Wall clock time and date at job start Fri Apr 10 2020 15:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38202 * 120.40578 * 2 1 4 4 C 1.39521 * 118.33357 * 180.02562 * 3 2 1 5 5 N 1.38957 * 120.52565 * 179.97438 * 4 3 2 6 6 C 1.34775 * 119.99880 * 174.70426 * 5 4 3 7 7 O 1.21534 * 120.00299 * 354.84369 * 6 5 4 8 8 C 1.47843 * 119.99830 * 174.57316 * 6 5 4 9 9 C 1.39944 * 120.02673 * 359.97438 * 8 6 5 10 10 C 1.38323 * 120.35297 * 179.69389 * 9 8 6 11 11 C 1.37752 * 120.41462 * 0.61273 * 10 9 8 12 12 C 1.40746 * 120.04465 * 359.66974 * 11 10 9 13 13 C 1.41442 * 120.17949 * 180.02562 * 12 11 10 14 14 H 1.08007 * 119.99855 * 27.39974 * 13 12 11 15 15 C 1.39933 * 120.00412 * 207.40850 * 13 12 11 16 16 N 1.30833 * 119.99779 * 10.70323 * 15 13 12 17 17 Si 1.86798 * 120.00383 * 190.70640 * 15 13 12 18 18 H 1.48502 * 109.47035 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47267 * 119.99794 * 17 15 13 20 20 H 1.48505 * 109.47142 * 239.99843 * 17 15 13 21 21 C 1.39016 * 120.02649 * 180.27474 * 8 6 5 22 22 N 1.32931 * 118.94894 * 0.25209 * 4 3 2 23 23 C 1.31747 * 120.70420 * 359.48859 * 22 4 3 24 24 N 1.31793 * 121.82537 * 0.52817 * 23 22 4 25 25 H 1.09004 * 109.46800 * 89.99898 * 1 2 3 26 26 H 1.08991 * 109.47454 * 209.99743 * 1 2 3 27 27 H 1.09005 * 109.46751 * 330.00477 * 1 2 3 28 28 H 1.08001 * 120.83621 * 0.04059 * 3 2 1 29 29 H 0.97006 * 119.99881 * 354.70100 * 5 4 3 30 30 H 1.07997 * 119.81926 * 0.02562 * 9 8 6 31 31 H 1.08000 * 119.79107 * 180.30666 * 10 9 8 32 32 H 1.08007 * 119.97775 * 179.69939 * 11 10 9 33 33 H 0.97005 * 119.99854 * 179.97438 * 16 15 13 34 34 H 1.07996 * 120.20566 * 359.97438 * 21 8 6 35 35 H 1.08000 * 119.08585 * 180.26743 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2065 1.1919 0.0000 4 6 3.6008 1.1415 -0.0005 5 7 4.3494 2.3122 -0.0011 6 6 5.6917 2.2538 0.1061 7 8 6.2402 1.1862 0.2972 8 6 6.4972 3.4875 -0.0148 9 6 5.8667 4.7162 -0.2411 10 6 6.6133 5.8756 -0.3490 11 6 7.9864 5.8328 -0.2477 12 6 8.6387 4.6055 -0.0260 13 6 10.0485 4.5583 0.0791 14 1 10.5931 5.4229 0.4289 15 6 10.7375 3.3916 -0.2703 16 7 10.1119 2.4224 -0.8876 17 14 12.5505 3.2178 0.1447 18 1 13.0196 4.4447 0.8374 19 1 12.7448 2.0429 1.0319 20 1 13.3286 3.0277 -1.1058 21 6 7.8821 3.4271 0.0900 22 7 4.2018 -0.0442 -0.0062 23 6 3.4955 -1.1564 -0.0010 24 7 2.1776 -1.1428 -0.0006 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5137 27 1 -0.3633 0.8901 0.5138 28 1 1.6869 2.1387 0.0007 29 1 3.9060 3.1714 -0.0787 30 1 4.7910 4.7601 -0.3266 31 1 6.1169 6.8196 -0.5188 32 1 8.5628 6.7417 -0.3379 33 1 10.5897 1.6138 -1.1301 34 1 8.3734 2.4805 0.2602 35 1 4.0108 -2.1055 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000525645956.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:39 Heat of formation + Delta-G solvation = 38.744538 kcal Electronic energy + Delta-G solvation = -20659.231897 eV Core-core repulsion = 17429.294691 eV Total energy + Delta-G solvation = -3229.937206 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.12695 -39.26042 -37.19162 -35.14754 -33.96380 -33.69715 -31.51856 -30.02085 -29.51427 -28.45126 -25.46725 -24.27487 -23.82859 -21.69649 -21.00356 -19.90686 -18.24102 -17.61959 -16.86746 -15.81602 -15.45636 -15.34020 -15.22310 -14.90812 -14.69393 -14.23033 -13.95156 -13.30057 -13.05634 -13.03971 -12.81080 -12.62284 -12.52516 -11.75738 -11.33953 -11.16600 -11.10549 -10.79633 -10.71426 -10.54618 -10.14339 -9.81715 -9.80183 -9.55547 -9.33747 -8.72707 -8.60994 -7.75537 -7.58289 -6.80648 -4.50748 0.99263 1.19049 2.12116 2.73780 3.01111 3.05604 3.08279 3.10491 3.63839 3.88425 4.03066 4.09322 4.29106 4.58660 4.70276 5.00055 5.08246 5.33760 5.41694 5.44962 5.49964 5.66449 5.76347 5.93661 6.13356 6.21782 6.58445 6.70529 6.87009 6.90976 7.00025 7.14806 7.27206 7.53534 7.59820 7.75434 7.89308 8.08368 8.32357 8.42375 8.68194 8.74090 8.75953 10.12238 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.025999 B = 0.003916 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.699851 B = 7148.921893 C = 8153.270136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.191 3.809 3 C -0.275 4.275 4 C 0.419 3.581 5 N -0.657 5.657 6 C 0.553 3.447 7 O -0.469 6.469 8 C -0.132 4.132 9 C -0.218 4.218 10 C -0.097 4.097 11 C -0.207 4.207 12 C 0.097 3.903 13 C -0.457 4.457 14 H 0.082 0.918 15 C 0.069 3.931 16 N -0.789 5.789 17 Si 0.915 3.085 18 H -0.260 1.260 19 H -0.271 1.271 20 H -0.273 1.273 21 C -0.083 4.083 22 N -0.517 5.517 23 C 0.328 3.672 24 N -0.555 5.555 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.144 0.856 29 H 0.419 0.581 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.285 0.715 34 H 0.140 0.860 35 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.778 -1.327 0.881 13.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.046 3.954 3 C -0.301 4.301 4 C 0.178 3.822 5 N -0.304 5.304 6 C 0.343 3.657 7 O -0.338 6.338 8 C -0.135 4.135 9 C -0.238 4.238 10 C -0.115 4.115 11 C -0.226 4.226 12 C 0.095 3.905 13 C -0.486 4.486 14 H 0.100 0.900 15 C -0.149 4.149 16 N -0.414 5.414 17 Si 0.739 3.261 18 H -0.184 1.184 19 H -0.196 1.196 20 H -0.199 1.199 21 C -0.103 4.103 22 N -0.239 5.239 23 C 0.039 3.961 24 N -0.274 5.274 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.162 0.838 29 H 0.258 0.742 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.158 0.842 35 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -12.713 -3.093 0.898 13.115 hybrid contribution 0.162 1.187 -0.058 1.199 sum -12.552 -1.906 0.840 12.723 Atomic orbital electron populations 1.20738 0.88024 1.03799 1.03464 1.21391 0.97254 0.87673 0.89050 1.22053 0.93281 1.01175 1.13616 1.18812 0.87948 0.87345 0.88084 1.43901 1.08196 1.06785 1.71488 1.19193 0.80263 0.90513 0.75711 1.90820 1.70007 1.30416 1.42524 1.19388 0.94460 0.90581 1.09096 1.20335 0.96708 0.92461 1.14322 1.20433 0.94251 0.96087 1.00774 1.21171 0.93594 0.97880 1.10000 1.17629 0.93619 0.90525 0.88775 1.19647 0.91469 0.98836 1.38619 0.89993 1.25984 1.01355 0.94890 0.92675 1.69750 1.38455 1.05852 1.27314 0.86150 0.81377 0.79463 0.79117 1.18398 1.19573 1.19862 1.21775 0.89914 1.00551 0.98034 1.68517 1.40439 0.97359 1.17553 1.24929 0.86185 0.96432 0.88565 1.68256 1.10438 1.29960 1.18776 0.89864 0.90032 0.90336 0.83811 0.74243 0.89286 0.88674 0.88399 0.90415 0.84215 0.78657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.22 36.01 0.37 -0.43 16 2 C 0.19 2.32 6.82 -82.31 -0.56 1.75 16 3 C -0.27 -3.45 9.72 -39.12 -0.38 -3.83 16 4 C 0.42 6.94 7.44 -154.47 -1.15 5.79 16 5 N -0.66 -11.13 5.32 -12.15 -0.06 -11.20 16 6 C 0.55 12.06 7.72 -12.33 -0.10 11.96 16 7 O -0.47 -11.81 14.67 5.34 0.08 -11.73 16 8 C -0.13 -3.02 5.87 -105.04 -0.62 -3.64 16 9 C -0.22 -4.36 9.55 -38.91 -0.37 -4.73 16 10 C -0.10 -1.98 10.01 -39.73 -0.40 -2.37 16 11 C -0.21 -4.73 9.78 -38.81 -0.38 -5.11 16 12 C 0.10 2.50 5.57 -106.87 -0.59 1.91 16 13 C -0.46 -11.74 9.07 -37.73 -0.34 -12.08 16 14 H 0.08 2.00 7.87 -52.48 -0.41 1.59 16 15 C 0.07 1.72 5.26 -17.34 -0.09 1.63 16 16 N -0.79 -20.67 10.74 55.55 0.60 -20.07 16 17 Si 0.91 18.58 29.57 -169.99 -5.03 13.55 16 18 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 21 C -0.08 -2.15 8.21 -38.44 -0.32 -2.47 16 22 N -0.52 -9.59 8.09 -13.75 -0.11 -9.70 16 23 C 0.33 4.99 12.28 -92.20 -1.13 3.86 16 24 N -0.56 -7.79 10.37 -10.87 -0.11 -7.91 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 28 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.42 5.58 6.76 -40.82 -0.28 5.30 16 30 H 0.09 1.41 6.39 -52.49 -0.34 1.07 16 31 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 32 H 0.10 2.08 8.06 -52.48 -0.42 1.65 16 33 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 34 H 0.14 3.96 5.69 -52.49 -0.30 3.67 16 35 H 0.20 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 309.21 15.07 4.66 4.66 Total: -1.00 -31.41 309.21 -9.45 -40.86 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -3.41 Total: 9.28 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -6.06 Total: -7.74 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.31 Total: -48.88 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.41 -9.45 -40.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525645956.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.604 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds