Wall clock time and date at job start Fri Apr 10 2020 14:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47089 * 43.02086 * 3 2 1 5 5 C 1.36919 * 119.99947 * 97.01510 * 4 3 2 6 6 H 1.07999 * 119.99785 * 157.83782 * 5 4 3 7 7 C 1.39001 * 120.00195 * 338.11475 * 5 4 3 8 8 N 1.31395 * 120.00028 * 356.94123 * 7 5 4 9 9 Si 1.86798 * 120.00332 * 176.94057 * 7 5 4 10 10 H 1.48502 * 109.47359 * 89.99663 * 9 7 5 11 11 H 1.48494 * 109.47404 * 210.00103 * 9 7 5 12 12 H 1.48506 * 109.46979 * 330.00046 * 9 7 5 13 13 C 1.34780 * 120.00334 * 277.01464 * 4 3 2 14 14 O 1.21629 * 120.00059 * 176.10923 * 13 4 3 15 15 C 1.47487 * 119.99432 * 356.10871 * 13 4 3 16 16 C 1.36674 * 125.92294 * 187.79171 * 15 13 4 17 17 N 1.36205 * 107.08322 * 179.84404 * 16 15 13 18 18 C 1.36674 * 132.28755 * 180.10936 * 17 16 15 19 19 C 1.34859 * 120.64036 * 180.33849 * 18 17 16 20 20 C 1.40571 * 120.33677 * 359.97438 * 19 18 17 21 21 C 1.50695 * 120.13078 * 179.97438 * 20 19 18 22 22 C 1.35904 * 119.73039 * 0.04893 * 20 19 18 23 23 C 1.37277 * 107.34493 * 0.41888 * 17 16 15 24 24 N 1.32250 * 108.39290 * 359.73504 * 23 17 16 25 25 H 4.40634 * 5.51315 * 180.02562 * 4 1 2 26 26 H 1.08999 * 109.47214 * 283.02199 * 3 2 1 27 27 H 1.08998 * 109.46739 * 163.01876 * 3 2 1 28 28 H 0.96996 * 120.00378 * 180.02562 * 8 7 5 29 29 H 1.08007 * 126.46434 * 359.96714 * 16 15 13 30 30 H 1.08002 * 119.68023 * 0.31852 * 18 17 16 31 31 H 1.07999 * 119.83366 * 180.02562 * 19 18 17 32 32 H 1.09002 * 109.47360 * 90.00583 * 21 20 19 33 33 H 1.09004 * 109.47518 * 210.00248 * 21 20 19 34 34 H 1.08997 * 109.47852 * 330.00333 * 21 20 19 35 35 H 1.08001 * 120.32477 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0089 -0.9423 5 6 3.4993 -0.6424 -2.2102 6 1 4.1738 -1.2649 -2.7793 7 6 3.0060 0.5338 -2.7626 8 7 2.1430 1.2632 -2.0920 9 14 3.5696 1.0776 -4.4585 10 1 2.6641 0.5068 -5.4878 11 1 3.5383 2.5601 -4.5388 12 1 4.9548 0.5982 -4.6970 13 6 3.2256 -2.2985 -0.5613 14 8 3.5637 -3.1475 -1.3641 15 6 2.9150 -2.6802 0.8290 16 6 3.1084 -3.9141 1.3841 17 7 2.6963 -3.8389 2.6801 18 6 2.6635 -4.7596 3.6896 19 6 2.1914 -4.4269 4.9083 20 6 1.7257 -3.1243 5.1579 21 6 1.1986 -2.7577 6.5213 22 6 1.7512 -2.1974 4.1644 23 6 2.2478 -2.5591 2.8933 24 7 2.3866 -1.8756 1.7696 25 1 -1.0498 -0.0001 -0.0003 26 1 3.0095 -0.2307 1.0012 27 1 3.0088 0.9837 -0.3001 28 1 1.7984 2.0838 -2.4776 29 1 3.5137 -4.7843 0.8891 30 1 3.0188 -5.7635 3.5095 31 1 2.1718 -5.1648 5.6967 32 1 2.0163 -2.3869 7.1393 33 1 0.4388 -1.9827 6.4208 34 1 0.7594 -3.6383 6.9900 35 1 1.3954 -1.1939 4.3455 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490975546.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:35 Heat of formation + Delta-G solvation = 137.083627 kcal Electronic energy + Delta-G solvation = -21444.342640 eV Core-core repulsion = 18218.669736 eV Total energy + Delta-G solvation = -3225.672903 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.49400 -38.57027 -37.21729 -35.05680 -34.03522 -31.93058 -31.02165 -30.46559 -29.78107 -26.89628 -26.30126 -24.92776 -23.41454 -22.10480 -21.46351 -19.09651 -17.75795 -17.67377 -16.55464 -16.32763 -15.97894 -15.63553 -14.96878 -14.54652 -14.30877 -14.01253 -13.89512 -13.66291 -13.52653 -12.64773 -12.57267 -12.24085 -12.17445 -12.02647 -11.60550 -11.41394 -11.22402 -11.00272 -10.54811 -10.48105 -10.33542 -9.60538 -9.27377 -9.07471 -8.64436 -8.56687 -8.35334 -7.79071 -7.55581 -6.25684 -3.87046 0.79571 1.40343 2.68802 2.76602 3.22723 3.27317 3.31531 3.58526 3.99197 4.22321 4.28707 4.40036 4.45817 4.58234 4.73281 4.82262 5.08589 5.14124 5.21130 5.30876 5.40974 5.56079 5.67594 5.77466 5.84315 5.87541 5.98723 6.18233 6.30310 6.57556 6.68967 7.05937 7.19085 7.29207 7.37814 7.54798 8.04188 8.17864 8.51133 9.13398 9.16538 9.37613 9.96023 10.68897 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.029906 B = 0.004726 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.038922 B = 5923.522754 C = 6627.413793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.069 4.069 3 C 0.218 3.782 4 N -0.413 5.413 5 C -0.303 4.303 6 H 0.105 0.895 7 C 0.031 3.969 8 N -0.863 5.863 9 Si 0.933 3.067 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.510 3.490 14 O -0.587 6.587 15 C 0.049 3.951 16 C -0.049 4.049 17 N -0.367 5.367 18 C 0.060 3.940 19 C -0.146 4.146 20 C -0.084 4.084 21 C -0.107 4.107 22 C -0.073 4.073 23 C 0.213 3.787 24 N -0.453 5.453 25 H 0.192 0.808 26 H 0.091 0.909 27 H 0.117 0.883 28 H 0.270 0.730 29 H 0.189 0.811 30 H 0.160 0.840 31 H 0.145 0.855 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.952 -6.570 16.448 17.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 C -0.070 4.070 3 C 0.096 3.904 4 N -0.128 5.128 5 C -0.431 4.431 6 H 0.122 0.878 7 C -0.174 4.174 8 N -0.501 5.501 9 Si 0.759 3.241 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.298 3.702 14 O -0.473 6.473 15 C -0.084 4.084 16 C -0.183 4.183 17 N -0.040 5.040 18 C -0.062 4.062 19 C -0.168 4.168 20 C -0.090 4.090 21 C -0.164 4.164 22 C -0.094 4.094 23 C -0.030 4.030 24 N -0.175 5.175 25 H 0.210 0.790 26 H 0.109 0.891 27 H 0.134 0.866 28 H 0.081 0.919 29 H 0.206 0.794 30 H 0.178 0.822 31 H 0.163 0.837 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.022 -5.959 15.783 16.902 hybrid contribution -0.048 -0.543 -0.756 0.932 sum -1.070 -6.502 15.028 16.409 Atomic orbital electron populations 1.24063 0.95246 1.05471 1.06981 1.22997 0.94050 0.95679 0.94283 1.18872 0.84515 0.94844 0.92173 1.43572 1.52747 1.04502 1.11968 1.19788 1.25961 1.06674 0.90714 0.87779 1.25467 0.95382 0.96722 0.99819 1.70021 1.27990 1.14810 1.37254 0.85822 0.79237 0.77486 0.81514 1.20272 1.20779 1.19295 1.16752 0.85951 0.83146 0.84379 1.90619 1.54800 1.49296 1.52535 1.21226 1.01292 0.90354 0.95558 1.22526 1.11412 1.02056 0.82286 1.42784 1.40641 1.11261 1.09316 1.21564 1.02422 0.94713 0.87500 1.20597 1.02802 0.97382 0.95974 1.19638 0.99870 0.93087 0.96434 1.20713 1.01014 1.02224 0.92411 1.20119 1.00464 1.00841 0.87943 1.21217 1.03805 0.81351 0.96671 1.71321 1.19200 1.29377 0.97639 0.79045 0.89138 0.86568 0.91903 0.79366 0.82246 0.83683 0.90912 0.91128 0.91361 0.83420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.07 19.25 29.55 0.57 -6.51 16 2 C -0.07 -1.74 10.59 -37.12 -0.39 -2.13 16 3 C 0.22 5.50 4.75 -6.83 -0.03 5.47 16 4 N -0.41 -11.34 2.60 -119.14 -0.31 -11.65 16 5 C -0.30 -8.62 9.31 -15.00 -0.14 -8.76 16 6 H 0.10 3.02 7.41 -52.49 -0.39 2.63 16 7 C 0.03 0.81 5.26 -17.46 -0.09 0.72 16 8 N -0.86 -23.28 8.83 55.50 0.49 -22.79 16 9 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 13 C 0.51 13.67 7.54 -12.49 -0.09 13.58 16 14 O -0.59 -16.98 16.60 5.25 0.09 -16.90 16 15 C 0.05 1.11 6.59 -83.46 -0.55 0.56 16 16 C -0.05 -0.91 11.48 -16.17 -0.19 -1.10 16 17 N -0.37 -5.86 2.93 -62.34 -0.18 -6.04 16 18 C 0.06 0.67 10.93 -16.59 -0.18 0.49 16 19 C -0.15 -1.38 9.67 -39.90 -0.39 -1.76 16 20 C -0.08 -0.88 5.88 -104.58 -0.62 -1.50 16 21 C -0.11 -0.75 10.02 36.00 0.36 -0.39 16 22 C -0.07 -1.00 9.75 -39.31 -0.38 -1.38 16 23 C 0.21 3.75 7.79 -156.03 -1.22 2.54 16 24 N -0.45 -9.63 7.01 -9.36 -0.07 -9.70 16 25 H 0.19 3.80 7.80 -54.10 -0.42 3.37 16 26 H 0.09 2.15 5.41 -51.93 -0.28 1.86 16 27 H 0.12 3.03 6.07 -51.93 -0.32 2.72 16 28 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.19 3.07 8.06 -52.48 -0.42 2.65 16 30 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 34 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 35 H 0.15 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 309.20 15.07 4.66 4.66 Total: -1.00 -34.17 309.20 -7.18 -41.35 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -3.50 Total: 5.34 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -3.34 Total: -0.17 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: -0.07 Total: -50.18 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: 0.09 Total: -16.90 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.17 -7.18 -41.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490975546.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.431 kcal (2) G-P(sol) polarization free energy of solvation -34.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds