Wall clock time and date at job start Fri Apr 10 2020 15:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32161 * 120.53748 * 2 1 4 4 C 1.31853 * 120.97211 * 180.02562 * 3 2 1 5 5 N 1.31887 * 122.09776 * 359.97438 * 4 3 2 6 6 C 1.32133 * 120.96941 * 0.02562 * 5 4 3 7 7 C 1.39938 * 120.54299 * 180.02562 * 2 1 3 8 8 C 1.47803 * 120.93858 * 359.97438 * 7 2 1 9 9 O 1.21561 * 120.00180 * 353.43993 * 8 7 2 10 10 N 1.34782 * 120.00072 * 173.44295 * 8 7 2 11 11 C 1.39861 * 119.99795 * 184.95460 * 10 8 7 12 12 C 1.39310 * 119.94864 * 324.08543 * 11 10 8 13 13 C 1.38491 * 120.41934 * 179.76497 * 12 11 10 14 14 C 1.37684 * 120.32718 * 0.50868 * 13 12 11 15 15 C 1.40739 * 119.88726 * 359.74989 * 14 13 12 16 16 C 1.41411 * 120.21053 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99369 * 29.28454 * 16 15 14 18 18 C 1.39936 * 120.00201 * 209.29182 * 16 15 14 19 19 N 1.30828 * 120.00074 * 10.03330 * 18 16 15 20 20 Si 1.86800 * 119.99784 * 190.03617 * 18 16 15 21 21 H 1.48504 * 109.47051 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46964 * 119.99771 * 20 18 16 23 23 H 1.48501 * 109.47073 * 239.99835 * 20 18 16 24 24 C 1.38268 * 119.94674 * 144.36046 * 11 10 8 25 25 H 1.08999 * 109.46582 * 263.68367 * 1 2 3 26 26 H 1.08995 * 109.47332 * 23.68346 * 1 2 3 27 27 H 1.09000 * 109.47184 * 143.68555 * 1 2 3 28 28 H 1.08004 * 118.95184 * 180.02562 * 4 3 2 29 29 H 1.07996 * 120.53899 * 179.97438 * 6 5 4 30 30 H 0.96996 * 119.99913 * 4.95391 * 10 8 7 31 31 H 1.07993 * 119.78641 * 0.02562 * 12 11 10 32 32 H 1.08002 * 119.83234 * 180.23352 * 13 12 11 33 33 H 1.07998 * 120.05162 * 179.76295 * 14 13 12 34 34 H 0.96995 * 119.99981 * 180.02562 * 19 18 16 35 35 H 1.08001 * 120.15929 * 359.95165 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1483 -0.0005 5 7 4.2063 0.0364 -0.0005 6 6 3.6167 -1.1461 -0.0006 7 6 2.2181 -1.2052 -0.0005 8 6 1.5125 -2.5039 -0.0006 9 8 0.3034 -2.5387 0.1202 10 7 2.2096 -3.6497 -0.1344 11 6 1.5351 -4.8705 -0.2386 12 6 0.3627 -5.0812 0.4839 13 6 -0.3157 -6.2844 0.3843 14 6 0.1673 -7.2901 -0.4225 15 6 1.3534 -7.0936 -1.1542 16 6 1.8553 -8.1217 -1.9854 17 1 1.1764 -8.8268 -2.4417 18 6 3.2316 -8.2254 -2.2164 19 7 4.0687 -7.5035 -1.5165 20 14 3.8735 -9.3947 -3.5241 21 1 2.7315 -10.0910 -4.1692 22 1 4.6277 -8.6270 -4.5474 23 1 4.7718 -10.3960 -2.8950 24 6 2.0359 -5.8684 -1.0541 25 1 -0.3632 -0.1131 1.0214 26 1 -0.3634 0.9411 -0.4128 27 1 -0.3633 -0.8281 -0.6086 28 1 4.0126 2.0973 -0.0001 29 1 4.2043 -2.0523 -0.0010 30 1 3.1790 -3.6276 -0.1584 31 1 -0.0217 -4.2997 1.1225 32 1 -1.2257 -6.4362 0.9458 33 1 -0.3632 -8.2281 -0.4939 34 1 5.0226 -7.5752 -1.6769 35 1 2.9467 -5.7073 -1.6117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001543578278.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:00 Heat of formation + Delta-G solvation = 19.128541 kcal Electronic energy + Delta-G solvation = -20920.391175 eV Core-core repulsion = 17689.603355 eV Total energy + Delta-G solvation = -3230.787820 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.47480 -40.93322 -38.98595 -36.30053 -35.44811 -35.04461 -33.79187 -31.44062 -30.63677 -29.28699 -27.18285 -26.38567 -24.16064 -23.30784 -22.89587 -21.51200 -19.39599 -19.11695 -18.68249 -17.89050 -17.30627 -16.76992 -16.63829 -16.41094 -15.85118 -15.61555 -15.00738 -14.72000 -14.57652 -14.19085 -14.16375 -13.96317 -13.51068 -13.39402 -12.97907 -12.80835 -12.78276 -12.60893 -12.28010 -11.78873 -11.71026 -11.57979 -11.18880 -10.98070 -10.79365 -10.55847 -10.45324 -9.27010 -8.87682 -8.51307 -6.36328 -0.71622 -0.15843 0.86326 1.05417 1.42008 1.50749 1.55258 1.75832 2.02100 2.24326 2.63231 2.79379 2.90844 3.00242 3.21849 3.51468 3.68241 3.76707 4.22698 4.39279 4.48195 4.65635 4.75340 4.76812 4.83037 4.99052 5.11703 5.16610 5.19617 5.31367 5.37431 5.72999 5.76342 5.83820 6.03702 6.10989 6.32226 6.50812 6.69562 6.86184 6.96348 6.96446 7.11812 8.39705 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.021591 B = 0.004300 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.552357 B = 6510.458416 C = 7538.700463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.229 3.771 3 N -0.535 5.535 4 C 0.320 3.680 5 N -0.536 5.536 6 C 0.194 3.806 7 C -0.254 4.254 8 C 0.563 3.437 9 O -0.535 6.535 10 N -0.651 5.651 11 C 0.144 3.856 12 C -0.229 4.229 13 C -0.088 4.088 14 C -0.240 4.240 15 C 0.090 3.910 16 C -0.499 4.499 17 H 0.074 0.926 18 C 0.037 3.963 19 N -0.831 5.831 20 Si 0.981 3.019 21 H -0.262 1.262 22 H -0.265 1.265 23 H -0.267 1.267 24 C -0.191 4.191 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.240 0.760 29 H 0.192 0.808 30 H 0.414 0.586 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.287 0.713 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.125 12.828 1.759 13.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.083 3.917 3 N -0.250 5.250 4 C 0.034 3.966 5 N -0.250 5.250 6 C 0.027 3.973 7 C -0.261 4.261 8 C 0.351 3.649 9 O -0.413 6.413 10 N -0.296 5.296 11 C 0.052 3.948 12 C -0.250 4.250 13 C -0.107 4.107 14 C -0.260 4.260 15 C 0.087 3.913 16 C -0.529 4.529 17 H 0.092 0.908 18 C -0.177 4.177 19 N -0.458 5.458 20 Si 0.802 3.198 21 H -0.186 1.186 22 H -0.190 1.190 23 H -0.192 1.192 24 C -0.212 4.212 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.256 0.744 29 H 0.209 0.791 30 H 0.252 0.748 31 H 0.132 0.868 32 H 0.139 0.861 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.010 13.777 1.872 14.048 hybrid contribution 0.438 -1.522 -0.430 1.641 sum 2.448 12.255 1.442 12.580 Atomic orbital electron populations 1.21042 0.86121 1.04569 1.04737 1.22188 0.98769 0.86631 0.84081 1.68518 1.11023 1.29005 1.16422 1.26046 0.86478 0.98416 0.85675 1.68581 1.41475 0.99067 1.15875 1.23847 0.90349 0.97777 0.85362 1.21448 0.96925 0.94929 1.12845 1.18098 0.86867 0.83414 0.76539 1.90724 1.14457 1.86954 1.49204 1.43217 1.10535 1.04418 1.71399 1.17634 0.94646 0.84992 0.97565 1.20677 0.98960 0.98734 1.06631 1.20775 0.98802 0.92957 0.98169 1.21300 1.01395 0.99389 1.03873 1.17758 0.91160 0.91921 0.90445 1.19801 0.93169 1.12658 1.27317 0.90791 1.26620 0.96650 0.97401 0.96998 1.69809 1.04534 1.36466 1.34969 0.85171 0.78574 0.78092 0.77947 1.18572 1.18983 1.19213 1.21092 1.03776 0.93297 1.03061 0.88767 0.88965 0.89210 0.74434 0.79148 0.74807 0.86833 0.86091 0.88077 0.90245 0.86652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.59 8.98 71.24 0.64 -1.95 16 2 C 0.23 5.91 6.87 42.92 0.29 6.20 16 3 N -0.53 -12.27 10.36 -187.05 -1.94 -14.21 16 4 C 0.32 6.08 12.27 180.84 2.22 8.30 16 5 N -0.54 -11.64 10.42 -198.96 -2.07 -13.72 16 6 C 0.19 4.41 10.81 85.07 0.92 5.33 16 7 C -0.25 -6.85 5.91 -19.91 -0.12 -6.97 16 8 C 0.56 18.93 7.56 86.77 0.66 19.59 16 9 O -0.54 -20.61 11.01 -3.91 -0.04 -20.66 16 10 N -0.65 -23.06 5.29 -306.26 -1.62 -24.68 16 11 C 0.14 6.48 6.27 38.12 0.24 6.72 16 12 C -0.23 -10.36 8.70 22.59 0.20 -10.16 16 13 C -0.09 -3.96 10.02 22.20 0.22 -3.73 16 14 C -0.24 -11.72 9.79 22.75 0.22 -11.50 16 15 C 0.09 4.76 5.55 -21.31 -0.12 4.64 16 16 C -0.50 -26.34 9.06 23.46 0.21 -26.12 16 17 H 0.07 3.80 7.87 -2.91 -0.02 3.78 16 18 C 0.04 1.80 5.26 85.25 0.45 2.25 16 19 N -0.83 -41.11 10.84 21.82 0.24 -40.87 16 20 Si 0.98 37.25 29.57 68.60 2.03 39.28 16 21 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 22 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 23 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 24 C -0.19 -9.55 8.57 22.85 0.20 -9.35 16 25 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.09 2.54 5.97 -2.39 -0.01 2.53 16 28 H 0.24 2.38 8.06 -2.91 -0.02 2.36 16 29 H 0.19 3.44 6.57 -2.91 -0.02 3.42 16 30 H 0.41 12.13 6.99 -92.71 -0.65 11.49 16 31 H 0.11 4.98 6.25 -2.91 -0.02 4.97 16 32 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 33 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 34 H 0.29 12.76 8.30 -92.71 -0.77 11.99 16 35 H 0.12 5.89 6.24 -2.91 -0.02 5.87 16 Total: -1.00 -62.51 303.05 3.32 -59.19 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: 0.50 Total: 32.42 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 6.23 Total: -16.75 kcal Atomic # 7 Polarization: -88.08 SS G_CDS: -5.39 Total: -93.48 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.04 Total: -20.66 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.28 kcal Total: -62.51 3.32 -59.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001543578278.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.316 kcal (2) G-P(sol) polarization free energy of solvation -62.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds