Wall clock time and date at job start Fri Apr 10 2020 15:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81404 * 102.99989 * 2 1 4 4 H 1.09000 * 109.46806 * 55.00334 * 3 2 1 5 5 C 1.52998 * 109.46854 * 295.00191 * 3 2 1 6 6 C 1.50698 * 109.46869 * 174.99888 * 3 2 1 7 7 O 1.21293 * 120.00006 * 25.00314 * 6 3 2 8 8 N 1.34777 * 119.99538 * 204.99657 * 6 3 2 9 9 C 1.39481 * 119.99601 * 179.72258 * 8 6 3 10 10 C 1.36102 * 126.21517 * 359.97275 * 9 8 6 11 11 C 1.39757 * 107.82571 * 179.89906 * 10 9 8 12 12 C 1.50706 * 125.83951 * 180.12605 * 11 10 9 13 13 N 1.30850 * 108.32469 * 0.36252 * 11 10 9 14 14 N 1.35256 * 126.21317 * 180.27611 * 9 8 6 15 15 C 1.46502 * 126.05037 * 359.93266 * 14 9 8 16 16 C 1.50698 * 109.47108 * 89.99962 * 15 14 9 17 17 H 1.08005 * 119.99848 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00283 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99955 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 119.99751 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47379 * 90.00427 * 20 18 16 22 22 H 1.48506 * 109.47246 * 210.00242 * 20 18 16 23 23 H 1.48497 * 109.47171 * 329.99841 * 20 18 16 24 24 H 1.09000 * 109.46817 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47034 * 299.99694 * 1 2 3 26 26 H 1.08993 * 109.47227 * 59.99947 * 1 2 3 27 27 H 1.08998 * 109.46780 * 180.02562 * 5 3 2 28 28 H 1.09002 * 109.46817 * 299.99851 * 5 3 2 29 29 H 1.08995 * 109.47397 * 60.00306 * 5 3 2 30 30 H 0.97001 * 120.00485 * 0.02562 * 8 6 3 31 31 H 1.07998 * 126.09264 * 359.97438 * 10 9 8 32 32 H 1.09007 * 109.46711 * 270.25700 * 12 11 10 33 33 H 1.08994 * 109.46961 * 30.25203 * 12 11 10 34 34 H 1.09000 * 109.47150 * 150.25668 * 12 11 10 35 35 H 1.08997 * 109.47539 * 209.99897 * 15 14 9 36 36 H 1.09003 * 109.47049 * 330.00402 * 15 14 9 37 37 H 0.96999 * 119.99726 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8419 5 6 1.7427 2.4015 -1.3073 6 6 3.7142 1.9385 0.1239 7 8 4.4585 1.0530 -0.2409 8 7 4.2216 3.0756 0.6399 9 6 5.6024 3.2315 0.7599 10 6 6.5487 2.3224 0.3986 11 6 7.8014 2.8727 0.6834 12 6 9.1326 2.2094 0.4401 13 7 7.6208 4.0604 1.2021 14 7 6.2440 4.3113 1.2616 15 6 5.6111 5.5284 1.7757 16 6 5.3447 5.3716 3.2506 17 1 5.6198 4.4569 3.7548 18 6 4.7498 6.3958 3.9565 19 7 4.5178 6.2590 5.2438 20 14 4.2748 7.9780 3.0846 21 1 2.8873 7.8613 2.5683 22 1 4.3536 9.1124 4.0398 23 1 5.2057 8.2183 1.9529 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.9883 3.4635 -1.3075 28 1 2.2354 1.9149 -2.1491 29 1 0.6635 2.2779 -1.3969 30 1 3.6264 3.7836 0.9319 31 1 6.3645 1.3495 -0.0325 32 1 9.4182 1.6341 1.3209 33 1 9.0550 1.5435 -0.4193 34 1 9.8873 2.9707 0.2429 35 1 6.2740 6.3786 1.6146 36 1 4.6699 5.6973 1.2525 37 1 4.0996 6.9797 5.7404 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067660257.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:21 Heat of formation + Delta-G solvation = 43.568951 kcal Electronic energy + Delta-G solvation = -20053.441847 eV Core-core repulsion = 16959.157794 eV Total energy + Delta-G solvation = -3094.284053 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.98804 -39.33198 -34.86099 -33.82637 -33.43706 -32.16623 -29.55689 -29.06749 -28.27125 -26.34422 -24.99613 -22.59850 -21.49285 -19.85876 -19.39770 -17.30211 -17.16784 -16.78715 -16.24380 -15.47825 -14.92915 -14.65574 -14.47910 -14.12340 -13.97641 -13.72749 -13.30286 -13.10306 -12.74655 -12.72886 -12.59832 -12.31265 -12.19191 -12.00279 -11.91164 -11.81718 -11.17416 -10.87234 -10.52841 -10.26594 -10.05274 -10.00218 -9.79090 -9.58692 -8.89667 -7.99499 -7.81790 -7.53080 -6.36452 -4.41100 1.23033 2.12594 2.33994 2.72144 3.00258 3.03028 3.13941 3.15023 3.51711 3.62946 4.10883 4.40133 4.57653 4.76604 4.89380 4.89705 4.93253 5.21687 5.27651 5.34822 5.50185 5.57396 5.77102 6.00206 6.01699 6.08626 6.18649 6.26497 6.33190 6.60500 6.71735 7.16820 7.39571 7.48023 7.70608 8.10101 8.24530 8.53534 8.70238 9.17933 10.75774 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.012517 B = 0.005852 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.484329 B = 4783.746066 C = 6422.455009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.182 6.182 3 C -0.091 4.091 4 H 0.113 0.887 5 C -0.143 4.143 6 C 0.541 3.459 7 O -0.492 6.492 8 N -0.635 5.635 9 C 0.304 3.696 10 C -0.290 4.290 11 C 0.056 3.944 12 C -0.063 4.063 13 N -0.281 5.281 14 N -0.343 5.343 15 C 0.230 3.770 16 C -0.546 4.546 17 H 0.082 0.918 18 C 0.080 3.920 19 N -0.882 5.882 20 Si 0.871 3.129 21 H -0.272 1.272 22 H -0.278 1.278 23 H -0.263 1.263 24 H 0.104 0.896 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.415 0.585 31 H 0.164 0.836 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.034 0.966 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.706 -7.480 -12.576 16.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.043 5.957 3 C -0.223 4.223 4 H 0.131 0.869 5 C -0.202 4.202 6 C 0.325 3.675 7 O -0.364 6.364 8 N -0.282 5.282 9 C 0.082 3.918 10 C -0.322 4.322 11 C -0.109 4.109 12 C -0.122 4.122 13 N -0.106 5.106 14 N -0.128 5.128 15 C 0.111 3.889 16 C -0.584 4.584 17 H 0.100 0.900 18 C -0.124 4.124 19 N -0.519 5.519 20 Si 0.697 3.303 21 H -0.197 1.197 22 H -0.203 1.203 23 H -0.187 1.187 24 H 0.122 0.878 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.252 0.748 31 H 0.181 0.819 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.132 -7.750 -12.135 15.650 hybrid contribution -2.112 1.835 -0.112 2.800 sum -8.244 -5.915 -12.247 15.904 Atomic orbital electron populations 1.23561 0.95597 1.06677 1.05052 1.87419 1.04949 1.05438 1.97869 1.23253 0.96109 0.98958 1.03951 0.86892 1.22017 1.02025 1.01341 0.94803 1.19530 0.89011 0.81400 0.77590 1.90681 1.59385 1.40052 1.46311 1.42632 1.04411 1.19606 1.61579 1.17866 0.82808 0.90908 1.00194 1.21289 0.89589 1.02987 1.18331 1.22063 0.96174 0.93238 0.99473 1.20042 0.90945 0.99283 1.01902 1.77371 0.91646 1.17751 1.23856 1.48894 1.03172 1.13838 1.46926 1.19934 0.92287 0.80713 0.95997 1.21201 1.41866 1.04647 0.90732 0.90017 1.24824 0.94779 0.98072 0.94766 1.69874 1.41495 1.33418 1.07081 0.86930 0.79444 0.83664 0.80279 1.19713 1.20298 1.18724 0.87760 0.90341 0.90348 0.90950 0.90335 0.91022 0.74830 0.81915 0.91093 0.91015 0.91479 0.92684 0.94822 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 10.45 101.05 1.06 -0.01 16 2 S -0.18 -2.21 21.10 -107.50 -2.27 -4.48 16 3 C -0.09 -1.06 3.17 -27.88 -0.09 -1.14 16 4 H 0.11 1.14 8.14 -51.92 -0.42 0.72 16 5 C -0.14 -1.29 9.08 37.16 0.34 -0.95 16 6 C 0.54 8.55 6.92 -10.99 -0.08 8.47 16 7 O -0.49 -9.15 13.27 5.55 0.07 -9.08 16 8 N -0.64 -10.85 5.42 -11.46 -0.06 -10.91 16 9 C 0.30 6.33 7.66 -153.16 -1.17 5.15 16 10 C -0.29 -5.93 9.58 -39.78 -0.38 -6.31 16 11 C 0.06 1.11 7.21 -82.44 -0.59 0.52 16 12 C -0.06 -0.93 10.44 36.01 0.38 -0.55 16 13 N -0.28 -6.46 12.56 33.65 0.42 -6.04 16 14 N -0.34 -7.85 3.60 -61.57 -0.22 -8.08 16 15 C 0.23 5.34 5.07 -5.19 -0.03 5.31 16 16 C -0.55 -14.85 9.94 -34.44 -0.34 -15.19 16 17 H 0.08 2.55 8.06 -52.48 -0.42 2.13 16 18 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 19 N -0.88 -25.52 13.96 55.43 0.77 -24.74 16 20 Si 0.87 19.29 27.47 -169.99 -4.67 14.62 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 24 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.49 7.14 -51.93 -0.37 0.12 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.49 6.92 -51.93 -0.36 0.13 16 30 H 0.42 6.32 7.97 -40.82 -0.33 5.99 16 31 H 0.16 3.26 5.83 -52.49 -0.31 2.95 16 32 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.30 7.20 -51.93 -0.37 0.93 16 36 H 0.03 0.70 6.93 -51.93 -0.36 0.34 16 37 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 326.62 15.07 4.92 4.92 Total: -1.00 -33.00 326.62 -7.10 -40.11 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.07 Total: 6.29 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -1.01 Total: -2.62 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.91 Total: -49.77 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.07 Total: -9.08 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.67 Total: 14.62 kcal Atomic # 16 Polarization: -2.21 SS G_CDS: -2.27 Total: -4.48 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.00 -7.10 -40.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067660257.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.676 kcal (2) G-P(sol) polarization free energy of solvation -33.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds