Wall clock time and date at job start Fri Apr 10 2020 15:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32279 * 120.49328 * 2 1 4 4 C 1.31782 * 120.89484 * 180.02562 * 3 2 1 5 5 N 1.31808 * 121.92945 * 359.95566 * 4 3 2 6 6 C 1.32250 * 120.89376 * 0.02562 * 5 4 3 7 7 C 1.39231 * 120.49376 * 180.02562 * 2 1 3 8 8 N 1.39900 * 120.87306 * 0.25228 * 7 2 1 9 9 C 1.34777 * 120.00275 * 146.62239 * 8 7 2 10 10 O 1.21554 * 119.99934 * 5.11182 * 9 8 7 11 11 C 1.47855 * 119.99890 * 185.10315 * 9 8 7 12 12 C 1.39930 * 120.02785 * 359.72662 * 11 9 8 13 13 C 1.38326 * 120.36003 * 179.76356 * 12 11 9 14 14 C 1.37761 * 120.40729 * 0.51487 * 13 12 11 15 15 C 1.40749 * 120.04458 * 359.74472 * 14 13 12 16 16 C 1.41440 * 120.17874 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00127 * 148.53497 * 16 15 14 18 18 C 1.39937 * 119.99587 * 328.53838 * 16 15 14 19 19 N 1.30828 * 120.00060 * 167.26531 * 18 16 15 20 20 Si 1.86796 * 120.00310 * 347.25605 * 18 16 15 21 21 H 1.48504 * 109.46901 * 92.48096 * 20 18 16 22 22 H 1.48501 * 109.47368 * 212.48546 * 20 18 16 23 23 H 1.48505 * 109.47095 * 332.48733 * 20 18 16 24 24 C 1.39008 * 120.02384 * 180.02562 * 11 9 8 25 25 H 1.08998 * 109.47233 * 269.99863 * 1 2 3 26 26 H 1.09003 * 109.47154 * 29.99666 * 1 2 3 27 27 H 1.08994 * 109.47340 * 149.99758 * 1 2 3 28 28 H 1.08003 * 119.03384 * 179.97438 * 4 3 2 29 29 H 1.08004 * 120.48885 * 180.02562 * 6 5 4 30 30 H 0.97006 * 119.99489 * 326.62473 * 8 7 2 31 31 H 1.07999 * 119.82206 * 359.97438 * 12 11 9 32 32 H 1.07997 * 119.79959 * 180.25481 * 13 12 11 33 33 H 1.08000 * 119.97906 * 179.76539 * 14 13 12 34 34 H 0.96997 * 120.00456 * 179.97438 * 19 18 16 35 35 H 1.07997 * 120.20195 * 359.95373 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1398 0.0000 4 6 3.4960 1.1491 -0.0005 5 7 4.2009 0.0353 -0.0002 6 6 3.6051 -1.1454 0.0002 7 6 2.2135 -1.1997 -0.0005 8 7 1.5431 -2.4276 -0.0064 9 6 2.0780 -3.4845 -0.6493 10 8 3.1847 -3.3981 -1.1446 11 6 1.3188 -4.7490 -0.7520 12 6 0.0472 -4.8510 -0.1770 13 6 -0.6712 -6.0292 -0.2732 14 6 -0.1391 -7.1189 -0.9268 15 6 1.1407 -7.0370 -1.5068 16 6 1.6896 -8.1539 -2.1789 17 1 2.3589 -8.0066 -3.0136 18 6 1.3653 -9.4499 -1.7624 19 7 1.6619 -10.4741 -2.5204 20 14 0.5090 -9.7176 -0.1240 21 1 -0.9613 -9.7404 -0.3318 22 1 0.9469 -11.0118 0.4579 23 1 0.8605 -8.6132 0.8046 24 6 1.8703 -5.8396 -1.4146 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5138 28 1 4.0135 2.0970 -0.0009 29 1 4.1892 -2.0539 0.0009 30 1 0.6932 -2.5183 0.4523 31 1 -0.3771 -4.0041 0.3418 32 1 -1.6535 -6.0966 0.1704 33 1 -0.7045 -8.0366 -0.9945 34 1 1.4375 -11.3725 -2.2315 35 1 2.8530 -5.7667 -1.8563 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001289526134.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:48 Heat of formation + Delta-G solvation = 13.813876 kcal Electronic energy + Delta-G solvation = -20782.285727 eV Core-core repulsion = 17551.267446 eV Total energy + Delta-G solvation = -3231.018281 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.52630 -40.97823 -39.19351 -36.70960 -35.57531 -35.26981 -33.04052 -32.01892 -31.50860 -29.38910 -27.21451 -26.01734 -24.37563 -23.79103 -22.51678 -21.87217 -20.14408 -18.79003 -18.50062 -17.96258 -17.78853 -17.30513 -16.50442 -16.34917 -15.79797 -15.68113 -15.46746 -14.85983 -14.60434 -14.48687 -14.17969 -13.91176 -13.90078 -13.40369 -13.31930 -12.91233 -12.68731 -12.49995 -12.37898 -12.20972 -11.73515 -11.62207 -11.56785 -11.28060 -10.98430 -10.32254 -9.77960 -9.63781 -9.46610 -8.89301 -6.58556 -0.35595 -0.06177 0.17760 0.72528 1.25565 1.41943 1.48381 1.72519 1.81674 2.10765 2.60544 2.70669 3.05675 3.22479 3.30257 3.40747 3.58784 3.85241 4.21263 4.23725 4.36231 4.53063 4.54049 4.70419 4.75440 4.83380 4.88891 4.92434 5.11166 5.13177 5.38167 5.44979 5.57311 5.66342 5.82582 5.89473 6.02386 6.23527 6.31017 6.61781 6.72399 6.90633 7.02128 8.19843 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.034805 B = 0.003791 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.284693 B = 7383.301992 C = 7901.341683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.157 3.843 3 N -0.512 5.512 4 C 0.270 3.730 5 N -0.527 5.527 6 C 0.127 3.873 7 C 0.039 3.961 8 N -0.638 5.638 9 C 0.568 3.432 10 O -0.558 6.558 11 C -0.113 4.113 12 C -0.175 4.175 13 C -0.081 4.081 14 C -0.220 4.220 15 C 0.065 3.935 16 C -0.488 4.488 17 H 0.048 0.952 18 C 0.040 3.960 19 N -0.857 5.857 20 Si 0.971 3.029 21 H -0.245 1.245 22 H -0.283 1.283 23 H -0.245 1.245 24 C -0.159 4.159 25 H 0.113 0.887 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.229 0.771 29 H 0.164 0.836 30 H 0.432 0.568 31 H 0.157 0.843 32 H 0.152 0.848 33 H 0.108 0.892 34 H 0.294 0.706 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.874 17.196 10.156 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.007 3.993 3 N -0.226 5.226 4 C -0.017 4.017 5 N -0.242 5.242 6 C -0.040 4.040 7 C -0.061 4.061 8 N -0.286 5.286 9 C 0.360 3.640 10 O -0.437 6.437 11 C -0.117 4.117 12 C -0.194 4.194 13 C -0.099 4.099 14 C -0.240 4.240 15 C 0.062 3.938 16 C -0.518 4.518 17 H 0.066 0.934 18 C -0.174 4.174 19 N -0.484 5.484 20 Si 0.793 3.207 21 H -0.170 1.170 22 H -0.210 1.210 23 H -0.169 1.169 24 C -0.179 4.179 25 H 0.131 0.869 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.245 0.755 29 H 0.181 0.819 30 H 0.274 0.726 31 H 0.174 0.826 32 H 0.170 0.830 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.609 17.797 9.680 21.310 hybrid contribution -0.105 -1.704 -0.082 1.709 sum -6.714 16.093 9.598 19.904 Atomic orbital electron populations 1.20954 0.84635 1.05438 1.05642 1.22210 0.99441 0.85886 0.91750 1.68356 1.10643 1.28982 1.14643 1.25561 0.86910 0.97758 0.91504 1.68466 1.42165 0.99012 1.14522 1.23526 0.91717 0.96878 0.91832 1.19465 0.93818 0.87778 1.05030 1.43052 1.25637 1.06855 1.53100 1.18815 0.85142 0.83927 0.76122 1.90710 1.21239 1.83459 1.48282 1.19437 0.96646 0.91767 1.03805 1.21068 0.93530 0.99537 1.05258 1.21072 1.00038 0.91984 0.96774 1.21479 0.95535 1.00055 1.06886 1.17762 0.91989 0.92633 0.91385 1.19488 1.26502 0.90909 1.14856 0.93352 1.26951 0.93711 0.94691 1.02005 1.69696 1.39287 1.01239 1.38145 0.85435 0.79403 0.77996 0.77823 1.17010 1.20978 1.16884 1.21223 0.99006 0.93953 1.03747 0.86873 0.88593 0.89094 0.75499 0.81924 0.72587 0.82594 0.83013 0.87472 0.89533 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.73 71.23 0.69 -0.60 16 2 C 0.16 3.25 6.84 42.73 0.29 3.54 16 3 N -0.51 -11.25 10.37 -187.63 -1.95 -13.19 16 4 C 0.27 5.96 12.28 180.88 2.22 8.18 16 5 N -0.53 -14.63 10.43 -199.56 -2.08 -16.71 16 6 C 0.13 3.80 9.99 84.88 0.85 4.65 16 7 C 0.04 0.98 6.36 38.34 0.24 1.23 16 8 N -0.64 -15.22 4.79 -305.50 -1.46 -16.68 16 9 C 0.57 19.25 7.65 86.79 0.66 19.91 16 10 O -0.56 -23.08 13.72 -3.88 -0.05 -23.13 16 11 C -0.11 -4.16 5.87 -20.14 -0.12 -4.28 16 12 C -0.17 -5.03 9.55 22.70 0.22 -4.81 16 13 C -0.08 -2.56 10.01 22.18 0.22 -2.34 16 14 C -0.22 -9.12 7.02 22.77 0.16 -8.96 16 15 C 0.06 3.16 5.12 -21.32 -0.11 3.05 16 16 C -0.49 -27.25 9.60 23.47 0.23 -27.03 16 17 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16 18 C 0.04 2.09 5.46 85.25 0.47 2.56 16 19 N -0.86 -46.92 13.93 21.82 0.30 -46.62 16 20 Si 0.97 40.19 24.41 68.60 1.67 41.87 16 21 H -0.25 -9.13 6.66 99.48 0.66 -8.47 16 22 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.25 -10.09 6.72 99.48 0.67 -9.42 16 24 C -0.16 -7.36 9.34 23.01 0.21 -7.14 16 25 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.09 0.92 7.25 -2.39 -0.02 0.91 16 28 H 0.23 3.16 8.06 -2.91 -0.02 3.14 16 29 H 0.16 5.48 6.19 -2.91 -0.02 5.46 16 30 H 0.43 6.83 5.94 -92.70 -0.55 6.28 16 31 H 0.16 2.70 6.39 -2.91 -0.02 2.68 16 32 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 33 H 0.11 4.39 4.46 -2.91 -0.01 4.38 16 34 H 0.29 14.39 8.30 -92.71 -0.77 13.62 16 35 H 0.09 4.60 7.64 -2.91 -0.02 4.58 16 Total: -1.00 -68.86 299.54 3.19 -65.67 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.52 Total: 20.83 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 6.24 Total: -12.03 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -5.18 Total: -93.20 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.13 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 1.67 Total: 41.87 kcal Total: -68.86 3.19 -65.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001289526134.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.484 kcal (2) G-P(sol) polarization free energy of solvation -68.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds