Wall clock time and date at job start Fri Apr 10 2020 15:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38829 * 120.41700 * 2 1 4 4 C 1.38777 * 118.51293 * 179.97438 * 3 2 1 5 5 N 1.32118 * 119.16368 * 359.97438 * 4 3 2 6 6 C 1.32464 * 120.77387 * 0.02562 * 5 4 3 7 7 C 1.48484 * 119.18984 * 180.02562 * 6 5 4 8 8 O 1.21487 * 119.99946 * 179.97438 * 7 6 5 9 9 N 1.34771 * 120.00319 * 0.02562 * 7 6 5 10 10 C 1.39824 * 120.00401 * 174.89134 * 9 7 6 11 11 C 1.39324 * 119.95051 * 325.51796 * 10 9 7 12 12 C 1.38474 * 120.42694 * 179.72301 * 11 10 9 13 13 C 1.37698 * 120.32404 * 0.54290 * 12 11 10 14 14 C 1.40739 * 119.88720 * 359.73212 * 13 12 11 15 15 C 1.41418 * 120.20328 * 180.02562 * 14 13 12 16 16 H 1.07993 * 119.99797 * 205.16990 * 15 14 13 17 17 C 1.39938 * 119.99776 * 25.17986 * 15 14 13 18 18 N 1.30821 * 120.00289 * 16.79555 * 17 15 14 19 19 Si 1.86804 * 119.99391 * 196.79467 * 17 15 14 20 20 H 1.48503 * 109.46855 * 59.99937 * 19 17 15 21 21 H 1.48499 * 109.46600 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47079 * 299.99622 * 19 17 15 23 23 C 1.38277 * 119.95416 * 145.78431 * 10 9 7 24 24 N 1.32095 * 120.42024 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.46615 * 270.01937 * 1 2 3 26 26 H 1.08995 * 109.47262 * 30.02129 * 1 2 3 27 27 H 1.08993 * 109.47231 * 150.02334 * 1 2 3 28 28 H 1.08004 * 120.74088 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.41558 * 180.27687 * 4 3 2 30 30 H 0.97002 * 119.99732 * 354.88791 * 9 7 6 31 31 H 1.08004 * 119.78469 * 359.97438 * 11 10 9 32 32 H 1.07999 * 119.84036 * 180.25470 * 12 11 10 33 33 H 1.07999 * 120.05025 * 179.74949 * 13 12 11 34 34 H 0.97000 * 119.99814 * 180.02562 * 18 17 15 35 35 H 1.08002 * 120.16035 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1972 0.0000 4 6 3.5969 1.1511 0.0005 5 7 4.2020 -0.0234 0.0016 6 6 3.5007 -1.1471 0.0015 7 6 4.2170 -2.4478 0.0033 8 8 3.5885 -3.4874 0.0038 9 7 5.5644 -2.4750 0.0054 10 6 6.2389 -3.6949 0.1148 11 6 5.7030 -4.7187 0.8932 12 6 6.3598 -5.9327 1.0039 13 6 7.5564 -6.1376 0.3542 14 6 8.1129 -5.1107 -0.4310 15 6 9.3412 -5.3140 -1.1016 16 1 9.9656 -4.4694 -1.3526 17 6 9.7475 -6.6096 -1.4401 18 7 8.8785 -7.5875 -1.4442 19 14 11.5306 -6.9426 -1.8862 20 1 12.4033 -6.5807 -0.7405 21 1 11.7010 -8.3837 -2.2018 22 1 11.9050 -6.1284 -3.0702 23 6 7.4396 -3.8816 -0.5451 24 7 2.1758 -1.1391 0.0005 25 1 -0.3632 0.0003 1.0277 26 1 -0.3633 0.8897 -0.5141 27 1 -0.3633 -0.8901 -0.5134 28 1 1.6889 2.1433 -0.0004 29 1 4.1743 2.0638 0.0051 30 1 6.0664 -1.6483 -0.0691 31 1 4.7672 -4.5658 1.4103 32 1 5.9337 -6.7212 1.6065 33 1 8.0669 -7.0848 0.4469 34 1 9.1602 -8.4857 -1.6785 35 1 7.8580 -3.0874 -1.1456 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001587609859.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:04 Heat of formation + Delta-G solvation = 16.096553 kcal Electronic energy + Delta-G solvation = -20433.130475 eV Core-core repulsion = 17202.211178 eV Total energy + Delta-G solvation = -3230.919297 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.42467 -40.97804 -38.99528 -36.35242 -35.62945 -34.83434 -33.72844 -31.80655 -30.42981 -29.36118 -27.24726 -26.63454 -24.16653 -23.37650 -22.83348 -21.55919 -19.60117 -19.09019 -18.70016 -17.41062 -16.99956 -16.85787 -16.74044 -16.39785 -16.12015 -15.60623 -15.13957 -14.89157 -14.63618 -14.21924 -14.11165 -13.86838 -13.57579 -13.18794 -13.01986 -12.94633 -12.71647 -12.47326 -12.19079 -11.96585 -11.78091 -11.50127 -11.28692 -11.08182 -10.79483 -10.61464 -10.44369 -9.45321 -8.84222 -8.61477 -6.36978 -0.70339 0.02600 0.82264 0.95376 1.40759 1.50513 1.53571 1.61760 1.70677 2.22871 2.67765 2.76950 2.81871 3.12245 3.50667 3.69130 3.77861 4.01793 4.28380 4.39559 4.57219 4.60694 4.70486 4.76520 4.94166 4.98465 5.04823 5.06990 5.15427 5.30875 5.35804 5.67117 5.77376 5.89000 6.03896 6.06652 6.20182 6.44078 6.64799 6.83142 6.91081 6.93983 7.07537 8.34511 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.037925 B = 0.003267 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.124024 B = 8567.255045 C = 9034.534082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.148 3.852 3 C -0.179 4.179 4 C 0.140 3.860 5 N -0.510 5.510 6 C 0.268 3.732 7 C 0.571 3.429 8 O -0.533 6.533 9 N -0.634 5.634 10 C 0.158 3.842 11 C -0.240 4.240 12 C -0.094 4.094 13 C -0.191 4.191 14 C 0.097 3.903 15 C -0.495 4.495 16 H 0.083 0.917 17 C 0.034 3.966 18 N -0.826 5.826 19 Si 0.987 3.013 20 H -0.258 1.258 21 H -0.270 1.270 22 H -0.258 1.258 23 C -0.249 4.249 24 N -0.508 5.508 25 H 0.100 0.900 26 H 0.120 0.880 27 H 0.069 0.931 28 H 0.207 0.793 29 H 0.223 0.777 30 H 0.424 0.576 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.289 0.711 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.371 19.422 2.045 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.002 3.998 3 C -0.200 4.200 4 C -0.024 4.024 5 N -0.229 5.229 6 C -0.002 4.002 7 C 0.355 3.645 8 O -0.406 6.406 9 N -0.280 5.280 10 C 0.066 3.934 11 C -0.261 4.261 12 C -0.113 4.113 13 C -0.211 4.211 14 C 0.094 3.906 15 C -0.524 4.524 16 H 0.101 0.899 17 C -0.181 4.181 18 N -0.452 5.452 19 Si 0.808 3.192 20 H -0.182 1.182 21 H -0.194 1.194 22 H -0.182 1.182 23 C -0.271 4.271 24 N -0.226 5.226 25 H 0.118 0.882 26 H 0.139 0.861 27 H 0.088 0.912 28 H 0.224 0.776 29 H 0.239 0.761 30 H 0.263 0.737 31 H 0.117 0.883 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.422 17.570 1.998 20.526 hybrid contribution 0.422 0.391 -0.250 0.627 sum -9.999 17.960 1.748 20.631 Atomic orbital electron populations 1.20956 0.84751 1.05380 1.05002 1.22673 0.99696 0.87614 0.89769 1.23578 0.96186 1.01599 0.98687 1.24192 0.93536 0.95772 0.88915 1.68272 1.42077 0.99408 1.13108 1.22092 0.87852 0.92139 0.98068 1.17853 0.82232 0.87160 0.77253 1.90787 1.67420 1.33973 1.48444 1.43077 1.05286 1.09265 1.70356 1.17473 0.92992 0.85843 0.97134 1.20426 1.02588 0.95375 1.07722 1.20795 0.95319 0.96001 0.99220 1.21351 0.97703 1.00726 1.01272 1.17743 0.92541 0.90773 0.89561 1.19809 1.04032 0.94124 1.34456 0.89880 1.26836 1.03738 0.95019 0.92541 1.69889 1.37303 1.02689 1.35275 0.85179 0.76302 0.78069 0.79695 1.18226 1.19403 1.18240 1.20868 0.97761 1.00440 1.07996 1.68004 1.08497 1.33468 1.12589 0.88210 0.86135 0.91228 0.77608 0.76105 0.73681 0.88307 0.86965 0.87397 0.90033 0.87019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 10.22 71.24 0.73 -0.43 16 2 C 0.15 2.85 6.82 42.66 0.29 3.15 16 3 C -0.18 -2.03 9.87 22.54 0.22 -1.81 16 4 C 0.14 2.05 11.30 84.78 0.96 3.01 16 5 N -0.51 -13.14 9.58 -189.14 -1.81 -14.96 16 6 C 0.27 8.99 7.59 137.66 1.05 10.04 16 7 C 0.57 24.00 7.58 86.98 0.66 24.66 16 8 O -0.53 -26.64 14.60 -3.67 -0.05 -26.69 16 9 N -0.63 -25.90 5.31 -305.70 -1.62 -27.52 16 10 C 0.16 7.74 6.24 38.14 0.24 7.97 16 11 C -0.24 -12.30 8.66 22.59 0.20 -12.10 16 12 C -0.09 -4.88 10.02 22.20 0.22 -4.66 16 13 C -0.19 -10.59 8.69 22.75 0.20 -10.39 16 14 C 0.10 5.40 5.57 -21.31 -0.12 5.28 16 15 C -0.50 -26.88 9.05 23.47 0.21 -26.67 16 16 H 0.08 4.25 7.90 -2.91 -0.02 4.23 16 17 C 0.03 1.72 5.16 85.26 0.44 2.16 16 18 N -0.83 -44.26 10.94 21.82 0.24 -44.02 16 19 Si 0.99 38.28 29.59 68.60 2.03 40.31 16 20 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 21 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 22 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 23 C -0.25 -12.71 9.70 22.86 0.22 -12.49 16 24 N -0.51 -15.91 10.07 -177.27 -1.78 -17.70 16 25 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.12 0.41 8.10 -2.39 -0.02 0.39 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.21 0.08 8.06 -2.91 -0.02 0.06 16 29 H 0.22 1.04 8.06 -2.91 -0.02 1.01 16 30 H 0.42 14.59 8.13 -92.71 -0.75 13.83 16 31 H 0.10 5.05 6.48 -2.91 -0.02 5.03 16 32 H 0.11 5.18 8.06 -2.91 -0.02 5.15 16 33 H 0.11 6.14 6.17 -2.91 -0.02 6.12 16 34 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 35 H 0.11 5.21 8.06 -2.91 -0.02 5.19 16 Total: -1.00 -76.77 311.47 2.89 -73.87 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.39 Total: 28.98 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 5.51 Total: -12.27 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -4.98 Total: -104.20 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.05 Total: -26.69 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Total: -76.77 2.89 -73.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001587609859.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.969 kcal (2) G-P(sol) polarization free energy of solvation -76.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds