Wall clock time and date at job start Fri Apr 10 2020 14:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47089 * 43.02086 * 3 2 1 5 5 C 1.36919 * 119.99947 * 97.01510 * 4 3 2 6 6 H 1.07999 * 119.99785 * 157.83782 * 5 4 3 7 7 C 1.39001 * 120.00195 * 338.11475 * 5 4 3 8 8 N 1.31395 * 120.00028 * 356.94123 * 7 5 4 9 9 Si 1.86798 * 120.00332 * 176.94057 * 7 5 4 10 10 H 1.48502 * 109.47359 * 89.99663 * 9 7 5 11 11 H 1.48494 * 109.47404 * 210.00103 * 9 7 5 12 12 H 1.48506 * 109.46979 * 330.00046 * 9 7 5 13 13 C 1.34780 * 120.00334 * 277.01464 * 4 3 2 14 14 O 1.21629 * 120.00059 * 176.10923 * 13 4 3 15 15 C 1.47487 * 119.99432 * 356.10871 * 13 4 3 16 16 C 1.36674 * 125.92294 * 187.79171 * 15 13 4 17 17 N 1.36205 * 107.08322 * 179.84404 * 16 15 13 18 18 C 1.36674 * 132.28755 * 180.10936 * 17 16 15 19 19 C 1.34859 * 120.64036 * 180.33849 * 18 17 16 20 20 C 1.40571 * 120.33677 * 359.97438 * 19 18 17 21 21 C 1.50695 * 120.13078 * 179.97438 * 20 19 18 22 22 C 1.35904 * 119.73039 * 0.04893 * 20 19 18 23 23 C 1.37277 * 107.34493 * 0.41888 * 17 16 15 24 24 N 1.32250 * 108.39290 * 359.73504 * 23 17 16 25 25 H 4.40634 * 5.51315 * 180.02562 * 4 1 2 26 26 H 1.08999 * 109.47214 * 283.02199 * 3 2 1 27 27 H 1.08998 * 109.46739 * 163.01876 * 3 2 1 28 28 H 0.96996 * 120.00378 * 180.02562 * 8 7 5 29 29 H 1.08007 * 126.46434 * 359.96714 * 16 15 13 30 30 H 1.08002 * 119.68023 * 0.31852 * 18 17 16 31 31 H 1.07999 * 119.83366 * 180.02562 * 19 18 17 32 32 H 1.09002 * 109.47360 * 90.00583 * 21 20 19 33 33 H 1.09004 * 109.47518 * 210.00248 * 21 20 19 34 34 H 1.08997 * 109.47852 * 330.00333 * 21 20 19 35 35 H 1.08001 * 120.32477 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0089 -0.9423 5 6 3.4993 -0.6424 -2.2102 6 1 4.1738 -1.2649 -2.7793 7 6 3.0060 0.5338 -2.7626 8 7 2.1430 1.2632 -2.0920 9 14 3.5696 1.0776 -4.4585 10 1 2.6641 0.5068 -5.4878 11 1 3.5383 2.5601 -4.5388 12 1 4.9548 0.5982 -4.6970 13 6 3.2256 -2.2985 -0.5613 14 8 3.5637 -3.1475 -1.3641 15 6 2.9150 -2.6802 0.8290 16 6 3.1084 -3.9141 1.3841 17 7 2.6963 -3.8389 2.6801 18 6 2.6635 -4.7596 3.6896 19 6 2.1914 -4.4269 4.9083 20 6 1.7257 -3.1243 5.1579 21 6 1.1986 -2.7577 6.5213 22 6 1.7512 -2.1974 4.1644 23 6 2.2478 -2.5591 2.8933 24 7 2.3866 -1.8756 1.7696 25 1 -1.0498 -0.0001 -0.0003 26 1 3.0095 -0.2307 1.0012 27 1 3.0088 0.9837 -0.3001 28 1 1.7984 2.0838 -2.4776 29 1 3.5137 -4.7843 0.8891 30 1 3.0188 -5.7635 3.5095 31 1 2.1718 -5.1648 5.6967 32 1 2.0163 -2.3869 7.1393 33 1 0.4388 -1.9827 6.4208 34 1 0.7594 -3.6383 6.9900 35 1 1.3954 -1.1939 4.3455 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490975546.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:34 Heat of formation + Delta-G solvation = 117.067799 kcal Electronic energy + Delta-G solvation = -21445.210591 eV Core-core repulsion = 18218.669736 eV Total energy + Delta-G solvation = -3226.540855 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.77138 -40.40935 -38.42204 -37.11068 -35.19217 -33.90458 -32.99693 -31.65753 -30.80682 -28.40266 -27.96119 -26.70934 -24.69354 -23.52341 -22.58084 -20.80336 -19.66300 -19.06394 -18.32943 -17.68926 -17.50490 -16.97578 -16.57446 -15.92518 -15.76603 -15.74554 -15.41086 -14.94085 -14.50929 -14.27220 -14.09278 -14.04965 -13.36760 -13.24363 -12.89645 -12.86905 -12.65760 -12.44871 -12.41275 -12.11427 -11.53080 -11.31967 -11.15895 -10.95728 -10.68175 -10.37881 -9.83096 -9.75389 -8.78423 -8.28353 -6.01870 -0.23321 0.26204 1.15377 1.40330 1.48265 1.53590 1.59511 2.10171 2.31930 2.41875 2.49805 2.71062 3.02071 3.15261 3.26043 3.67582 3.82913 3.90053 4.04519 4.19792 4.24435 4.42650 4.53511 4.75518 4.85329 4.92783 4.95104 5.09218 5.14709 5.25013 5.39496 5.42468 5.50593 5.53465 5.64900 5.98316 6.14465 6.41738 6.78286 7.06830 7.23544 7.34465 7.91932 8.64618 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.029906 B = 0.004726 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.038922 B = 5923.522754 C = 6627.413793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.104 4.104 3 C 0.231 3.769 4 N -0.429 5.429 5 C -0.348 4.348 6 H 0.083 0.917 7 C -0.002 4.002 8 N -0.878 5.878 9 Si 1.001 2.999 10 H -0.277 1.277 11 H -0.265 1.265 12 H -0.266 1.266 13 C 0.501 3.499 14 O -0.625 6.625 15 C 0.002 3.998 16 C -0.039 4.039 17 N -0.367 5.367 18 C 0.046 3.954 19 C -0.130 4.130 20 C -0.050 4.050 21 C -0.109 4.109 22 C -0.115 4.115 23 C 0.211 3.789 24 N -0.495 5.495 25 H 0.228 0.772 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.274 0.726 29 H 0.206 0.794 30 H 0.199 0.801 31 H 0.197 0.803 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.985 -7.943 19.699 21.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 C -0.106 4.106 3 C 0.109 3.891 4 N -0.143 5.143 5 C -0.475 4.475 6 H 0.101 0.899 7 C -0.205 4.205 8 N -0.515 5.515 9 Si 0.823 3.177 10 H -0.203 1.203 11 H -0.190 1.190 12 H -0.190 1.190 13 C 0.291 3.709 14 O -0.514 6.514 15 C -0.130 4.130 16 C -0.174 4.174 17 N -0.039 5.039 18 C -0.074 4.074 19 C -0.150 4.150 20 C -0.056 4.056 21 C -0.165 4.165 22 C -0.135 4.135 23 C -0.034 4.034 24 N -0.218 5.218 25 H 0.244 0.756 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.085 0.915 29 H 0.222 0.778 30 H 0.216 0.784 31 H 0.214 0.786 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.065 -7.324 19.080 20.542 hybrid contribution 0.181 -0.278 -1.382 1.421 sum -1.885 -7.603 17.698 19.354 Atomic orbital electron populations 1.24919 0.96232 1.03978 1.05567 1.23260 0.94652 0.97048 0.95615 1.18714 0.84951 0.93350 0.92115 1.43749 1.53254 1.05265 1.12081 1.19822 1.27800 1.07968 0.91932 0.89872 1.26281 0.94985 0.95909 1.03339 1.70141 1.28070 1.14823 1.38446 0.84832 0.78686 0.77692 0.76443 1.20328 1.18969 1.18994 1.17406 0.84667 0.82660 0.86168 1.90540 1.56313 1.50155 1.54344 1.20665 1.05305 0.92636 0.94376 1.22556 1.10476 1.00953 0.83388 1.42879 1.40155 1.11704 1.09185 1.22482 1.02438 0.95559 0.86909 1.21301 0.99761 0.97707 0.96219 1.20239 0.95817 0.92635 0.96941 1.20872 1.01709 1.03715 0.90190 1.20344 1.03393 1.02417 0.87377 1.21693 1.03037 0.81819 0.96845 1.71067 1.21265 1.30678 0.98791 0.75558 0.88254 0.88325 0.91543 0.77774 0.78434 0.78589 0.89203 0.90812 0.88648 0.83032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -13.79 19.25 74.32 1.43 -12.36 16 2 C -0.10 -5.50 10.59 31.13 0.33 -5.17 16 3 C 0.23 12.37 4.75 84.58 0.40 12.78 16 4 N -0.43 -25.20 2.60 -649.09 -1.69 -26.89 16 5 C -0.35 -21.05 9.31 84.08 0.78 -20.27 16 6 H 0.08 5.22 7.41 -2.91 -0.02 5.20 16 7 C 0.00 -0.13 5.26 84.94 0.45 0.31 16 8 N -0.88 -48.86 8.83 21.67 0.19 -48.67 16 9 Si 1.00 44.12 29.55 68.60 2.03 46.15 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 12 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 13 C 0.50 28.83 7.54 86.68 0.65 29.49 16 14 O -0.63 -38.73 16.60 -4.12 -0.07 -38.80 16 15 C 0.00 0.09 6.59 40.79 0.27 0.36 16 16 C -0.04 -1.46 11.48 83.65 0.96 -0.50 16 17 N -0.37 -11.26 2.93 -351.14 -1.03 -12.29 16 18 C 0.05 0.85 10.93 83.16 0.91 1.76 16 19 C -0.13 -1.70 9.67 22.06 0.21 -1.49 16 20 C -0.05 -0.83 5.88 -19.84 -0.12 -0.94 16 21 C -0.11 -0.93 10.02 71.23 0.71 -0.22 16 22 C -0.12 -2.94 9.75 22.45 0.22 -2.72 16 23 C 0.21 7.42 7.79 134.19 1.05 8.46 16 24 N -0.50 -22.00 7.01 -183.51 -1.29 -23.28 16 25 H 0.23 8.69 7.80 -4.43 -0.03 8.66 16 26 H 0.10 5.07 5.41 -2.39 -0.01 5.06 16 27 H 0.10 5.51 6.07 -2.39 -0.01 5.49 16 28 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.21 6.76 8.06 -2.91 -0.02 6.73 16 30 H 0.20 2.06 8.06 -2.91 -0.02 2.03 16 31 H 0.20 0.70 8.06 -2.91 -0.02 0.68 16 32 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.67 8.08 -2.38 -0.02 0.65 16 34 H 0.09 0.40 8.10 -2.39 -0.02 0.38 16 35 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -81.68 309.20 7.52 -74.17 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 1.12 Total: 20.13 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 8.26 Total: 9.48 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -3.81 Total: -111.13 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -0.07 Total: -38.80 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -81.68 7.52 -74.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490975546.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.233 kcal (2) G-P(sol) polarization free energy of solvation -81.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds