Wall clock time and date at job start Fri Apr 10 2020 15:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38829 * 120.41700 * 2 1 4 4 C 1.38777 * 118.51293 * 179.97438 * 3 2 1 5 5 N 1.32118 * 119.16368 * 359.97438 * 4 3 2 6 6 C 1.32464 * 120.77387 * 0.02562 * 5 4 3 7 7 C 1.48484 * 119.18984 * 180.02562 * 6 5 4 8 8 O 1.21487 * 119.99946 * 179.97438 * 7 6 5 9 9 N 1.34771 * 120.00319 * 0.02562 * 7 6 5 10 10 C 1.39824 * 120.00401 * 174.89134 * 9 7 6 11 11 C 1.39324 * 119.95051 * 325.51796 * 10 9 7 12 12 C 1.38474 * 120.42694 * 179.72301 * 11 10 9 13 13 C 1.37698 * 120.32404 * 0.54290 * 12 11 10 14 14 C 1.40739 * 119.88720 * 359.73212 * 13 12 11 15 15 C 1.41418 * 120.20328 * 180.02562 * 14 13 12 16 16 H 1.07993 * 119.99797 * 205.16990 * 15 14 13 17 17 C 1.39938 * 119.99776 * 25.17986 * 15 14 13 18 18 N 1.30821 * 120.00289 * 16.79555 * 17 15 14 19 19 Si 1.86804 * 119.99391 * 196.79467 * 17 15 14 20 20 H 1.48503 * 109.46855 * 59.99937 * 19 17 15 21 21 H 1.48499 * 109.46600 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47079 * 299.99622 * 19 17 15 23 23 C 1.38277 * 119.95416 * 145.78431 * 10 9 7 24 24 N 1.32095 * 120.42024 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.46615 * 270.01937 * 1 2 3 26 26 H 1.08995 * 109.47262 * 30.02129 * 1 2 3 27 27 H 1.08993 * 109.47231 * 150.02334 * 1 2 3 28 28 H 1.08004 * 120.74088 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.41558 * 180.27687 * 4 3 2 30 30 H 0.97002 * 119.99732 * 354.88791 * 9 7 6 31 31 H 1.08004 * 119.78469 * 359.97438 * 11 10 9 32 32 H 1.07999 * 119.84036 * 180.25470 * 12 11 10 33 33 H 1.07999 * 120.05025 * 179.74949 * 13 12 11 34 34 H 0.97000 * 119.99814 * 180.02562 * 18 17 15 35 35 H 1.08002 * 120.16035 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1972 0.0000 4 6 3.5969 1.1511 0.0005 5 7 4.2020 -0.0234 0.0016 6 6 3.5007 -1.1471 0.0015 7 6 4.2170 -2.4478 0.0033 8 8 3.5885 -3.4874 0.0038 9 7 5.5644 -2.4750 0.0054 10 6 6.2389 -3.6949 0.1148 11 6 5.7030 -4.7187 0.8932 12 6 6.3598 -5.9327 1.0039 13 6 7.5564 -6.1376 0.3542 14 6 8.1129 -5.1107 -0.4310 15 6 9.3412 -5.3140 -1.1016 16 1 9.9656 -4.4694 -1.3526 17 6 9.7475 -6.6096 -1.4401 18 7 8.8785 -7.5875 -1.4442 19 14 11.5306 -6.9426 -1.8862 20 1 12.4033 -6.5807 -0.7405 21 1 11.7010 -8.3837 -2.2018 22 1 11.9050 -6.1284 -3.0702 23 6 7.4396 -3.8816 -0.5451 24 7 2.1758 -1.1391 0.0005 25 1 -0.3632 0.0003 1.0277 26 1 -0.3633 0.8897 -0.5141 27 1 -0.3633 -0.8901 -0.5134 28 1 1.6889 2.1433 -0.0004 29 1 4.1743 2.0638 0.0051 30 1 6.0664 -1.6483 -0.0691 31 1 4.7672 -4.5658 1.4103 32 1 5.9337 -6.7212 1.6065 33 1 8.0669 -7.0848 0.4469 34 1 9.1602 -8.4857 -1.6785 35 1 7.8580 -3.0874 -1.1456 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001587609859.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:06 Heat of formation + Delta-G solvation = 37.736110 kcal Electronic energy + Delta-G solvation = -20432.192113 eV Core-core repulsion = 17202.211178 eV Total energy + Delta-G solvation = -3229.980935 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.40998 -39.39762 -37.13359 -34.93145 -34.32096 -33.07994 -32.75092 -29.81919 -29.10779 -28.19265 -25.52390 -25.14977 -23.35791 -21.77373 -20.93015 -19.87773 -18.05025 -17.81417 -17.30018 -16.09399 -15.71134 -15.49032 -15.13382 -14.93677 -14.63843 -14.15457 -13.86926 -13.51678 -13.29979 -12.91122 -12.83675 -12.65814 -12.21522 -11.68244 -11.39692 -11.20501 -11.13658 -10.88386 -10.85045 -10.50898 -10.24074 -9.82263 -9.62297 -9.55219 -9.49033 -9.20370 -8.94524 -7.45016 -6.92667 -6.70124 -4.34083 0.28857 0.81694 2.51333 2.84555 2.95356 3.09011 3.11447 3.15860 3.29825 3.76041 3.82936 3.95783 4.11408 4.27977 4.64556 4.67913 4.72794 5.03909 5.13395 5.19938 5.42829 5.59965 5.70308 6.03985 6.30480 6.54715 6.70430 6.74122 6.94737 7.00135 7.05708 7.26852 7.57350 7.59617 7.77388 8.00329 8.05093 8.15249 8.31301 8.53846 8.68484 8.91275 8.98312 10.23363 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.037925 B = 0.003267 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.124024 B = 8567.255045 C = 9034.534082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.171 3.829 3 C -0.217 4.217 4 C 0.148 3.852 5 N -0.500 5.500 6 C 0.299 3.701 7 C 0.572 3.428 8 O -0.485 6.485 9 N -0.641 5.641 10 C 0.150 3.850 11 C -0.226 4.226 12 C -0.094 4.094 13 C -0.165 4.165 14 C 0.122 3.878 15 C -0.465 4.465 16 H 0.077 0.923 17 C 0.076 3.924 18 N -0.794 5.794 19 Si 0.909 3.091 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.238 4.238 24 N -0.470 5.470 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.152 0.848 29 H 0.176 0.824 30 H 0.411 0.589 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.120 0.880 34 H 0.281 0.719 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.126 16.190 2.397 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.024 3.976 3 C -0.239 4.239 4 C -0.018 4.018 5 N -0.217 5.217 6 C 0.028 3.972 7 C 0.353 3.647 8 O -0.355 6.355 9 N -0.286 5.286 10 C 0.059 3.941 11 C -0.247 4.247 12 C -0.113 4.113 13 C -0.185 4.185 14 C 0.119 3.881 15 C -0.495 4.495 16 H 0.095 0.905 17 C -0.141 4.141 18 N -0.419 5.419 19 Si 0.734 3.266 20 H -0.188 1.188 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.260 4.260 24 N -0.186 5.186 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.170 0.830 29 H 0.193 0.807 30 H 0.247 0.753 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.138 0.862 34 H 0.092 0.908 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.157 14.280 2.345 17.680 hybrid contribution 0.528 1.201 -0.365 1.362 sum -9.629 15.481 1.980 18.339 Atomic orbital electron populations 1.20813 0.87292 1.04360 1.03947 1.21905 0.98001 0.87827 0.89916 1.22985 0.96674 1.00618 1.03607 1.23300 0.92201 0.96049 0.90234 1.68349 1.41635 0.98848 1.12872 1.23088 0.87412 0.93065 0.93593 1.17249 0.82568 0.85779 0.79096 1.90837 1.66577 1.31657 1.46472 1.43194 1.04949 1.10007 1.70416 1.17425 0.93375 0.84714 0.98580 1.20315 1.02532 0.94883 1.06980 1.20575 0.95856 0.95315 0.99559 1.21395 0.96645 1.00849 0.99611 1.17360 0.91737 0.89854 0.89123 1.19484 1.03578 0.92909 1.33485 0.90450 1.25890 0.99130 0.95849 0.93276 1.69822 1.35018 1.02003 1.35085 0.86361 0.82644 0.77841 0.79800 1.18845 1.20387 1.19077 1.20716 0.97295 1.00500 1.07471 1.68130 1.08650 1.30360 1.11422 0.89419 0.89917 0.89506 0.83037 0.80708 0.75310 0.88152 0.88894 0.86214 0.90817 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.22 36.01 0.37 -0.38 16 2 C 0.17 1.86 6.82 -82.26 -0.56 1.29 16 3 C -0.22 -1.75 9.87 -39.16 -0.39 -2.14 16 4 C 0.15 1.38 11.30 -17.23 -0.19 1.18 16 5 N -0.50 -6.81 9.58 -11.13 -0.11 -6.92 16 6 C 0.30 4.98 7.59 -157.07 -1.19 3.79 16 7 C 0.57 11.58 7.58 -12.04 -0.09 11.49 16 8 O -0.49 -11.52 14.60 5.38 0.08 -11.44 16 9 N -0.64 -12.74 5.31 -10.58 -0.06 -12.80 16 10 C 0.15 3.56 6.24 -83.79 -0.52 3.04 16 11 C -0.23 -5.57 8.66 -39.09 -0.34 -5.91 16 12 C -0.09 -2.34 10.02 -39.69 -0.40 -2.73 16 13 C -0.17 -4.40 8.69 -38.83 -0.34 -4.74 16 14 C 0.12 3.30 5.57 -106.85 -0.59 2.70 16 15 C -0.46 -12.35 9.05 -37.74 -0.34 -12.69 16 16 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 17 C 0.08 1.93 5.16 -17.35 -0.09 1.84 16 18 N -0.79 -20.84 10.94 55.55 0.61 -20.23 16 19 Si 0.91 18.74 29.59 -169.99 -5.03 13.71 16 20 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 23 C -0.24 -5.91 9.70 -38.68 -0.38 -6.28 16 24 N -0.47 -7.37 10.07 -7.38 -0.07 -7.45 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.15 0.60 8.06 -52.48 -0.42 0.18 16 29 H 0.18 0.91 8.06 -52.49 -0.42 0.48 16 30 H 0.41 6.97 8.13 -40.82 -0.33 6.64 16 31 H 0.10 2.45 6.48 -52.48 -0.34 2.11 16 32 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 33 H 0.12 3.25 6.17 -52.49 -0.32 2.93 16 34 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 35 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 311.47 15.07 4.69 4.69 Total: -1.00 -32.72 311.47 -8.45 -41.17 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -3.50 Total: 8.81 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -5.06 Total: -9.55 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.37 Total: -47.39 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.44 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.72 -8.45 -41.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001587609859.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.906 kcal (2) G-P(sol) polarization free energy of solvation -32.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds