Wall clock time and date at job start Fri Apr 10 2020 15:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38202 * 120.40578 * 2 1 4 4 C 1.39521 * 118.33357 * 180.02562 * 3 2 1 5 5 N 1.38957 * 120.52565 * 179.97438 * 4 3 2 6 6 C 1.34775 * 119.99880 * 174.70426 * 5 4 3 7 7 O 1.21534 * 120.00299 * 354.84369 * 6 5 4 8 8 C 1.47843 * 119.99830 * 174.57316 * 6 5 4 9 9 C 1.39944 * 120.02673 * 359.97438 * 8 6 5 10 10 C 1.38323 * 120.35297 * 179.69389 * 9 8 6 11 11 C 1.37752 * 120.41462 * 0.61273 * 10 9 8 12 12 C 1.40746 * 120.04465 * 359.66974 * 11 10 9 13 13 C 1.41442 * 120.17949 * 180.02562 * 12 11 10 14 14 H 1.08007 * 119.99855 * 27.39974 * 13 12 11 15 15 C 1.39933 * 120.00412 * 207.40850 * 13 12 11 16 16 N 1.30833 * 119.99779 * 10.70323 * 15 13 12 17 17 Si 1.86798 * 120.00383 * 190.70640 * 15 13 12 18 18 H 1.48502 * 109.47035 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47267 * 119.99794 * 17 15 13 20 20 H 1.48505 * 109.47142 * 239.99843 * 17 15 13 21 21 C 1.39016 * 120.02649 * 180.27474 * 8 6 5 22 22 N 1.32931 * 118.94894 * 0.25209 * 4 3 2 23 23 C 1.31747 * 120.70420 * 359.48859 * 22 4 3 24 24 N 1.31793 * 121.82537 * 0.52817 * 23 22 4 25 25 H 1.09004 * 109.46800 * 89.99898 * 1 2 3 26 26 H 1.08991 * 109.47454 * 209.99743 * 1 2 3 27 27 H 1.09005 * 109.46751 * 330.00477 * 1 2 3 28 28 H 1.08001 * 120.83621 * 0.04059 * 3 2 1 29 29 H 0.97006 * 119.99881 * 354.70100 * 5 4 3 30 30 H 1.07997 * 119.81926 * 0.02562 * 9 8 6 31 31 H 1.08000 * 119.79107 * 180.30666 * 10 9 8 32 32 H 1.08007 * 119.97775 * 179.69939 * 11 10 9 33 33 H 0.97005 * 119.99854 * 179.97438 * 16 15 13 34 34 H 1.07996 * 120.20566 * 359.97438 * 21 8 6 35 35 H 1.08000 * 119.08585 * 180.26743 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2065 1.1919 0.0000 4 6 3.6008 1.1415 -0.0005 5 7 4.3494 2.3122 -0.0011 6 6 5.6917 2.2538 0.1061 7 8 6.2402 1.1862 0.2972 8 6 6.4972 3.4875 -0.0148 9 6 5.8667 4.7162 -0.2411 10 6 6.6133 5.8756 -0.3490 11 6 7.9864 5.8328 -0.2477 12 6 8.6387 4.6055 -0.0260 13 6 10.0485 4.5583 0.0791 14 1 10.5931 5.4229 0.4289 15 6 10.7375 3.3916 -0.2703 16 7 10.1119 2.4224 -0.8876 17 14 12.5505 3.2178 0.1447 18 1 13.0196 4.4447 0.8374 19 1 12.7448 2.0429 1.0319 20 1 13.3286 3.0277 -1.1058 21 6 7.8821 3.4271 0.0900 22 7 4.2018 -0.0442 -0.0062 23 6 3.4955 -1.1564 -0.0010 24 7 2.1776 -1.1428 -0.0006 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5137 27 1 -0.3633 0.8901 0.5138 28 1 1.6869 2.1387 0.0007 29 1 3.9060 3.1714 -0.0787 30 1 4.7910 4.7601 -0.3266 31 1 6.1169 6.8196 -0.5188 32 1 8.5628 6.7417 -0.3379 33 1 10.5897 1.6138 -1.1301 34 1 8.3734 2.4805 0.2602 35 1 4.0108 -2.1055 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525645956.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:38 Heat of formation + Delta-G solvation = 20.124977 kcal Electronic energy + Delta-G solvation = -20660.039302 eV Core-core repulsion = 17429.294691 eV Total energy + Delta-G solvation = -3230.744611 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.33146 -40.79914 -38.91136 -36.59002 -35.61166 -34.93243 -32.87272 -31.63282 -31.27252 -29.33865 -27.28596 -25.55222 -25.14973 -23.11050 -22.71497 -21.43657 -19.82109 -19.01029 -18.31974 -17.37549 -16.88773 -16.62731 -16.45770 -16.40740 -16.14192 -15.57723 -15.49532 -15.05417 -14.54498 -14.32927 -13.95775 -13.90786 -13.50740 -13.11567 -12.97287 -12.81948 -12.62027 -12.42743 -12.20180 -11.98412 -11.74444 -11.54019 -11.15464 -11.13200 -10.90936 -10.03361 -9.89029 -9.51517 -9.38636 -8.62716 -6.42697 -0.18914 0.06737 0.46409 0.98632 1.36264 1.45090 1.52072 1.68951 2.02077 2.18746 2.73912 2.88695 3.15419 3.16492 3.60538 3.65838 3.91901 4.12729 4.26492 4.38818 4.53816 4.55903 4.80770 4.83698 4.87915 4.97181 5.05735 5.14119 5.23820 5.30560 5.47677 5.57353 5.72765 5.84264 5.91516 6.04774 6.25730 6.39548 6.58563 6.86610 6.91713 7.03535 7.28189 8.31895 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.025999 B = 0.003916 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.699851 B = 7148.921893 C = 8153.270136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.185 3.815 3 C -0.252 4.252 4 C 0.385 3.615 5 N -0.640 5.640 6 C 0.554 3.446 7 O -0.517 6.517 8 C -0.142 4.142 9 C -0.192 4.192 10 C -0.096 4.096 11 C -0.209 4.209 12 C 0.064 3.936 13 C -0.494 4.494 14 H 0.085 0.915 15 C 0.024 3.976 16 N -0.833 5.833 17 Si 0.986 3.014 18 H -0.250 1.250 19 H -0.272 1.272 20 H -0.266 1.266 21 C -0.122 4.122 22 N -0.568 5.568 23 C 0.316 3.684 24 N -0.558 5.558 25 H 0.100 0.900 26 H 0.083 0.917 27 H 0.106 0.894 28 H 0.189 0.811 29 H 0.436 0.564 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.111 0.889 33 H 0.284 0.716 34 H 0.102 0.898 35 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.225 0.577 0.762 17.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.040 3.960 3 C -0.278 4.278 4 C 0.147 3.853 5 N -0.289 5.289 6 C 0.344 3.656 7 O -0.390 6.390 8 C -0.146 4.146 9 C -0.211 4.211 10 C -0.114 4.114 11 C -0.229 4.229 12 C 0.062 3.938 13 C -0.524 4.524 14 H 0.103 0.897 15 C -0.189 4.189 16 N -0.460 5.460 17 Si 0.807 3.193 18 H -0.174 1.174 19 H -0.197 1.197 20 H -0.191 1.191 21 C -0.143 4.143 22 N -0.290 5.290 23 C 0.027 3.973 24 N -0.276 5.276 25 H 0.119 0.881 26 H 0.102 0.898 27 H 0.125 0.875 28 H 0.206 0.794 29 H 0.279 0.721 30 H 0.160 0.840 31 H 0.162 0.838 32 H 0.129 0.871 33 H 0.095 0.905 34 H 0.120 0.880 35 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -16.234 -1.159 0.774 16.294 hybrid contribution 0.882 0.632 -0.030 1.085 sum -15.352 -0.527 0.744 15.379 Atomic orbital electron populations 1.20896 0.84328 1.05368 1.04957 1.22259 0.99453 0.86920 0.87333 1.22450 0.91180 1.03305 1.10825 1.19149 0.89505 0.86576 0.90108 1.43446 1.06374 1.08119 1.70925 1.19091 0.81875 0.89428 0.75228 1.90795 1.71470 1.31816 1.44898 1.19657 0.93701 0.92583 1.08623 1.20923 0.99400 0.90762 1.10027 1.20955 0.93211 0.98237 0.98950 1.21504 0.95334 0.97171 1.08843 1.17963 0.94175 0.91676 0.89987 1.19909 0.92179 0.99709 1.40600 0.89731 1.26864 1.05785 0.94236 0.92017 1.69879 1.40195 1.06548 1.29334 0.85095 0.75849 0.79434 0.78960 1.17351 1.19688 1.19057 1.21550 0.91687 0.99476 1.01564 1.68395 1.42634 0.98964 1.19002 1.25226 0.86883 0.96309 0.88877 1.68362 1.09747 1.31187 1.18344 0.88139 0.89794 0.87499 0.79424 0.72131 0.83960 0.83827 0.87065 0.90509 0.87976 0.77292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 10.22 71.24 0.73 -0.34 16 2 C 0.18 3.89 6.82 42.45 0.29 4.18 16 3 C -0.25 -5.42 9.72 22.57 0.22 -5.20 16 4 C 0.39 12.29 7.44 133.01 0.99 13.28 16 5 N -0.64 -20.68 5.32 -310.63 -1.65 -22.33 16 6 C 0.55 24.58 7.72 86.79 0.67 25.25 16 7 O -0.52 -27.64 14.67 -3.82 -0.06 -27.69 16 8 C -0.14 -6.56 5.87 -20.14 -0.12 -6.68 16 9 C -0.19 -7.03 9.55 22.70 0.22 -6.81 16 10 C -0.10 -3.55 10.01 22.17 0.22 -3.33 16 11 C -0.21 -9.39 9.78 22.77 0.22 -9.17 16 12 C 0.06 3.43 5.57 -21.32 -0.12 3.31 16 13 C -0.49 -26.69 9.07 23.47 0.21 -26.48 16 14 H 0.08 4.30 7.87 -2.91 -0.02 4.28 16 15 C 0.02 1.28 5.26 85.25 0.45 1.73 16 16 N -0.83 -46.92 10.74 21.82 0.23 -46.69 16 17 Si 0.99 39.93 29.57 68.60 2.03 41.96 16 18 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 19 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 20 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 21 C -0.12 -6.72 8.21 23.01 0.19 -6.53 16 22 N -0.57 -21.45 8.09 -197.41 -1.60 -23.04 16 23 C 0.32 9.67 12.28 180.90 2.22 11.89 16 24 N -0.56 -14.82 10.37 -188.30 -1.95 -16.77 16 25 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.11 0.61 8.09 -2.38 -0.02 0.59 16 28 H 0.19 2.25 8.06 -2.91 -0.02 2.22 16 29 H 0.44 9.97 6.76 -92.70 -0.63 9.34 16 30 H 0.14 3.65 6.39 -2.91 -0.02 3.64 16 31 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 32 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 33 H 0.28 14.85 8.30 -92.70 -0.77 14.08 16 34 H 0.10 6.34 5.69 -2.91 -0.02 6.33 16 35 H 0.21 5.32 8.06 -2.91 -0.02 5.29 16 Total: -1.00 -76.00 309.21 3.91 -72.08 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.52 Total: 27.38 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: 6.39 Total: -4.89 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -4.97 Total: -108.83 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.06 Total: -27.69 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Total: -76.00 3.91 -72.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525645956.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.209 kcal (2) G-P(sol) polarization free energy of solvation -75.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds