Wall clock time and date at job start Fri Apr 10 2020 15:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32279 * 120.49328 * 2 1 4 4 C 1.31782 * 120.89484 * 180.02562 * 3 2 1 5 5 N 1.31808 * 121.92945 * 359.95566 * 4 3 2 6 6 C 1.32250 * 120.89376 * 0.02562 * 5 4 3 7 7 C 1.39231 * 120.49376 * 180.02562 * 2 1 3 8 8 N 1.39900 * 120.87306 * 0.25228 * 7 2 1 9 9 C 1.34777 * 120.00275 * 146.62239 * 8 7 2 10 10 O 1.21554 * 119.99934 * 5.11182 * 9 8 7 11 11 C 1.47855 * 119.99890 * 185.10315 * 9 8 7 12 12 C 1.39930 * 120.02785 * 359.72662 * 11 9 8 13 13 C 1.38326 * 120.36003 * 179.76356 * 12 11 9 14 14 C 1.37761 * 120.40729 * 0.51487 * 13 12 11 15 15 C 1.40749 * 120.04458 * 359.74472 * 14 13 12 16 16 C 1.41440 * 120.17874 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00127 * 148.53497 * 16 15 14 18 18 C 1.39937 * 119.99587 * 328.53838 * 16 15 14 19 19 N 1.30828 * 120.00060 * 167.26531 * 18 16 15 20 20 Si 1.86796 * 120.00310 * 347.25605 * 18 16 15 21 21 H 1.48504 * 109.46901 * 92.48096 * 20 18 16 22 22 H 1.48501 * 109.47368 * 212.48546 * 20 18 16 23 23 H 1.48505 * 109.47095 * 332.48733 * 20 18 16 24 24 C 1.39008 * 120.02384 * 180.02562 * 11 9 8 25 25 H 1.08998 * 109.47233 * 269.99863 * 1 2 3 26 26 H 1.09003 * 109.47154 * 29.99666 * 1 2 3 27 27 H 1.08994 * 109.47340 * 149.99758 * 1 2 3 28 28 H 1.08003 * 119.03384 * 179.97438 * 4 3 2 29 29 H 1.08004 * 120.48885 * 180.02562 * 6 5 4 30 30 H 0.97006 * 119.99489 * 326.62473 * 8 7 2 31 31 H 1.07999 * 119.82206 * 359.97438 * 12 11 9 32 32 H 1.07997 * 119.79959 * 180.25481 * 13 12 11 33 33 H 1.08000 * 119.97906 * 179.76539 * 14 13 12 34 34 H 0.96997 * 120.00456 * 179.97438 * 19 18 16 35 35 H 1.07997 * 120.20195 * 359.95373 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1398 0.0000 4 6 3.4960 1.1491 -0.0005 5 7 4.2009 0.0353 -0.0002 6 6 3.6051 -1.1454 0.0002 7 6 2.2135 -1.1997 -0.0005 8 7 1.5431 -2.4276 -0.0064 9 6 2.0780 -3.4845 -0.6493 10 8 3.1847 -3.3981 -1.1446 11 6 1.3188 -4.7490 -0.7520 12 6 0.0472 -4.8510 -0.1770 13 6 -0.6712 -6.0292 -0.2732 14 6 -0.1391 -7.1189 -0.9268 15 6 1.1407 -7.0370 -1.5068 16 6 1.6896 -8.1539 -2.1789 17 1 2.3589 -8.0066 -3.0136 18 6 1.3653 -9.4499 -1.7624 19 7 1.6619 -10.4741 -2.5204 20 14 0.5090 -9.7176 -0.1240 21 1 -0.9613 -9.7404 -0.3318 22 1 0.9469 -11.0118 0.4579 23 1 0.8605 -8.6132 0.8046 24 6 1.8703 -5.8396 -1.4146 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5138 28 1 4.0135 2.0970 -0.0009 29 1 4.1892 -2.0539 0.0009 30 1 0.6932 -2.5183 0.4523 31 1 -0.3771 -4.0041 0.3418 32 1 -1.6535 -6.0966 0.1704 33 1 -0.7045 -8.0366 -0.9945 34 1 1.4375 -11.3725 -2.2315 35 1 2.8530 -5.7667 -1.8563 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001289526134.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:49 Heat of formation + Delta-G solvation = 31.865057 kcal Electronic energy + Delta-G solvation = -20781.502969 eV Core-core repulsion = 17551.267446 eV Total energy + Delta-G solvation = -3230.235523 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.43570 -39.63423 -37.59421 -35.49526 -34.24748 -33.81849 -31.63257 -30.50458 -30.12964 -28.45586 -25.52434 -24.71897 -23.17513 -22.65558 -20.89604 -20.43668 -18.74920 -17.32768 -17.32424 -16.83733 -16.43952 -15.81906 -15.17795 -14.83240 -14.49759 -14.21155 -13.83121 -13.79321 -13.30874 -13.20114 -12.95932 -12.88741 -12.62469 -12.22204 -11.81089 -11.49004 -11.23314 -11.12984 -10.86681 -10.69133 -10.59294 -10.10456 -9.90468 -9.75373 -9.37750 -9.22702 -8.51477 -8.04428 -7.91701 -7.08600 -4.68986 0.73515 0.97952 1.67986 2.36221 2.95964 2.96206 3.09653 3.14407 3.28894 3.70738 3.82684 3.92692 4.17715 4.31518 4.35481 4.72860 4.95920 5.15719 5.24105 5.25740 5.32728 5.62302 5.67884 5.80219 5.82549 6.01009 6.19655 6.46089 6.47717 6.51407 6.81181 6.91341 7.01664 7.18268 7.29942 7.36423 7.60010 7.77444 8.01564 8.15847 8.22782 8.37054 8.58362 9.93404 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.034805 B = 0.003791 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.284693 B = 7383.301992 C = 7901.341683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.143 3.857 3 N -0.505 5.505 4 C 0.266 3.734 5 N -0.505 5.505 6 C 0.145 3.855 7 C 0.057 3.943 8 N -0.664 5.664 9 C 0.567 3.433 10 O -0.524 6.524 11 C -0.111 4.111 12 C -0.216 4.216 13 C -0.081 4.081 14 C -0.218 4.218 15 C 0.081 3.919 16 C -0.439 4.439 17 H 0.095 0.905 18 C 0.080 3.920 19 N -0.804 5.804 20 Si 0.914 3.086 21 H -0.269 1.269 22 H -0.289 1.289 23 H -0.243 1.243 24 C -0.128 4.128 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.195 0.805 29 H 0.185 0.815 30 H 0.415 0.585 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.288 0.712 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.157 13.949 7.125 16.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.006 4.006 3 N -0.219 5.219 4 C -0.023 4.023 5 N -0.219 5.219 6 C -0.023 4.023 7 C -0.044 4.044 8 N -0.310 5.310 9 C 0.359 3.641 10 O -0.401 6.401 11 C -0.115 4.115 12 C -0.236 4.236 13 C -0.099 4.099 14 C -0.238 4.238 15 C 0.078 3.922 16 C -0.467 4.467 17 H 0.113 0.887 18 C -0.139 4.139 19 N -0.428 5.428 20 Si 0.741 3.259 21 H -0.195 1.195 22 H -0.217 1.217 23 H -0.166 1.166 24 C -0.148 4.148 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.099 0.901 28 H 0.212 0.788 29 H 0.202 0.798 30 H 0.254 0.746 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.099 0.901 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.867 14.513 6.635 16.213 hybrid contribution -1.235 -1.125 0.801 1.853 sum -4.102 13.387 7.435 15.853 Atomic orbital electron populations 1.20756 0.87726 1.04487 1.03646 1.21592 0.97605 0.86959 0.94474 1.68190 1.10574 1.29017 1.14157 1.24832 0.86637 0.97218 0.93571 1.68457 1.41454 0.98702 1.13330 1.23708 0.90760 0.96985 0.90860 1.19474 0.94293 0.87323 1.03282 1.43484 1.25471 1.07909 1.54186 1.19074 0.85667 0.83518 0.75821 1.90702 1.19750 1.82943 1.46680 1.19220 0.95480 0.91988 1.04762 1.20357 0.95746 0.98292 1.09238 1.20509 0.98091 0.93211 0.98070 1.21245 0.96633 0.98505 1.07405 1.17710 0.90752 0.93027 0.90708 1.19562 1.24470 0.88806 1.13826 0.88691 1.26186 0.93145 0.95543 0.99014 1.69642 1.36312 1.00647 1.36166 0.86281 0.79247 0.78139 0.82259 1.19505 1.21689 1.16621 1.21310 0.99349 0.92519 1.01668 0.89646 0.89454 0.90120 0.78818 0.79831 0.74604 0.88552 0.87987 0.87652 0.90147 0.86369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 9.73 36.00 0.35 -0.59 16 2 C 0.14 1.75 6.84 -82.03 -0.56 1.19 16 3 N -0.50 -6.39 10.37 -10.66 -0.11 -6.50 16 4 C 0.27 3.25 12.28 -92.15 -1.13 2.12 16 5 N -0.51 -7.26 10.43 -14.43 -0.15 -7.41 16 6 C 0.15 2.20 9.99 -16.99 -0.17 2.03 16 7 C 0.06 0.79 6.36 -83.42 -0.53 0.26 16 8 N -0.66 -9.06 4.79 -10.53 -0.05 -9.11 16 9 C 0.57 10.00 7.65 -12.32 -0.09 9.91 16 10 O -0.52 -10.57 13.72 5.32 0.07 -10.50 16 11 C -0.11 -2.15 5.87 -105.04 -0.62 -2.77 16 12 C -0.22 -3.73 9.55 -38.92 -0.37 -4.10 16 13 C -0.08 -1.50 10.01 -39.72 -0.40 -1.89 16 14 C -0.22 -4.75 7.02 -38.81 -0.27 -5.02 16 15 C 0.08 1.92 5.12 -106.87 -0.55 1.37 16 16 C -0.44 -11.26 9.60 -37.73 -0.36 -11.63 16 17 H 0.10 2.58 8.06 -52.49 -0.42 2.16 16 18 C 0.08 2.00 5.46 -17.34 -0.09 1.91 16 19 N -0.80 -20.55 13.93 55.55 0.77 -19.77 16 20 Si 0.91 19.46 24.41 -169.99 -4.15 15.31 16 21 H -0.27 -5.47 6.66 56.52 0.38 -5.10 16 22 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.24 -5.25 6.72 56.52 0.38 -4.87 16 24 C -0.13 -2.86 9.34 -38.44 -0.36 -3.22 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.65 7.25 -51.93 -0.38 0.28 16 28 H 0.20 1.65 8.06 -52.48 -0.42 1.23 16 29 H 0.18 2.97 6.19 -52.48 -0.32 2.64 16 30 H 0.42 4.50 5.94 -40.82 -0.24 4.26 16 31 H 0.10 1.26 6.39 -52.49 -0.34 0.93 16 32 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.11 2.28 4.46 -52.49 -0.23 2.05 16 34 H 0.29 6.64 8.30 -40.82 -0.34 6.30 16 35 H 0.12 2.68 7.64 -52.49 -0.40 2.28 16 LS Contribution 299.54 15.07 4.51 4.51 Total: -1.00 -28.28 299.54 -7.47 -35.75 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -3.21 Total: 8.15 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -5.16 Total: -10.43 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.46 Total: -42.79 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.07 Total: -10.50 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.15 Total: 15.31 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.28 -7.47 -35.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001289526134.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.613 kcal (2) G-P(sol) polarization free energy of solvation -28.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds