Wall clock time and date at job start Fri Apr 10 2020 15:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38724 * 120.39472 * 2 1 4 4 C 1.38691 * 118.57280 * 179.97438 * 3 2 1 5 5 N 1.32196 * 119.20229 * 359.75107 * 4 3 2 6 6 C 1.32641 * 120.73463 * 0.50691 * 5 4 3 7 7 C 1.48168 * 119.22697 * 179.76283 * 6 5 4 8 8 C 1.39547 * 120.04528 * 179.97438 * 7 6 5 9 9 C 1.37734 * 119.96305 * 180.23335 * 8 7 6 10 10 C 1.39201 * 120.03695 * 359.48866 * 9 8 7 11 11 N 1.39233 * 119.96136 * 180.25240 * 10 9 8 12 12 C 1.34775 * 120.00025 * 144.84262 * 11 10 9 13 13 O 1.21750 * 119.99989 * 4.58785 * 12 11 10 14 14 C 1.46116 * 119.99995 * 184.58345 * 12 11 10 15 15 H 1.07998 * 120.00122 * 359.97438 * 14 12 11 16 16 C 1.40135 * 120.00231 * 180.02562 * 14 12 11 17 17 N 1.30638 * 119.99638 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00208 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47296 * 89.99507 * 18 16 14 20 20 H 1.48500 * 109.47153 * 209.99572 * 18 16 14 21 21 H 1.48502 * 109.46784 * 329.99383 * 18 16 14 22 22 C 1.39207 * 120.08553 * 0.28247 * 10 9 8 23 23 C 1.37739 * 120.03704 * 359.97438 * 22 10 9 24 24 N 1.32160 * 120.39703 * 179.97438 * 2 1 3 25 25 H 1.09007 * 109.46650 * 270.01584 * 1 2 3 26 26 H 1.09004 * 109.47125 * 30.01730 * 1 2 3 27 27 H 1.09003 * 109.47230 * 150.02056 * 1 2 3 28 28 H 1.08001 * 120.71843 * 0.02562 * 3 2 1 29 29 H 1.07996 * 120.39717 * 180.02562 * 4 3 2 30 30 H 1.08006 * 120.01797 * 359.97438 * 8 7 6 31 31 H 1.07995 * 119.98242 * 179.76736 * 9 8 7 32 32 H 0.97001 * 119.99739 * 324.85076 * 11 10 9 33 33 H 0.97003 * 119.99726 * 180.02562 * 17 16 14 34 34 H 1.08004 * 119.98455 * 179.97438 * 22 10 9 35 35 H 1.08003 * 120.01495 * 180.02562 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2089 1.1966 0.0000 4 6 3.5952 1.1525 0.0005 5 7 4.2031 -0.0214 0.0061 6 6 3.5025 -1.1477 0.0009 7 6 4.2183 -2.4449 0.0020 8 6 3.4983 -3.6403 -0.0027 9 6 4.1654 -4.8452 0.0031 10 6 5.5572 -4.8712 0.0031 11 7 6.2299 -6.0902 0.0038 12 6 7.3910 -6.2194 -0.6683 13 8 7.8943 -5.2500 -1.2061 14 6 8.0458 -7.5230 -0.7515 15 1 7.5996 -8.3828 -0.2740 16 6 9.2533 -7.6573 -1.4498 17 7 9.7933 -6.6171 -2.0269 18 14 10.0900 -9.3240 -1.5567 19 1 9.6018 -10.0469 -2.7584 20 1 11.5596 -9.1347 -1.6560 21 1 9.7740 -10.1154 -0.3405 22 6 6.2773 -3.6798 0.0031 23 6 5.6135 -2.4729 0.0025 24 7 2.1758 -1.1399 0.0005 25 1 -0.3633 0.0003 1.0278 26 1 -0.3633 0.8899 -0.5141 27 1 -0.3634 -0.8902 -0.5135 28 1 1.6872 2.1422 0.0004 29 1 4.1709 2.0662 0.0010 30 1 2.4184 -3.6205 -0.0068 31 1 3.6084 -5.7705 0.0032 32 1 5.8629 -6.8464 0.4878 33 1 10.6289 -6.7102 -2.5106 34 1 7.3571 -3.7018 0.0034 35 1 6.1726 -1.5489 0.0021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153835369.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:05 Heat of formation + Delta-G solvation = 9.686857 kcal Electronic energy + Delta-G solvation = -20310.416701 eV Core-core repulsion = 17079.219459 eV Total energy + Delta-G solvation = -3231.197242 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.01411 -40.76995 -38.75891 -35.70463 -35.25600 -34.58874 -33.58092 -31.88619 -30.54722 -29.29038 -28.28295 -25.44202 -24.31835 -23.50432 -22.53940 -21.53799 -19.50425 -18.52723 -18.23813 -17.68991 -17.50803 -16.55266 -16.12265 -16.07122 -15.63452 -15.46000 -15.01741 -14.71383 -14.51673 -14.19448 -14.03514 -13.96929 -13.44026 -13.29435 -13.13233 -12.93087 -12.79006 -12.69507 -12.14659 -12.03299 -11.79150 -11.61287 -11.24018 -10.95038 -10.28104 -10.19332 -10.02237 -9.74431 -8.70665 -8.37461 -6.95649 -0.53022 0.18513 0.53277 0.71769 1.40325 1.41500 1.57477 2.20672 2.33754 2.65368 2.77011 2.90532 3.11811 3.18504 3.55244 3.64386 4.03240 4.04618 4.15043 4.21335 4.42916 4.50645 4.58293 4.68720 4.75659 4.78249 4.92759 5.09921 5.15577 5.25080 5.31150 5.48613 5.55814 5.60076 5.75726 5.84339 6.14319 6.15322 6.34485 6.76877 7.14150 7.30960 8.33117 8.55712 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.046446 B = 0.003066 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.704960 B = 9131.072377 C = 9590.767602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.159 3.841 3 C -0.229 4.229 4 C 0.140 3.860 5 N -0.552 5.552 6 C 0.357 3.643 7 C -0.105 4.105 8 C -0.041 4.041 9 C -0.171 4.171 10 C 0.185 3.815 11 N -0.689 5.689 12 C 0.527 3.473 13 O -0.604 6.604 14 C -0.563 4.563 15 H 0.096 0.904 16 C 0.028 3.972 17 N -0.813 5.813 18 Si 1.003 2.997 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.246 1.246 22 C -0.165 4.165 23 C -0.052 4.052 24 N -0.536 5.536 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.188 0.812 29 H 0.200 0.800 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.411 0.589 33 H 0.278 0.722 34 H 0.108 0.892 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.776 11.177 5.336 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.013 3.987 3 C -0.250 4.250 4 C -0.025 4.025 5 N -0.267 5.267 6 C 0.094 3.906 7 C -0.109 4.109 8 C -0.061 4.061 9 C -0.192 4.192 10 C 0.086 3.914 11 N -0.333 5.333 12 C 0.334 3.666 13 O -0.490 6.490 14 C -0.598 4.598 15 H 0.114 0.886 16 C -0.188 4.188 17 N -0.442 5.442 18 Si 0.822 3.178 19 H -0.186 1.186 20 H -0.198 1.198 21 H -0.170 1.170 22 C -0.186 4.186 23 C -0.072 4.072 24 N -0.251 5.251 25 H 0.116 0.884 26 H 0.127 0.873 27 H 0.095 0.905 28 H 0.206 0.794 29 H 0.217 0.783 30 H 0.171 0.829 31 H 0.172 0.828 32 H 0.247 0.753 33 H 0.088 0.912 34 H 0.126 0.874 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.768 11.042 4.839 20.652 hybrid contribution 0.431 -0.048 -0.021 0.434 sum -16.336 10.994 4.818 20.272 Atomic orbital electron populations 1.20897 0.84995 1.05144 1.04748 1.22509 0.99425 0.87991 0.88784 1.23173 0.95976 1.01560 1.04283 1.23887 0.93544 0.95937 0.89101 1.68373 1.42521 0.99615 1.16176 1.21171 0.86551 0.91846 0.91054 1.18106 0.92129 0.90183 1.10432 1.21126 1.00683 0.89755 0.94526 1.21093 0.91119 0.99710 1.07264 1.18415 0.92116 0.86677 0.94181 1.43689 1.24943 1.11105 1.53522 1.18790 0.79180 0.90687 0.77952 1.90599 1.65419 1.41794 1.51189 1.21400 1.07954 0.94138 1.36325 0.88635 1.27043 0.97003 1.02638 0.92142 1.70154 1.16426 1.33196 1.24395 0.84937 0.76945 0.75760 0.80200 1.18573 1.19814 1.16957 1.21218 1.00326 0.92046 1.05024 1.21050 0.93406 0.97213 0.95520 1.68214 1.08444 1.32130 1.16361 0.88388 0.87333 0.90487 0.79427 0.78313 0.82859 0.82777 0.75308 0.91216 0.87426 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 10.22 71.24 0.73 -0.37 16 2 C 0.16 3.18 6.82 42.63 0.29 3.47 16 3 C -0.23 -3.61 9.85 22.49 0.22 -3.39 16 4 C 0.14 2.87 11.30 84.75 0.96 3.83 16 5 N -0.55 -16.89 9.44 -189.21 -1.79 -18.68 16 6 C 0.36 11.78 7.55 137.45 1.04 12.82 16 7 C -0.11 -3.85 5.88 -20.01 -0.12 -3.97 16 8 C -0.04 -1.35 9.55 22.47 0.21 -1.13 16 9 C -0.17 -5.94 9.95 22.38 0.22 -5.71 16 10 C 0.19 8.09 6.29 38.43 0.24 8.33 16 11 N -0.69 -31.69 5.30 -307.54 -1.63 -33.33 16 12 C 0.53 30.30 7.57 86.29 0.65 30.95 16 13 O -0.60 -39.89 12.43 -4.51 -0.06 -39.94 16 14 C -0.56 -31.02 9.53 24.78 0.24 -30.78 16 15 H 0.10 4.63 7.85 -2.91 -0.02 4.61 16 16 C 0.03 1.53 5.50 85.33 0.47 2.00 16 17 N -0.81 -48.88 11.82 21.85 0.26 -48.62 16 18 Si 1.00 39.81 29.56 68.60 2.03 41.84 16 19 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 20 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 21 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 22 C -0.16 -7.74 8.67 22.38 0.19 -7.54 16 23 C -0.05 -2.10 9.55 22.47 0.21 -1.89 16 24 N -0.54 -15.13 9.38 -177.36 -1.66 -16.79 16 25 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.11 0.55 8.10 -2.38 -0.02 0.53 16 27 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.19 1.19 8.06 -2.91 -0.02 1.17 16 29 H 0.20 2.48 8.06 -2.91 -0.02 2.46 16 30 H 0.15 4.30 7.50 -2.91 -0.02 4.28 16 31 H 0.15 4.30 8.06 -2.91 -0.02 4.27 16 32 H 0.41 15.60 8.80 -92.71 -0.82 14.78 16 33 H 0.28 15.11 8.29 -92.71 -0.77 14.34 16 34 H 0.11 5.88 6.21 -2.91 -0.02 5.86 16 35 H 0.13 5.11 7.50 -2.91 -0.02 5.09 16 Total: -1.00 -80.17 312.22 3.04 -77.13 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: 0.32 Total: 31.79 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 5.57 Total: 6.60 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -4.82 Total: -117.42 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -0.06 Total: -39.94 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Total: -80.17 3.04 -77.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153835369.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.817 kcal (2) G-P(sol) polarization free energy of solvation -80.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds