Wall clock time and date at job start Fri Apr 10 2020 15:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38724 * 120.39472 * 2 1 4 4 C 1.38691 * 118.57280 * 179.97438 * 3 2 1 5 5 N 1.32196 * 119.20229 * 359.75107 * 4 3 2 6 6 C 1.32641 * 120.73463 * 0.50691 * 5 4 3 7 7 C 1.48168 * 119.22697 * 179.76283 * 6 5 4 8 8 C 1.39547 * 120.04528 * 179.97438 * 7 6 5 9 9 C 1.37734 * 119.96305 * 180.23335 * 8 7 6 10 10 C 1.39201 * 120.03695 * 359.48866 * 9 8 7 11 11 N 1.39233 * 119.96136 * 180.25240 * 10 9 8 12 12 C 1.34775 * 120.00025 * 144.84262 * 11 10 9 13 13 O 1.21750 * 119.99989 * 4.58785 * 12 11 10 14 14 C 1.46116 * 119.99995 * 184.58345 * 12 11 10 15 15 H 1.07998 * 120.00122 * 359.97438 * 14 12 11 16 16 C 1.40135 * 120.00231 * 180.02562 * 14 12 11 17 17 N 1.30638 * 119.99638 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00208 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47296 * 89.99507 * 18 16 14 20 20 H 1.48500 * 109.47153 * 209.99572 * 18 16 14 21 21 H 1.48502 * 109.46784 * 329.99383 * 18 16 14 22 22 C 1.39207 * 120.08553 * 0.28247 * 10 9 8 23 23 C 1.37739 * 120.03704 * 359.97438 * 22 10 9 24 24 N 1.32160 * 120.39703 * 179.97438 * 2 1 3 25 25 H 1.09007 * 109.46650 * 270.01584 * 1 2 3 26 26 H 1.09004 * 109.47125 * 30.01730 * 1 2 3 27 27 H 1.09003 * 109.47230 * 150.02056 * 1 2 3 28 28 H 1.08001 * 120.71843 * 0.02562 * 3 2 1 29 29 H 1.07996 * 120.39717 * 180.02562 * 4 3 2 30 30 H 1.08006 * 120.01797 * 359.97438 * 8 7 6 31 31 H 1.07995 * 119.98242 * 179.76736 * 9 8 7 32 32 H 0.97001 * 119.99739 * 324.85076 * 11 10 9 33 33 H 0.97003 * 119.99726 * 180.02562 * 17 16 14 34 34 H 1.08004 * 119.98455 * 179.97438 * 22 10 9 35 35 H 1.08003 * 120.01495 * 180.02562 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2089 1.1966 0.0000 4 6 3.5952 1.1525 0.0005 5 7 4.2031 -0.0214 0.0061 6 6 3.5025 -1.1477 0.0009 7 6 4.2183 -2.4449 0.0020 8 6 3.4983 -3.6403 -0.0027 9 6 4.1654 -4.8452 0.0031 10 6 5.5572 -4.8712 0.0031 11 7 6.2299 -6.0902 0.0038 12 6 7.3910 -6.2194 -0.6683 13 8 7.8943 -5.2500 -1.2061 14 6 8.0458 -7.5230 -0.7515 15 1 7.5996 -8.3828 -0.2740 16 6 9.2533 -7.6573 -1.4498 17 7 9.7933 -6.6171 -2.0269 18 14 10.0900 -9.3240 -1.5567 19 1 9.6018 -10.0469 -2.7584 20 1 11.5596 -9.1347 -1.6560 21 1 9.7740 -10.1154 -0.3405 22 6 6.2773 -3.6798 0.0031 23 6 5.6135 -2.4729 0.0025 24 7 2.1758 -1.1399 0.0005 25 1 -0.3633 0.0003 1.0278 26 1 -0.3633 0.8899 -0.5141 27 1 -0.3634 -0.8902 -0.5135 28 1 1.6872 2.1422 0.0004 29 1 4.1709 2.0662 0.0010 30 1 2.4184 -3.6205 -0.0068 31 1 3.6084 -5.7705 0.0032 32 1 5.8629 -6.8464 0.4878 33 1 10.6289 -6.7102 -2.5106 34 1 7.3571 -3.7018 0.0034 35 1 6.1726 -1.5489 0.0021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153835369.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:06 Heat of formation + Delta-G solvation = 32.379827 kcal Electronic energy + Delta-G solvation = -20309.432660 eV Core-core repulsion = 17079.219459 eV Total energy + Delta-G solvation = -3230.213201 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.98155 -39.11954 -36.98584 -34.50676 -33.80085 -32.65603 -32.26004 -30.39634 -29.16086 -28.34635 -26.39792 -24.18620 -23.19573 -22.00473 -21.17239 -19.77840 -17.75273 -17.26787 -16.98875 -16.15087 -15.67327 -15.49979 -15.12574 -14.40672 -14.36213 -13.95105 -13.48861 -13.32165 -13.28672 -13.00731 -12.69653 -12.57096 -12.41783 -11.91071 -11.64083 -11.26901 -11.12212 -10.80646 -10.69879 -10.62665 -10.55393 -10.36326 -9.91409 -9.16777 -9.09912 -8.79972 -8.41923 -7.75513 -7.07746 -6.37781 -4.85588 0.60993 1.10091 2.01545 2.09803 3.05819 3.12943 3.16287 3.77397 3.85004 3.96913 4.11686 4.32359 4.40295 4.54129 4.61333 4.89518 5.02940 5.19080 5.28175 5.37806 5.43803 5.58507 5.59372 5.68926 5.72227 5.98196 6.19685 6.30400 6.33980 6.65280 6.81436 7.03346 7.09453 7.17029 7.25050 7.38650 7.68691 8.01224 8.12348 8.18632 8.81580 9.15745 10.33909 10.52824 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.046446 B = 0.003066 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.704960 B = 9131.072377 C = 9590.767602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.178 3.822 3 C -0.255 4.255 4 C 0.156 3.844 5 N -0.523 5.523 6 C 0.389 3.611 7 C -0.114 4.114 8 C -0.044 4.044 9 C -0.191 4.191 10 C 0.220 3.780 11 N -0.697 5.697 12 C 0.541 3.459 13 O -0.557 6.557 14 C -0.537 4.537 15 H 0.073 0.927 16 C 0.086 3.914 17 N -0.757 5.757 18 Si 0.914 3.086 19 H -0.270 1.270 20 H -0.277 1.277 21 H -0.263 1.263 22 C -0.145 4.145 23 C -0.045 4.045 24 N -0.522 5.522 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.142 0.858 29 H 0.166 0.834 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.395 0.605 33 H 0.273 0.727 34 H 0.148 0.852 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.780 10.704 4.873 18.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.030 3.970 3 C -0.278 4.278 4 C -0.011 4.011 5 N -0.237 5.237 6 C 0.127 3.873 7 C -0.117 4.117 8 C -0.064 4.064 9 C -0.212 4.212 10 C 0.118 3.882 11 N -0.339 5.339 12 C 0.348 3.652 13 O -0.438 6.438 14 C -0.573 4.573 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.385 5.385 18 Si 0.738 3.262 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.166 4.166 23 C -0.065 4.065 24 N -0.237 5.237 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.160 0.840 29 H 0.183 0.817 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.229 0.771 33 H 0.084 0.916 34 H 0.166 0.834 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.698 10.543 4.338 17.821 hybrid contribution -0.265 -0.232 0.080 0.361 sum -13.963 10.311 4.418 17.911 Atomic orbital electron populations 1.20767 0.88093 1.03891 1.03486 1.21690 0.97442 0.88319 0.89536 1.22651 0.96644 1.00173 1.08283 1.23189 0.92048 0.96183 0.89654 1.68436 1.41295 0.98536 1.15426 1.21462 0.85610 0.92177 0.88055 1.17833 0.92678 0.88317 1.12900 1.20855 0.99593 0.90533 0.95434 1.20844 0.92763 0.98007 1.09630 1.18242 0.90719 0.87659 0.91542 1.44193 1.26015 1.09983 1.53689 1.18416 0.78065 0.90790 0.77968 1.90634 1.63653 1.40444 1.49095 1.20844 1.07120 0.93578 1.35724 0.90904 1.25758 0.96554 0.97896 0.93370 1.69983 1.15556 1.29922 1.23056 0.86263 0.78498 0.81980 0.79460 1.19562 1.20261 1.18741 1.21477 1.02045 0.90212 1.02886 1.21125 0.92397 0.98229 0.94757 1.68260 1.09338 1.30070 1.16025 0.89852 0.90323 0.89958 0.84034 0.81684 0.85375 0.85957 0.77122 0.91649 0.83402 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.22 36.01 0.37 -0.42 16 2 C 0.18 2.06 6.82 -82.27 -0.56 1.50 16 3 C -0.26 -2.54 9.85 -39.23 -0.39 -2.93 16 4 C 0.16 1.80 11.30 -17.23 -0.19 1.60 16 5 N -0.52 -8.15 9.44 -11.16 -0.11 -8.26 16 6 C 0.39 6.51 7.55 -156.90 -1.18 5.32 16 7 C -0.11 -2.05 5.88 -104.84 -0.62 -2.67 16 8 C -0.04 -0.74 9.55 -39.28 -0.38 -1.12 16 9 C -0.19 -3.36 9.95 -39.41 -0.39 -3.76 16 10 C 0.22 4.60 6.29 -83.78 -0.53 4.07 16 11 N -0.70 -15.42 5.30 -11.20 -0.06 -15.48 16 12 C 0.54 14.77 7.57 -13.10 -0.10 14.67 16 13 O -0.56 -17.12 12.43 5.14 0.06 -17.05 16 14 C -0.54 -14.44 9.53 -35.71 -0.34 -14.78 16 15 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 16 C 0.09 2.29 5.50 -17.35 -0.10 2.19 16 17 N -0.76 -21.78 11.82 55.55 0.66 -21.13 16 18 Si 0.91 19.30 29.56 -169.99 -5.02 14.28 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 22 C -0.15 -3.15 8.67 -39.40 -0.34 -3.49 16 23 C -0.04 -0.86 9.55 -39.28 -0.38 -1.23 16 24 N -0.52 -7.84 9.38 -7.41 -0.07 -7.91 16 25 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 29 H 0.17 1.30 8.06 -52.49 -0.42 0.87 16 30 H 0.13 1.94 7.50 -52.48 -0.39 1.54 16 31 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.40 7.39 8.80 -40.82 -0.36 7.03 16 33 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 34 H 0.15 3.61 6.21 -52.48 -0.33 3.29 16 35 H 0.13 2.35 7.50 -52.48 -0.39 1.96 16 LS Contribution 312.22 15.07 4.71 4.71 Total: -1.00 -33.87 312.22 -8.51 -42.38 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -3.55 Total: 9.49 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -5.12 Total: -1.03 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.42 Total: -52.77 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: 0.06 Total: -17.05 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.87 -8.51 -42.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153835369.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.762 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds