Wall clock time and date at job start Fri Apr 10 2020 14:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38401 * 120.85823 * 2 1 4 4 C 1.38308 * 119.30750 * 180.02562 * 3 2 1 5 5 N 1.31961 * 121.08875 * 359.97438 * 4 3 2 6 6 C 1.31670 * 121.87821 * 359.70444 * 5 4 3 7 7 C 1.39581 * 120.56092 * 0.58609 * 6 5 4 8 8 C 1.47795 * 120.55892 * 179.70178 * 7 6 5 9 9 O 1.21555 * 119.99883 * 182.46759 * 8 7 6 10 10 N 1.34769 * 120.00427 * 2.46693 * 8 7 6 11 11 C 1.39381 * 120.00576 * 174.74520 * 10 8 7 12 12 C 1.38627 * 119.58501 * 174.26857 * 11 10 8 13 13 C 1.40803 * 118.79399 * 179.97438 * 12 11 10 14 14 C 1.41534 * 120.99616 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00569 * 211.49923 * 14 13 12 16 16 C 1.40031 * 120.00127 * 31.50197 * 14 13 12 17 17 N 1.30746 * 119.99527 * 6.82621 * 16 14 13 18 18 Si 1.86800 * 120.00358 * 186.83107 * 16 14 13 19 19 H 1.48502 * 109.47041 * 59.99992 * 18 16 14 20 20 H 1.48497 * 109.47034 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47131 * 299.99597 * 18 16 14 22 22 C 1.41185 * 118.00628 * 0.02562 * 13 12 11 23 23 C 1.37583 * 119.02253 * 0.02562 * 22 13 12 24 24 N 1.32079 * 121.11299 * 359.97438 * 23 22 13 25 25 H 1.09002 * 109.47067 * 262.60939 * 1 2 3 26 26 H 1.08995 * 109.47205 * 22.60670 * 1 2 3 27 27 H 1.09001 * 109.47201 * 142.61024 * 1 2 3 28 28 H 1.08000 * 120.34301 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.45760 * 179.97438 * 4 3 2 30 30 H 1.07994 * 119.71507 * 180.30913 * 6 5 4 31 31 H 0.97004 * 120.00216 * 354.74703 * 10 8 7 32 32 H 1.07998 * 120.60199 * 0.02819 * 12 11 10 33 33 H 0.97005 * 119.99577 * 180.02562 * 17 16 14 34 34 H 1.08005 * 120.48392 * 179.97438 * 22 13 12 35 35 H 1.08005 * 119.44527 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1507 -0.0005 5 7 4.2500 0.0026 -0.0005 6 6 3.6200 -1.1536 0.0057 7 6 2.2251 -1.2019 0.0004 8 6 1.5180 -2.4997 0.0008 9 8 0.3039 -2.5304 -0.0492 10 7 2.2193 -3.6492 0.0566 11 6 1.5523 -4.8680 0.1675 12 6 2.2727 -6.0507 0.1042 13 6 1.5821 -7.2724 0.2187 14 6 2.2710 -8.5074 0.1600 15 1 1.7834 -9.3788 -0.2516 16 6 3.5848 -8.5996 0.6356 17 7 4.1288 -7.5842 1.2543 18 14 4.5603 -10.1730 0.3862 19 1 4.6844 -10.4534 -1.0668 20 1 5.9137 -10.0151 0.9766 21 1 3.8587 -11.3009 1.0499 22 6 0.1817 -7.2286 0.3927 23 6 -0.4468 -6.0057 0.4425 24 7 0.2376 -4.8816 0.3311 25 1 -0.3633 -0.1322 1.0191 26 1 -0.3633 0.9487 -0.3950 27 1 -0.3634 -0.8165 -0.6240 28 1 1.6966 2.1345 -0.0004 29 1 4.1558 2.0763 -0.0010 30 1 4.1875 -2.0724 0.0105 31 1 3.1885 -3.6284 0.0196 32 1 3.3442 -6.0353 -0.0296 33 1 5.0390 -7.6479 1.5834 34 1 -0.3879 -8.1416 0.4846 35 1 -1.5179 -5.9642 0.5750 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531925770.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:51 Heat of formation + Delta-G solvation = 21.116484 kcal Electronic energy + Delta-G solvation = -20906.059558 eV Core-core repulsion = 17675.357942 eV Total energy + Delta-G solvation = -3230.701616 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.91015 -40.68252 -39.34469 -36.27568 -35.66197 -34.65966 -32.78720 -32.36606 -30.39338 -28.79577 -27.89843 -25.67254 -23.88935 -23.82559 -22.74125 -21.55589 -19.49498 -19.07445 -17.88563 -17.36304 -17.06644 -16.84007 -16.39889 -16.15817 -16.05267 -15.61514 -15.04938 -14.99587 -14.57991 -14.34149 -14.13045 -13.80075 -13.67981 -13.43624 -13.20921 -12.97591 -12.86348 -12.68558 -12.12236 -11.92023 -11.52446 -11.18409 -11.10519 -10.58420 -10.46327 -10.23905 -9.90514 -9.63037 -8.91087 -8.58545 -6.58858 -0.41332 0.15392 0.77705 0.99316 1.41837 1.53035 1.55911 1.92558 2.01367 2.21461 2.76071 2.87328 3.24987 3.59380 3.67667 3.70273 3.77614 3.93789 4.20603 4.41989 4.54872 4.65391 4.71788 4.75881 4.80016 4.84171 4.89670 5.04275 5.17058 5.22864 5.38052 5.45550 5.58725 5.64095 5.91238 6.10335 6.42005 6.53205 6.77366 6.82376 6.84100 7.17818 7.75721 8.31969 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.023530 B = 0.004222 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.685713 B = 6630.108678 C = 7750.166463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.005 3.995 3 C -0.172 4.172 4 C 0.123 3.877 5 N -0.510 5.510 6 C 0.135 3.865 7 C -0.206 4.206 8 C 0.546 3.454 9 O -0.504 6.504 10 N -0.648 5.648 11 C 0.332 3.668 12 C -0.248 4.248 13 C 0.117 3.883 14 C -0.491 4.491 15 H 0.084 0.916 16 C 0.038 3.962 17 N -0.825 5.825 18 Si 0.989 3.011 19 H -0.259 1.259 20 H -0.268 1.268 21 H -0.261 1.261 22 C -0.291 4.291 23 C 0.113 3.887 24 N -0.572 5.572 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.180 0.820 29 H 0.199 0.801 30 H 0.167 0.833 31 H 0.419 0.581 32 H 0.123 0.877 33 H 0.290 0.710 34 H 0.118 0.882 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.073 13.854 -1.799 14.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.003 4.003 3 C -0.191 4.191 4 C -0.032 4.032 5 N -0.220 5.220 6 C -0.024 4.024 7 C -0.212 4.212 8 C 0.333 3.667 9 O -0.378 6.378 10 N -0.295 5.295 11 C 0.107 3.893 12 C -0.273 4.273 13 C 0.109 3.891 14 C -0.522 4.522 15 H 0.102 0.898 16 C -0.178 4.178 17 N -0.451 5.451 18 Si 0.809 3.191 19 H -0.184 1.184 20 H -0.192 1.192 21 H -0.185 1.185 22 C -0.314 4.314 23 C -0.041 4.041 24 N -0.291 5.291 25 H 0.092 0.908 26 H 0.114 0.886 27 H 0.093 0.907 28 H 0.197 0.803 29 H 0.216 0.784 30 H 0.184 0.816 31 H 0.258 0.742 32 H 0.141 0.859 33 H 0.101 0.899 34 H 0.136 0.864 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.882 14.819 -1.672 15.031 hybrid contribution 0.386 -1.829 0.073 1.870 sum 2.267 12.990 -1.599 13.283 Atomic orbital electron populations 1.21077 0.89035 1.04265 1.03484 1.20771 0.97973 0.91717 0.89844 1.22435 0.95519 0.98891 1.02268 1.23672 0.92323 0.96915 0.90303 1.67783 1.41260 0.98775 1.14139 1.23127 0.89949 0.97514 0.91761 1.20824 0.95826 0.93341 1.11175 1.18672 0.87324 0.83863 0.76794 1.90760 1.14015 1.86674 1.46310 1.43347 1.10607 1.03754 1.71813 1.18370 0.89572 0.84900 0.96503 1.21581 1.00583 0.90717 1.14444 1.18001 0.91690 0.93550 0.85852 1.19820 0.98596 0.95997 1.37757 0.89795 1.26773 0.97867 1.01592 0.91555 1.69774 1.15456 1.33003 1.26868 0.85140 0.77066 0.77079 0.79771 1.18356 1.19179 1.18533 1.22192 0.95869 0.98295 1.15055 1.22253 0.99247 0.87271 0.95347 1.67305 1.06659 1.31112 1.24045 0.90840 0.88621 0.90651 0.80308 0.78392 0.81646 0.74213 0.85899 0.89879 0.86361 0.82903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.02 8.95 71.23 0.64 -2.38 16 2 C 0.01 0.13 5.95 -19.40 -0.12 0.02 16 3 C -0.17 -2.95 9.78 22.33 0.22 -2.73 16 4 C 0.12 2.15 11.17 84.69 0.95 3.09 16 5 N -0.51 -12.25 10.35 -194.74 -2.01 -14.27 16 6 C 0.13 3.56 10.71 85.04 0.91 4.47 16 7 C -0.21 -6.19 5.89 -20.00 -0.12 -6.31 16 8 C 0.55 21.15 7.71 86.77 0.67 21.82 16 9 O -0.50 -22.55 11.70 -3.89 -0.05 -22.59 16 10 N -0.65 -26.05 5.34 -311.32 -1.66 -27.71 16 11 C 0.33 16.33 7.40 132.78 0.98 17.32 16 12 C -0.25 -12.80 8.57 22.99 0.20 -12.60 16 13 C 0.12 6.25 5.55 -21.12 -0.12 6.14 16 14 C -0.49 -25.41 9.12 23.52 0.21 -25.20 16 15 H 0.08 4.14 7.86 -2.91 -0.02 4.12 16 16 C 0.04 1.81 5.33 85.29 0.45 2.26 16 17 N -0.82 -40.82 10.90 21.84 0.24 -40.58 16 18 Si 0.99 36.30 29.57 68.60 2.03 38.33 16 19 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 20 H -0.27 -9.29 7.11 99.48 0.71 -8.58 16 21 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 22 C -0.29 -14.29 9.90 22.84 0.23 -14.06 16 23 C 0.11 5.36 11.15 84.50 0.94 6.31 16 24 N -0.57 -29.11 7.89 -193.57 -1.53 -30.64 16 25 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.10 1.62 8.06 -2.39 -0.02 1.60 16 27 H 0.07 2.39 5.78 -2.39 -0.01 2.38 16 28 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 29 H 0.20 1.77 8.06 -2.91 -0.02 1.75 16 30 H 0.17 3.90 6.43 -2.91 -0.02 3.88 16 31 H 0.42 14.05 6.77 -92.70 -0.63 13.42 16 32 H 0.12 6.33 6.40 -2.91 -0.02 6.31 16 33 H 0.29 12.97 8.29 -92.70 -0.77 12.20 16 34 H 0.12 5.29 8.06 -2.91 -0.02 5.26 16 35 H 0.15 6.18 8.06 -2.91 -0.02 6.15 16 Total: -1.00 -68.17 304.20 3.58 -64.59 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: 0.52 Total: 34.73 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 6.05 Total: -1.86 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -4.97 Total: -113.20 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.05 Total: -22.59 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 2.03 Total: 38.33 kcal Total: -68.17 3.58 -64.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531925770.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.702 kcal (2) G-P(sol) polarization free energy of solvation -68.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds