 -25.791 -10.407 30.127 hybrid contribution 1.514 0.914 0.295 1.793 sum -10.069 -24.877 -10.112 28.679 Atomic orbital electron populations 1.20687 0.84789 1.05496 1.04572 1.21203 0.95932 0.86362 0.99428 1.19801 0.93184 0.94582 1.19975 1.18933 0.89085 0.83654 0.95755 0.90518 1.22114 1.02314 1.01190 0.95308 1.45807 1.11217 1.17489 1.61574 1.19872 0.89133 0.81885 0.76640 1.90675 1.22534 1.73611 1.56841 1.23285 1.00610 0.97528 1.04962 1.84654 1.13287 1.17548 1.79044 1.22482 0.92670 1.06689 1.45810 0.92049 1.25590 1.00444 0.96541 0.93550 1.70020 1.29048 1.15940 1.40675 0.85851 0.80395 0.79076 0.80952 1.18712 1.18407 1.15862 1.23883 0.98176 0.92158 0.99359 1.77324 0.98188 1.13287 1.26257 1.48751 1.03254 1.07372 1.56480 1.22203 1.02399 0.75783 1.04594 0.89211 0.88969 0.88408 0.93729 0.91919 0.89888 0.75159 0.87066 0.86782 0.91394 0.78830 0.89733 0.86648 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 9.89 71.23 0.70 -0.21 16 2 C 0.10 1.67 6.93 41.41 0.29 1.96 16 3 C -0.26 -5.28 5.24 -20.14 -0.11 -5.38 16 4 C 0.23 5.16 2.55 44.25 0.11 5.28 16 5 H 0.08 1.97 7.57 -2.39 -0.02 1.95 16 6 C -0.15 -3.05 9.47 71.98 0.68 -2.37 16 7 N -0.71 -17.58 5.03 -446.08 -2.25 -19.83 16 8 C 0.54 18.58 7.81 87.66 0.68 19.26 16 9 O -0.56 -23.45 15.52 -3.02 -0.05 -23.50 16 10 C -0.11 -4.28 6.16 71.24 0.44 -3.84 16 11 S -0.17 -8.70 18.55 -56.49 -1.05 -9.75 16 12 C -0.53 -31.00 10.04 67.95 0.68 -30.32 16 13 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 14 C 0.04 2.60 5.50 84.86 0.47 3.06 16 15 N -0.92 -56.41 13.97 21.65 0.30 -56.11 16 16 Si 0.92 45.19 27.74 68.60 1.90 47.09 16 17 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.23 -11.51 6.74 99.48 0.67 -10.84 16 20 C 0.05 1.02 11.20 85.24 0.95 1.98 16 21 N -0.33 -7.47 12.58 -57.02 -0.72 -8.19 16 22 N -0.38 -6.51 4.01 -356.02 -1.43 -7.94 16 23 C 0.09 0.72 11.28 127.77 1.44 2.16 16 24 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.09 0.85 6.90 -2.39 -0.02 0.84 16 26 H 0.10 0.39 7.07 -2.38 -0.02 0.38 16 27 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.29 7.15 -2.39 -0.02 1.28 16 30 H 0.41 7.94 6.91 -92.71 -0.64 7.30 16 31 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 32 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 33 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 34 H 0.20 3.08 6.98 -2.91 -0.02 3.06 16 35 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.12 0.23 7.04 -2.39 -0.02 0.21 16 37 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -78.46 327.38 3.48 -74.99 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.41 Total: 11.65 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 6.35 Total: -8.42 kcal Atomic # 7 Polarization: -87.97 SS G_CDS: -4.09 Total: -92.06 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.05 Total: -23.50 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.05 Total: -9.75 kcal Total: -78.46 3.48 -74.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042045854.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.731 kcal (2) G-P(sol) polarization free energy of solvation -78.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds