Wall clock time and date at job start Fri Apr 10 2020 14:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38401 * 120.85823 * 2 1 4 4 C 1.38308 * 119.30750 * 180.02562 * 3 2 1 5 5 N 1.31961 * 121.08875 * 359.97438 * 4 3 2 6 6 C 1.31670 * 121.87821 * 359.70444 * 5 4 3 7 7 C 1.39581 * 120.56092 * 0.58609 * 6 5 4 8 8 C 1.47795 * 120.55892 * 179.70178 * 7 6 5 9 9 O 1.21555 * 119.99883 * 182.46759 * 8 7 6 10 10 N 1.34769 * 120.00427 * 2.46693 * 8 7 6 11 11 C 1.39381 * 120.00576 * 174.74520 * 10 8 7 12 12 C 1.38627 * 119.58501 * 174.26857 * 11 10 8 13 13 C 1.40803 * 118.79399 * 179.97438 * 12 11 10 14 14 C 1.41534 * 120.99616 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00569 * 211.49923 * 14 13 12 16 16 C 1.40031 * 120.00127 * 31.50197 * 14 13 12 17 17 N 1.30746 * 119.99527 * 6.82621 * 16 14 13 18 18 Si 1.86800 * 120.00358 * 186.83107 * 16 14 13 19 19 H 1.48502 * 109.47041 * 59.99992 * 18 16 14 20 20 H 1.48497 * 109.47034 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47131 * 299.99597 * 18 16 14 22 22 C 1.41185 * 118.00628 * 0.02562 * 13 12 11 23 23 C 1.37583 * 119.02253 * 0.02562 * 22 13 12 24 24 N 1.32079 * 121.11299 * 359.97438 * 23 22 13 25 25 H 1.09002 * 109.47067 * 262.60939 * 1 2 3 26 26 H 1.08995 * 109.47205 * 22.60670 * 1 2 3 27 27 H 1.09001 * 109.47201 * 142.61024 * 1 2 3 28 28 H 1.08000 * 120.34301 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.45760 * 179.97438 * 4 3 2 30 30 H 1.07994 * 119.71507 * 180.30913 * 6 5 4 31 31 H 0.97004 * 120.00216 * 354.74703 * 10 8 7 32 32 H 1.07998 * 120.60199 * 0.02819 * 12 11 10 33 33 H 0.97005 * 119.99577 * 180.02562 * 17 16 14 34 34 H 1.08005 * 120.48392 * 179.97438 * 22 13 12 35 35 H 1.08005 * 119.44527 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1507 -0.0005 5 7 4.2500 0.0026 -0.0005 6 6 3.6200 -1.1536 0.0057 7 6 2.2251 -1.2019 0.0004 8 6 1.5180 -2.4997 0.0008 9 8 0.3039 -2.5304 -0.0492 10 7 2.2193 -3.6492 0.0566 11 6 1.5523 -4.8680 0.1675 12 6 2.2727 -6.0507 0.1042 13 6 1.5821 -7.2724 0.2187 14 6 2.2710 -8.5074 0.1600 15 1 1.7834 -9.3788 -0.2516 16 6 3.5848 -8.5996 0.6356 17 7 4.1288 -7.5842 1.2543 18 14 4.5603 -10.1730 0.3862 19 1 4.6844 -10.4534 -1.0668 20 1 5.9137 -10.0151 0.9766 21 1 3.8587 -11.3009 1.0499 22 6 0.1817 -7.2286 0.3927 23 6 -0.4468 -6.0057 0.4425 24 7 0.2376 -4.8816 0.3311 25 1 -0.3633 -0.1322 1.0191 26 1 -0.3633 0.9487 -0.3950 27 1 -0.3634 -0.8165 -0.6240 28 1 1.6966 2.1345 -0.0004 29 1 4.1558 2.0763 -0.0010 30 1 4.1875 -2.0724 0.0105 31 1 3.1885 -3.6284 0.0196 32 1 3.3442 -6.0353 -0.0296 33 1 5.0390 -7.6479 1.5834 34 1 -0.3879 -8.1416 0.4846 35 1 -1.5179 -5.9642 0.5750 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531925770.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:52 Heat of formation + Delta-G solvation = 39.364380 kcal Electronic energy + Delta-G solvation = -20905.268270 eV Core-core repulsion = 17675.357942 eV Total energy + Delta-G solvation = -3229.910328 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.69879 -39.20166 -37.72109 -34.67935 -33.93642 -33.50427 -31.60365 -30.55133 -28.81296 -27.66009 -26.01517 -24.51878 -22.59636 -22.07368 -21.37902 -19.96804 -17.77864 -17.66121 -16.56096 -16.34582 -15.57388 -15.23291 -15.00542 -14.81695 -14.25893 -14.08131 -13.78737 -13.62718 -12.95867 -12.83191 -12.70673 -12.62314 -12.42172 -12.32110 -11.93010 -11.45783 -11.23522 -10.94481 -10.33398 -10.20590 -9.91700 -9.79520 -9.56704 -9.41202 -9.26818 -9.17425 -7.99509 -7.80514 -7.11062 -6.77628 -4.66097 0.63823 1.11439 2.54404 2.78314 3.01136 3.03755 3.15238 3.33547 3.46504 3.85325 3.91919 4.22620 4.60194 4.64944 4.67442 4.82127 4.97136 5.30539 5.45180 5.53591 5.59702 5.77873 5.78808 5.90283 6.09397 6.35978 6.50013 6.56938 6.58631 6.73962 6.90349 7.08286 7.30509 7.39303 7.69831 7.77141 7.88058 8.13362 8.36266 8.64037 8.71906 8.76580 9.58399 10.10953 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.023530 B = 0.004222 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.685713 B = 6630.108678 C = 7750.166463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.017 3.983 3 C -0.186 4.186 4 C 0.116 3.884 5 N -0.494 5.494 6 C 0.136 3.864 7 C -0.184 4.184 8 C 0.548 3.452 9 O -0.470 6.470 10 N -0.651 5.651 11 C 0.334 3.666 12 C -0.230 4.230 13 C 0.146 3.854 14 C -0.460 4.460 15 H 0.081 0.919 16 C 0.076 3.924 17 N -0.800 5.800 18 Si 0.916 3.084 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.277 4.277 23 C 0.117 3.883 24 N -0.550 5.550 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.107 0.893 28 H 0.139 0.861 29 H 0.158 0.842 30 H 0.160 0.840 31 H 0.407 0.593 32 H 0.129 0.871 33 H 0.282 0.718 34 H 0.104 0.896 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.969 12.219 -1.766 12.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.009 3.991 3 C -0.206 4.206 4 C -0.040 4.040 5 N -0.203 5.203 6 C -0.023 4.023 7 C -0.190 4.190 8 C 0.333 3.667 9 O -0.342 6.342 10 N -0.297 5.297 11 C 0.109 3.891 12 C -0.255 4.255 13 C 0.137 3.863 14 C -0.492 4.492 15 H 0.099 0.901 16 C -0.142 4.142 17 N -0.427 5.427 18 Si 0.740 3.260 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.189 1.189 22 C -0.301 4.301 23 C -0.038 4.038 24 N -0.269 5.269 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.126 0.874 28 H 0.157 0.843 29 H 0.175 0.825 30 H 0.177 0.823 31 H 0.243 0.757 32 H 0.146 0.854 33 H 0.093 0.907 34 H 0.122 0.878 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.764 13.155 -1.638 13.279 hybrid contribution 0.735 -1.485 0.052 1.658 sum 1.499 11.670 -1.586 11.872 Atomic orbital electron populations 1.21175 0.89059 1.03713 1.04444 1.20523 0.97665 0.91249 0.89669 1.22053 0.95546 0.98588 1.04443 1.22920 0.91766 0.96382 0.92926 1.67692 1.40860 0.98283 1.13419 1.23038 0.90589 0.96591 0.92040 1.21079 0.95202 0.94816 1.07879 1.18064 0.87476 0.83005 0.78175 1.90776 1.12517 1.86040 1.44881 1.43325 1.09916 1.04572 1.71902 1.18142 0.89644 0.83591 0.97689 1.21608 1.00811 0.90240 1.12868 1.17576 0.90559 0.92797 0.85337 1.19518 0.97204 0.95922 1.36552 0.90065 1.25912 0.97533 0.98178 0.92530 1.69719 1.14805 1.31171 1.26981 0.86244 0.78472 0.81528 0.79763 1.18812 1.20262 1.18936 1.22000 0.96174 0.97354 1.14540 1.21768 0.97876 0.87684 0.96436 1.67167 1.06138 1.30502 1.23135 0.90080 0.92066 0.87446 0.84301 0.82465 0.82331 0.75685 0.85352 0.90721 0.87810 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 8.95 36.00 0.32 -1.31 16 2 C 0.02 0.23 5.95 -103.90 -0.62 -0.39 16 3 C -0.19 -1.95 9.78 -39.50 -0.39 -2.34 16 4 C 0.12 1.24 11.17 -17.47 -0.20 1.04 16 5 N -0.49 -6.49 10.35 -12.90 -0.13 -6.62 16 6 C 0.14 1.85 10.71 -17.12 -0.18 1.66 16 7 C -0.18 -2.79 5.89 -104.83 -0.62 -3.40 16 8 C 0.55 10.30 7.71 -12.36 -0.10 10.20 16 9 O -0.47 -10.15 11.70 5.32 0.06 -10.09 16 10 N -0.65 -12.64 5.34 -12.37 -0.07 -12.70 16 11 C 0.33 7.92 7.40 -154.76 -1.15 6.78 16 12 C -0.23 -5.72 8.57 -38.47 -0.33 -6.05 16 13 C 0.15 3.76 5.55 -106.55 -0.59 3.17 16 14 C -0.46 -11.68 9.12 -37.65 -0.34 -12.03 16 15 H 0.08 1.97 7.86 -52.48 -0.41 1.56 16 16 C 0.08 1.82 5.33 -17.34 -0.09 1.73 16 17 N -0.80 -19.59 10.90 55.55 0.61 -18.99 16 18 Si 0.92 17.90 29.57 -169.99 -5.03 12.87 16 19 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 20 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 21 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 22 C -0.28 -6.66 9.90 -38.70 -0.38 -7.04 16 23 C 0.12 2.73 11.15 -17.68 -0.20 2.53 16 24 N -0.55 -13.64 7.89 -12.53 -0.10 -13.74 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.06 0.60 8.06 -51.93 -0.42 0.18 16 27 H 0.11 1.66 5.78 -51.93 -0.30 1.36 16 28 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.16 1.86 6.43 -52.49 -0.34 1.53 16 31 H 0.41 6.55 6.77 -40.82 -0.28 6.28 16 32 H 0.13 3.17 6.40 -52.49 -0.34 2.84 16 33 H 0.28 6.30 8.29 -40.82 -0.34 5.96 16 34 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 35 H 0.13 2.52 8.06 -52.48 -0.42 2.10 16 LS Contribution 304.20 15.07 4.58 4.58 Total: -1.00 -30.61 304.20 -8.26 -38.86 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -3.33 Total: 11.25 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -4.86 Total: -5.43 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.31 Total: -52.05 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.06 Total: -10.09 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.61 -8.26 -38.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531925770.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.229 kcal (2) G-P(sol) polarization free energy of solvation -30.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds