Wall clock time and date at job start Fri Apr 10 2020 15:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30834 * 125.89652 * 2 1 4 4 N 1.40085 * 108.20502 * 179.97438 * 3 2 1 5 5 C 1.46499 * 126.03983 * 180.02562 * 4 3 2 6 6 C 1.34949 * 107.92772 * 359.97438 * 4 3 2 7 7 C 1.35319 * 107.74072 * 359.75647 * 6 4 3 8 8 C 1.50698 * 126.03879 * 180.27586 * 7 6 4 9 9 H 1.09003 * 109.46970 * 220.13830 * 8 7 6 10 10 C 1.52998 * 109.47479 * 100.13706 * 8 7 6 11 11 N 1.46498 * 109.47253 * 340.13469 * 8 7 6 12 12 C 1.34779 * 120.00397 * 205.00377 * 11 8 7 13 13 O 1.21278 * 119.99726 * 0.02562 * 12 11 8 14 14 C 1.50697 * 119.99999 * 179.97438 * 12 11 8 15 15 S 1.81008 * 109.47006 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00176 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99453 * 359.97438 * 16 15 14 18 18 C 1.38793 * 120.00149 * 179.97438 * 16 15 14 19 19 N 1.31631 * 120.00194 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99988 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47124 * 89.99966 * 20 18 16 22 22 H 1.48503 * 109.47241 * 210.00136 * 20 18 16 23 23 H 1.48499 * 109.46981 * 329.99762 * 20 18 16 24 24 H 1.09002 * 109.47152 * 90.02599 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.02699 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.02680 * 1 2 3 27 27 H 1.08992 * 109.47808 * 89.97207 * 5 4 3 28 28 H 1.09003 * 109.47286 * 209.97479 * 5 4 3 29 29 H 1.09002 * 109.46991 * 329.96604 * 5 4 3 30 30 H 1.07999 * 126.13039 * 179.97438 * 6 4 3 31 31 H 1.09003 * 109.47296 * 180.02562 * 10 8 7 32 32 H 1.08995 * 109.46832 * 299.99973 * 10 8 7 33 33 H 1.08998 * 109.47156 * 59.99691 * 10 8 7 34 34 H 0.97006 * 119.99988 * 25.00172 * 11 8 7 35 35 H 1.08993 * 109.47432 * 299.99881 * 14 12 11 36 36 H 1.09003 * 109.47201 * 60.00722 * 14 12 11 37 37 H 0.96995 * 120.00111 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7899 1.5008 0.0013 6 6 3.6143 -0.7153 0.0015 7 6 2.3272 -1.1330 0.0070 8 6 1.8600 -2.5657 0.0158 9 1 0.9987 -2.6710 -0.6440 10 6 1.4641 -2.9644 1.4388 11 7 2.9424 -3.4352 -0.4517 12 6 2.6556 -4.6304 -1.0048 13 8 1.5014 -4.9858 -1.1158 14 6 3.7691 -5.5245 -1.4862 15 16 3.0676 -7.0456 -2.1721 16 6 4.5466 -7.8795 -2.6428 17 1 5.5064 -7.4148 -2.4716 18 6 4.4783 -9.1336 -3.2336 19 7 5.5832 -9.7564 -3.5857 20 14 2.8182 -9.9370 -3.5303 21 1 2.3144 -9.5510 -4.8729 22 1 2.9634 -11.4133 -3.4617 23 1 1.8571 -9.4855 -2.4922 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 0.8902 0.5134 26 1 -0.3633 -0.8898 0.5143 27 1 5.0821 1.7160 1.0290 28 1 5.6097 0.9981 -0.5118 29 1 4.5567 2.4331 -0.5130 30 1 4.4892 -1.3485 0.0018 31 1 1.1266 -4.0008 1.4452 32 1 2.3253 -2.8591 2.0985 33 1 0.6587 -2.3175 1.7867 34 1 3.8655 -3.1507 -0.3633 35 1 4.3420 -5.0086 -2.2566 36 1 4.4238 -5.7714 -0.6505 37 1 5.5354 -10.6329 -3.9982 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068155063.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:16 Heat of formation + Delta-G solvation = 33.811237 kcal Electronic energy + Delta-G solvation = -19382.825195 eV Core-core repulsion = 16288.118016 eV Total energy + Delta-G solvation = -3094.707179 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.62370 -39.26879 -35.70643 -34.02976 -32.43655 -31.49664 -30.25804 -29.17394 -28.42182 -25.81588 -25.60347 -23.07962 -21.42381 -19.93657 -19.63584 -18.00919 -17.06859 -16.26931 -15.86265 -15.80019 -15.02873 -14.94727 -14.62749 -13.96238 -13.92143 -13.68342 -13.48586 -13.22554 -13.10599 -12.78929 -12.72647 -12.39312 -12.35309 -11.98304 -11.91747 -11.26561 -11.25291 -11.00174 -10.83204 -10.57332 -9.84876 -9.48457 -9.46133 -9.06484 -8.98852 -8.53527 -8.48994 -6.90741 -6.28683 -4.00136 1.60251 2.22150 2.45349 2.79027 3.01584 3.32270 3.35777 3.51430 3.67725 4.16476 4.33820 4.46073 4.71582 4.73484 4.78841 4.86709 5.04098 5.05043 5.10547 5.26503 5.31106 5.36370 5.43277 5.56616 5.61334 5.74260 5.77654 5.81838 6.01624 6.04778 6.19041 6.41131 6.63091 6.72658 7.45988 7.64391 7.94420 8.41607 8.52705 9.17699 10.80610 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.030497 B = 0.003379 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.897072 B = 8283.452503 C = 8894.161042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.088 3.912 3 N -0.296 5.296 4 N -0.376 5.376 5 C 0.102 3.898 6 C 0.061 3.939 7 C -0.237 4.237 8 C 0.224 3.776 9 H 0.094 0.906 10 C -0.156 4.156 11 N -0.731 5.731 12 C 0.533 3.467 13 O -0.518 6.518 14 C -0.125 4.125 15 S -0.140 6.140 16 C -0.522 4.522 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.881 5.881 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.172 0.828 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.394 0.606 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.416 21.813 9.601 24.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.079 4.079 3 N -0.119 5.119 4 N -0.158 5.158 5 C -0.039 4.039 6 C -0.085 4.085 7 C -0.249 4.249 8 C 0.118 3.882 9 H 0.112 0.888 10 C -0.215 4.215 11 N -0.385 5.385 12 C 0.319 3.681 13 O -0.392 6.392 14 C -0.275 4.275 15 S 0.086 5.914 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.518 5.518 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.159 1.159 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.189 0.811 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.228 0.772 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.064 22.434 9.332 24.820 hybrid contribution 1.658 -0.798 -0.097 1.842 sum -3.406 21.636 9.235 23.770 Atomic orbital electron populations 1.20262 0.86494 1.03496 1.03367 1.22164 0.96950 0.89751 0.99064 1.77309 0.86355 1.22600 1.25661 1.48314 1.05573 1.04616 1.57261 1.21865 0.83604 0.95044 1.03373 1.22159 0.99097 0.84982 1.02295 1.20048 0.92197 0.95773 1.16883 1.18993 0.90385 0.82937 0.95865 0.88776 1.22162 1.01423 1.02260 0.95651 1.46048 1.09562 1.18842 1.64091 1.20243 0.90437 0.81033 0.76426 1.90694 1.21261 1.72761 1.54491 1.23285 0.99905 1.00139 1.04194 1.84791 1.14182 1.13597 1.78855 1.22324 0.92212 1.05899 1.46477 0.89438 1.24713 0.97084 0.95860 0.93661 1.69937 1.27144 1.14847 1.39868 0.86732 0.84657 0.79376 0.81082 1.19206 1.19968 1.15856 0.90222 0.90829 0.90046 0.90740 0.89324 0.89305 0.81097 0.91534 0.92678 0.91803 0.77178 0.88606 0.88506 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.26 36.01 0.37 -0.29 16 2 C 0.09 0.98 7.22 -82.41 -0.59 0.39 16 3 N -0.30 -3.56 12.58 33.67 0.42 -3.13 16 4 N -0.38 -3.66 4.01 -68.16 -0.27 -3.94 16 5 C 0.10 0.55 11.47 59.85 0.69 1.24 16 6 C 0.06 0.57 10.67 -17.22 -0.18 0.39 16 7 C -0.24 -2.59 5.26 -105.05 -0.55 -3.14 16 8 C 0.22 2.67 2.67 -69.09 -0.18 2.49 16 9 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 10 C -0.16 -1.72 9.47 37.16 0.35 -1.37 16 11 N -0.73 -9.30 5.02 -54.94 -0.28 -9.58 16 12 C 0.53 9.29 7.81 -10.99 -0.09 9.20 16 13 O -0.52 -10.94 15.52 5.56 0.09 -10.85 16 14 C -0.12 -2.37 6.16 36.00 0.22 -2.15 16 15 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 16 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 17 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 18 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 19 N -0.88 -26.55 13.97 55.49 0.78 -25.78 16 20 Si 0.86 21.74 27.74 -169.99 -4.71 17.03 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.23 -5.93 6.74 56.52 0.38 -5.55 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.61 7.08 -51.93 -0.37 0.25 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.17 1.09 6.91 -52.49 -0.36 0.73 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.60 7.27 -51.93 -0.38 0.22 16 34 H 0.39 3.85 6.88 -40.82 -0.28 3.57 16 35 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 36 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 37 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 LS Contribution 330.20 15.07 4.98 4.98 Total: -1.00 -35.92 330.20 -5.92 -41.84 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.16 Total: 0.18 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 0.24 Total: -5.20 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.65 Total: -42.43 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.92 -5.92 -41.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068155063.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.649 kcal (2) G-P(sol) polarization free energy of solvation -35.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds