Wall clock time and date at job start Fri Apr 10 2020 15:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32161 * 120.53748 * 2 1 4 4 C 1.31853 * 120.97211 * 180.02562 * 3 2 1 5 5 N 1.31887 * 122.09776 * 359.97438 * 4 3 2 6 6 C 1.32133 * 120.96941 * 0.02562 * 5 4 3 7 7 C 1.39938 * 120.54299 * 180.02562 * 2 1 3 8 8 C 1.47803 * 120.93858 * 359.97438 * 7 2 1 9 9 O 1.21561 * 120.00180 * 353.43993 * 8 7 2 10 10 N 1.34782 * 120.00072 * 173.44295 * 8 7 2 11 11 C 1.39861 * 119.99795 * 184.95460 * 10 8 7 12 12 C 1.39310 * 119.94864 * 324.08543 * 11 10 8 13 13 C 1.38491 * 120.41934 * 179.76497 * 12 11 10 14 14 C 1.37684 * 120.32718 * 0.50868 * 13 12 11 15 15 C 1.40739 * 119.88726 * 359.74989 * 14 13 12 16 16 C 1.41411 * 120.21053 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99369 * 29.28454 * 16 15 14 18 18 C 1.39936 * 120.00201 * 209.29182 * 16 15 14 19 19 N 1.30828 * 120.00074 * 10.03330 * 18 16 15 20 20 Si 1.86800 * 119.99784 * 190.03617 * 18 16 15 21 21 H 1.48504 * 109.47051 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46964 * 119.99771 * 20 18 16 23 23 H 1.48501 * 109.47073 * 239.99835 * 20 18 16 24 24 C 1.38268 * 119.94674 * 144.36046 * 11 10 8 25 25 H 1.08999 * 109.46582 * 263.68367 * 1 2 3 26 26 H 1.08995 * 109.47332 * 23.68346 * 1 2 3 27 27 H 1.09000 * 109.47184 * 143.68555 * 1 2 3 28 28 H 1.08004 * 118.95184 * 180.02562 * 4 3 2 29 29 H 1.07996 * 120.53899 * 179.97438 * 6 5 4 30 30 H 0.96996 * 119.99913 * 4.95391 * 10 8 7 31 31 H 1.07993 * 119.78641 * 0.02562 * 12 11 10 32 32 H 1.08002 * 119.83234 * 180.23352 * 13 12 11 33 33 H 1.07998 * 120.05162 * 179.76295 * 14 13 12 34 34 H 0.96995 * 119.99981 * 180.02562 * 19 18 16 35 35 H 1.08001 * 120.15929 * 359.95165 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1483 -0.0005 5 7 4.2063 0.0364 -0.0005 6 6 3.6167 -1.1461 -0.0006 7 6 2.2181 -1.2052 -0.0005 8 6 1.5125 -2.5039 -0.0006 9 8 0.3034 -2.5387 0.1202 10 7 2.2096 -3.6497 -0.1344 11 6 1.5351 -4.8705 -0.2386 12 6 0.3627 -5.0812 0.4839 13 6 -0.3157 -6.2844 0.3843 14 6 0.1673 -7.2901 -0.4225 15 6 1.3534 -7.0936 -1.1542 16 6 1.8553 -8.1217 -1.9854 17 1 1.1764 -8.8268 -2.4417 18 6 3.2316 -8.2254 -2.2164 19 7 4.0687 -7.5035 -1.5165 20 14 3.8735 -9.3947 -3.5241 21 1 2.7315 -10.0910 -4.1692 22 1 4.6277 -8.6270 -4.5474 23 1 4.7718 -10.3960 -2.8950 24 6 2.0359 -5.8684 -1.0541 25 1 -0.3632 -0.1131 1.0214 26 1 -0.3634 0.9411 -0.4128 27 1 -0.3633 -0.8281 -0.6086 28 1 4.0126 2.0973 -0.0001 29 1 4.2043 -2.0523 -0.0010 30 1 3.1790 -3.6276 -0.1584 31 1 -0.0217 -4.2997 1.1225 32 1 -1.2257 -6.4362 0.9458 33 1 -0.3632 -8.2281 -0.4939 34 1 5.0226 -7.5752 -1.6769 35 1 2.9467 -5.7073 -1.6117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001543578278.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:01 Heat of formation + Delta-G solvation = 35.282854 kcal Electronic energy + Delta-G solvation = -20919.690671 eV Core-core repulsion = 17689.603355 eV Total energy + Delta-G solvation = -3230.087316 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.41307 -39.52534 -37.29565 -34.94185 -34.10892 -33.43655 -32.66147 -29.61790 -29.23729 -27.96845 -25.43713 -25.19292 -23.12000 -21.79853 -21.18633 -19.91563 -18.00359 -17.76615 -17.27640 -16.89975 -15.71467 -15.47992 -15.02164 -14.73322 -14.48790 -14.22182 -13.92480 -13.25394 -13.12633 -12.94622 -12.86432 -12.44062 -12.29898 -11.74492 -11.69731 -11.27174 -11.16233 -10.84252 -10.72878 -10.66963 -10.04743 -9.82674 -9.72977 -9.57217 -9.47071 -9.25410 -8.99979 -7.40303 -7.11918 -6.71790 -4.44483 0.30984 0.83472 2.54557 2.79917 3.05384 3.09324 3.10730 3.19512 3.38116 3.70407 3.84321 3.89004 3.91362 4.20328 4.60066 4.63327 4.87771 5.09347 5.37538 5.58614 5.62496 5.72264 5.96248 6.18621 6.28074 6.57161 6.57752 6.70956 6.78545 6.95515 7.00563 7.20128 7.50380 7.57198 7.80819 7.85030 7.96557 8.02982 8.22246 8.41669 8.61579 8.83894 8.88070 10.18852 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.021591 B = 0.004300 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.552357 B = 6510.458416 C = 7538.700463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.233 3.767 3 N -0.527 5.527 4 C 0.312 3.688 5 N -0.528 5.528 6 C 0.184 3.816 7 C -0.238 4.238 8 C 0.559 3.441 9 O -0.511 6.511 10 N -0.653 5.653 11 C 0.136 3.864 12 C -0.220 4.220 13 C -0.090 4.090 14 C -0.220 4.220 15 C 0.118 3.882 16 C -0.464 4.464 17 H 0.078 0.922 18 C 0.074 3.926 19 N -0.809 5.809 20 Si 0.910 3.090 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.275 1.275 24 C -0.171 4.171 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.200 0.800 29 H 0.173 0.827 30 H 0.401 0.599 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.278 0.722 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.044 11.591 1.853 11.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.087 3.913 3 N -0.242 5.242 4 C 0.025 3.975 5 N -0.242 5.242 6 C 0.018 3.982 7 C -0.245 4.245 8 C 0.345 3.655 9 O -0.387 6.387 10 N -0.296 5.296 11 C 0.045 3.955 12 C -0.241 4.241 13 C -0.109 4.109 14 C -0.240 4.240 15 C 0.115 3.885 16 C -0.494 4.494 17 H 0.096 0.904 18 C -0.141 4.141 19 N -0.435 5.435 20 Si 0.735 3.265 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.200 1.200 24 C -0.192 4.192 25 H 0.109 0.891 26 H 0.093 0.907 27 H 0.127 0.873 28 H 0.217 0.783 29 H 0.190 0.810 30 H 0.236 0.764 31 H 0.126 0.874 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.916 12.503 1.952 12.687 hybrid contribution 0.771 -1.290 -0.524 1.592 sum 1.687 11.213 1.428 11.429 Atomic orbital electron populations 1.21108 0.86467 1.04487 1.04854 1.22011 0.98245 0.86424 0.84609 1.68412 1.10250 1.29777 1.15744 1.25190 0.86849 0.97246 0.88231 1.68447 1.41508 0.98932 1.15328 1.23541 0.90981 0.96751 0.86968 1.21745 0.96245 0.96537 1.09989 1.17733 0.87088 0.82881 0.77833 1.90738 1.13241 1.86490 1.48270 1.43306 1.09840 1.05405 1.71094 1.17615 0.94889 0.83985 0.99059 1.20467 0.98669 0.98479 1.06440 1.20462 0.98088 0.93551 0.98832 1.21135 1.01292 0.98435 1.03090 1.17377 0.90145 0.91194 0.89760 1.19571 0.92039 1.11924 1.25877 0.90362 1.25848 0.97037 0.95874 0.95371 1.69770 1.03893 1.35646 1.34234 0.86229 0.79351 0.80205 0.80733 1.18494 1.19866 1.20017 1.21158 1.03599 0.92734 1.01757 0.89074 0.90723 0.87258 0.78348 0.81007 0.76366 0.87398 0.88883 0.88728 0.91136 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 8.98 36.01 0.32 -1.07 16 2 C 0.23 3.17 6.87 -81.81 -0.56 2.61 16 3 N -0.53 -6.68 10.36 -10.47 -0.11 -6.78 16 4 C 0.31 3.45 12.27 -92.02 -1.13 2.32 16 5 N -0.53 -6.44 10.42 -14.24 -0.15 -6.59 16 6 C 0.18 2.27 10.81 -16.77 -0.18 2.09 16 7 C -0.24 -3.35 5.91 -104.70 -0.62 -3.96 16 8 C 0.56 9.51 7.56 -12.35 -0.09 9.41 16 9 O -0.51 -9.83 11.01 5.31 0.06 -9.77 16 10 N -0.65 -11.64 5.29 -10.77 -0.06 -11.70 16 11 C 0.14 3.02 6.27 -83.78 -0.53 2.50 16 12 C -0.22 -4.96 8.70 -39.09 -0.34 -5.30 16 13 C -0.09 -2.03 10.02 -39.69 -0.40 -2.43 16 14 C -0.22 -5.27 9.79 -38.84 -0.38 -5.65 16 15 C 0.12 3.04 5.55 -106.85 -0.59 2.45 16 16 C -0.46 -11.92 9.06 -37.74 -0.34 -12.26 16 17 H 0.08 1.95 7.87 -52.48 -0.41 1.54 16 18 C 0.07 1.80 5.26 -17.34 -0.09 1.71 16 19 N -0.81 -19.87 10.84 55.55 0.60 -19.27 16 20 Si 0.91 18.23 29.57 -169.99 -5.03 13.20 16 21 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 C -0.17 -4.18 8.57 -38.68 -0.33 -4.52 16 25 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.11 1.55 5.97 -51.93 -0.31 1.24 16 28 H 0.20 1.41 8.06 -52.48 -0.42 0.99 16 29 H 0.17 1.72 6.57 -52.49 -0.34 1.37 16 30 H 0.40 5.98 6.99 -40.82 -0.29 5.69 16 31 H 0.11 2.38 6.25 -52.49 -0.33 2.06 16 32 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 33 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 34 H 0.28 6.21 8.30 -40.82 -0.34 5.88 16 35 H 0.13 3.09 6.24 -52.49 -0.33 2.77 16 LS Contribution 303.05 15.07 4.57 4.57 Total: -1.00 -28.99 303.05 -8.63 -37.62 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -3.26 Total: 10.83 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -5.26 Total: -12.11 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.29 Total: -44.34 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.06 Total: -9.77 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.99 -8.63 -37.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001543578278.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.907 kcal (2) G-P(sol) polarization free energy of solvation -28.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds