Wall clock time and date at job start Fri Apr 10 2020 15:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30834 * 125.89652 * 2 1 4 4 N 1.40085 * 108.20502 * 179.97438 * 3 2 1 5 5 C 1.46499 * 126.03983 * 180.02562 * 4 3 2 6 6 C 1.34949 * 107.92772 * 359.97438 * 4 3 2 7 7 C 1.35319 * 107.74072 * 359.75647 * 6 4 3 8 8 C 1.50698 * 126.03879 * 180.27586 * 7 6 4 9 9 H 1.09003 * 109.46970 * 220.13830 * 8 7 6 10 10 C 1.52998 * 109.47479 * 100.13706 * 8 7 6 11 11 N 1.46498 * 109.47253 * 340.13469 * 8 7 6 12 12 C 1.34779 * 120.00397 * 205.00377 * 11 8 7 13 13 O 1.21278 * 119.99726 * 0.02562 * 12 11 8 14 14 C 1.50697 * 119.99999 * 179.97438 * 12 11 8 15 15 S 1.81008 * 109.47006 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00176 * 180.02562 * 15 14 12 17 17 H 1.08003 * 119.99453 * 359.97438 * 16 15 14 18 18 C 1.38793 * 120.00149 * 179.97438 * 16 15 14 19 19 N 1.31631 * 120.00194 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99988 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47124 * 89.99966 * 20 18 16 22 22 H 1.48503 * 109.47241 * 210.00136 * 20 18 16 23 23 H 1.48499 * 109.46981 * 329.99762 * 20 18 16 24 24 H 1.09002 * 109.47152 * 90.02599 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.02699 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.02680 * 1 2 3 27 27 H 1.08992 * 109.47808 * 89.97207 * 5 4 3 28 28 H 1.09003 * 109.47286 * 209.97479 * 5 4 3 29 29 H 1.09002 * 109.46991 * 329.96604 * 5 4 3 30 30 H 1.07999 * 126.13039 * 179.97438 * 6 4 3 31 31 H 1.09003 * 109.47296 * 180.02562 * 10 8 7 32 32 H 1.08995 * 109.46832 * 299.99973 * 10 8 7 33 33 H 1.08998 * 109.47156 * 59.99691 * 10 8 7 34 34 H 0.97006 * 119.99988 * 25.00172 * 11 8 7 35 35 H 1.08993 * 109.47432 * 299.99881 * 14 12 11 36 36 H 1.09003 * 109.47201 * 60.00722 * 14 12 11 37 37 H 0.96995 * 120.00111 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7899 1.5008 0.0013 6 6 3.6143 -0.7153 0.0015 7 6 2.3272 -1.1330 0.0070 8 6 1.8600 -2.5657 0.0158 9 1 0.9987 -2.6710 -0.6440 10 6 1.4641 -2.9644 1.4388 11 7 2.9424 -3.4352 -0.4517 12 6 2.6556 -4.6304 -1.0048 13 8 1.5014 -4.9858 -1.1158 14 6 3.7691 -5.5245 -1.4862 15 16 3.0676 -7.0456 -2.1721 16 6 4.5466 -7.8795 -2.6428 17 1 5.5064 -7.4148 -2.4716 18 6 4.4783 -9.1336 -3.2336 19 7 5.5832 -9.7564 -3.5857 20 14 2.8182 -9.9370 -3.5303 21 1 2.3144 -9.5510 -4.8729 22 1 2.9634 -11.4133 -3.4617 23 1 1.8571 -9.4855 -2.4922 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 0.8902 0.5134 26 1 -0.3633 -0.8898 0.5143 27 1 5.0821 1.7160 1.0290 28 1 5.6097 0.9981 -0.5118 29 1 4.5567 2.4331 -0.5130 30 1 4.4892 -1.3485 0.0018 31 1 1.1266 -4.0008 1.4452 32 1 2.3253 -2.8591 2.0985 33 1 0.6587 -2.3175 1.7867 34 1 3.8655 -3.1507 -0.3633 35 1 4.3420 -5.0086 -2.2566 36 1 4.4238 -5.7714 -0.6505 37 1 5.5354 -10.6329 -3.9982 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068155063.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:15 Heat of formation + Delta-G solvation = 8.316232 kcal Electronic energy + Delta-G solvation = -19383.930741 eV Core-core repulsion = 16288.118016 eV Total energy + Delta-G solvation = -3095.812725 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.39035 -40.59087 -36.79550 -34.79942 -34.65270 -32.68085 -30.90002 -30.24715 -29.47848 -27.82989 -26.45728 -23.96908 -22.45170 -20.89936 -20.63518 -19.82245 -18.23279 -17.51757 -17.10952 -16.77384 -16.58480 -16.36131 -15.80715 -15.26646 -14.98706 -14.80147 -14.63573 -14.32594 -14.16099 -13.93697 -13.50855 -13.33875 -13.30125 -13.09164 -12.99762 -12.87470 -12.80943 -12.58125 -12.15151 -11.85883 -11.61996 -11.15381 -10.92080 -10.50348 -10.22688 -10.19660 -9.32231 -8.96718 -8.50031 -6.20131 0.87559 1.01391 1.33159 1.48700 1.56179 1.60156 1.63219 1.69931 2.24851 2.28986 2.74451 2.88533 3.49968 3.81410 3.88937 4.06193 4.19101 4.25813 4.38064 4.43427 4.45245 4.46655 4.50286 4.69834 4.75055 4.78939 4.83930 5.03137 5.06928 5.11923 5.30352 5.53487 5.68027 5.72437 6.08250 6.13174 6.50665 6.70601 6.95604 7.23835 8.62368 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.030497 B = 0.003379 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.897072 B = 8283.452503 C = 8894.161042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.076 3.924 3 N -0.329 5.329 4 N -0.377 5.377 5 C 0.093 3.907 6 C 0.068 3.932 7 C -0.256 4.256 8 C 0.231 3.769 9 H 0.075 0.925 10 C -0.150 4.150 11 N -0.707 5.707 12 C 0.538 3.462 13 O -0.559 6.559 14 C -0.111 4.111 15 S -0.175 6.175 16 C -0.528 4.528 17 H 0.063 0.937 18 C 0.045 3.955 19 N -0.918 5.918 20 Si 0.913 3.087 21 H -0.263 1.263 22 H -0.260 1.260 23 H -0.236 1.236 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.203 0.797 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.412 0.588 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.206 23.064 10.345 25.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 N -0.153 5.153 4 N -0.158 5.158 5 C -0.047 4.047 6 C -0.080 4.080 7 C -0.269 4.269 8 C 0.125 3.875 9 H 0.093 0.907 10 C -0.209 4.209 11 N -0.361 5.361 12 C 0.324 3.676 13 O -0.437 6.437 14 C -0.262 4.262 15 S 0.051 5.949 16 C -0.675 4.675 17 H 0.081 0.919 18 C -0.160 4.160 19 N -0.556 5.556 20 Si 0.735 3.265 21 H -0.188 1.188 22 H -0.184 1.184 23 H -0.159 1.159 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.132 0.868 29 H 0.108 0.892 30 H 0.220 0.780 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.249 0.751 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.816 23.743 10.096 26.246 hybrid contribution 1.710 -0.995 -0.268 1.997 sum -3.106 22.747 9.828 24.974 Atomic orbital electron populations 1.20336 0.85424 1.04217 1.03722 1.22518 0.97964 0.89730 0.98743 1.77264 0.87665 1.23404 1.26990 1.48679 1.05758 1.05257 1.56137 1.22214 0.82813 0.94946 1.04736 1.22634 0.99552 0.85313 1.00477 1.19952 0.93053 0.94824 1.19027 1.18927 0.89313 0.83431 0.95832 0.90710 1.22103 1.02376 1.01152 0.95254 1.45804 1.11036 1.17142 1.62094 1.19918 0.89151 0.81970 0.76595 1.90689 1.22539 1.73910 1.56557 1.23275 1.00534 0.97332 1.05070 1.84735 1.13376 1.17194 1.79584 1.22476 0.92677 1.06269 1.46126 0.91878 1.25553 1.00327 0.96551 0.93552 1.70014 1.29095 1.15599 1.40928 0.85878 0.80545 0.79114 0.80921 1.18777 1.18445 1.15935 0.90021 0.90096 0.89327 0.89337 0.86801 0.89232 0.78017 0.93691 0.91604 0.90277 0.75083 0.86870 0.86630 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 10.26 71.24 0.73 -0.54 16 2 C 0.08 1.62 7.22 43.10 0.31 1.93 16 3 N -0.33 -7.46 12.58 -47.38 -0.60 -8.06 16 4 N -0.38 -6.44 4.01 -369.57 -1.48 -7.92 16 5 C 0.09 0.75 11.47 127.77 1.47 2.21 16 6 C 0.07 1.07 10.67 83.54 0.89 1.97 16 7 C -0.26 -5.09 5.26 -20.14 -0.11 -5.20 16 8 C 0.23 5.12 2.67 44.24 0.12 5.24 16 9 H 0.07 1.99 7.58 -2.39 -0.02 1.98 16 10 C -0.15 -3.07 9.47 71.98 0.68 -2.39 16 11 N -0.71 -16.33 5.02 -446.11 -2.24 -18.57 16 12 C 0.54 17.92 7.81 87.66 0.68 18.60 16 13 O -0.56 -23.31 15.52 -3.02 -0.05 -23.35 16 14 C -0.11 -4.04 6.16 71.23 0.44 -3.60 16 15 S -0.18 -8.74 18.55 -56.49 -1.05 -9.79 16 16 C -0.53 -30.40 10.04 67.95 0.68 -29.72 16 17 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 18 C 0.05 2.65 5.50 84.86 0.47 3.12 16 19 N -0.92 -55.67 13.97 21.65 0.30 -55.37 16 20 Si 0.91 44.79 27.74 68.60 1.90 46.70 16 21 H -0.26 -12.61 7.11 99.48 0.71 -11.91 16 22 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 23 H -0.24 -11.50 6.74 99.48 0.67 -10.83 16 24 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.09 1.26 7.08 -2.38 -0.02 1.24 16 27 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.20 1.70 6.91 -2.91 -0.02 1.68 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.36 7.27 -2.39 -0.02 1.35 16 34 H 0.41 6.60 6.88 -92.70 -0.64 5.96 16 35 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 36 H 0.12 3.79 8.14 -2.39 -0.02 3.77 16 37 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -77.93 330.20 3.56 -74.37 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.40 Total: 10.37 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: 6.37 Total: -8.38 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -4.02 Total: -89.91 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.05 Total: -23.35 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.90 Total: 46.70 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.05 Total: -9.79 kcal Total: -77.93 3.56 -74.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068155063.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.690 kcal (2) G-P(sol) polarization free energy of solvation -77.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds