Wall clock time and date at job start Fri Apr 10 2020 14:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47526 * 2 1 4 4 H 1.08997 * 109.47209 * 179.90374 * 3 2 1 5 5 C 1.50700 * 109.47010 * 299.90508 * 3 2 1 6 6 H 1.07997 * 120.00438 * 120.00033 * 5 3 2 7 7 C 1.37883 * 119.99847 * 299.99625 * 5 3 2 8 8 N 1.31512 * 119.99853 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00116 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47128 * 59.99932 * 9 7 5 11 11 H 1.48501 * 109.47349 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47329 * 300.00232 * 9 7 5 13 13 N 1.46904 * 109.46743 * 59.89900 * 3 2 1 14 14 C 1.46903 * 110.99387 * 85.97940 * 13 3 2 15 15 C 1.50704 * 109.46626 * 175.52851 * 14 13 3 16 16 C 1.38172 * 120.01784 * 259.72191 * 15 14 13 17 17 C 1.38342 * 120.04278 * 179.79420 * 16 15 14 18 18 Cl 1.73593 * 119.95988 * 180.20897 * 17 16 15 19 19 C 1.38390 * 120.08361 * 0.46141 * 17 16 15 20 20 C 1.38124 * 120.04275 * 359.78892 * 19 17 16 21 21 C 1.38692 * 120.02436 * 79.99637 * 15 14 13 22 22 O 1.35925 * 120.04615 * 359.97438 * 21 15 14 23 23 C 1.42896 * 117.00345 * 179.97438 * 22 21 15 24 24 H 1.09003 * 109.46587 * 55.59526 * 1 2 3 25 25 H 1.08992 * 109.47396 * 295.59730 * 1 2 3 26 26 H 1.08998 * 109.47475 * 175.59191 * 1 2 3 27 27 H 1.09007 * 109.47019 * 120.00130 * 2 1 3 28 28 H 1.09007 * 109.47162 * 239.99485 * 2 1 3 29 29 H 0.97005 * 119.99871 * 179.97438 * 8 7 5 30 30 H 1.00901 * 110.99463 * 209.92926 * 13 3 2 31 31 H 1.08994 * 109.46864 * 295.52016 * 14 13 3 32 32 H 1.08994 * 109.47486 * 55.52703 * 14 13 3 33 33 H 1.08004 * 119.98090 * 0.02562 * 16 15 14 34 34 H 1.08003 * 119.97939 * 179.77168 * 19 17 16 35 35 H 1.07998 * 120.02345 * 179.97438 * 20 19 17 36 36 H 1.09000 * 109.46776 * 179.97438 * 23 22 21 37 37 H 1.08993 * 109.47106 * 299.99978 * 23 22 21 38 38 H 1.09002 * 109.46824 * 59.99792 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1301 1.4424 0.0017 5 6 1.5397 2.1522 -1.2316 6 1 0.9187 3.0304 -1.1341 7 6 1.8748 1.6804 -2.4832 8 7 2.6307 0.6108 -2.6020 9 14 1.2552 2.5605 -4.0099 10 1 1.7508 3.9604 -4.0096 11 1 1.7516 1.8594 -5.2212 12 1 -0.2298 2.5612 -4.0125 13 7 1.5484 2.1356 1.1983 14 6 2.4428 1.9092 2.3415 15 6 1.9683 2.7214 3.5189 16 6 2.5862 3.9182 3.8272 17 6 2.1483 4.6662 4.9054 18 17 2.9226 6.1722 5.2874 19 6 1.0970 4.2129 5.6829 20 6 0.4801 3.0145 5.3811 21 6 0.9149 2.2652 4.2972 22 8 0.3090 1.0857 3.9986 23 6 -0.7687 0.6777 4.8436 24 1 -0.3632 0.5807 -0.8479 25 1 -0.3634 0.4440 0.9267 26 1 -0.3634 -1.0246 -0.0790 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 2.8661 0.2787 -3.4825 30 1 1.4294 3.1220 1.0220 31 1 2.4365 0.8513 2.6037 32 1 3.4557 2.2118 2.0759 33 1 3.4092 4.2718 3.2237 34 1 0.7589 4.7965 6.5265 35 1 -0.3399 2.6609 5.9883 36 1 -1.1622 -0.2772 4.4951 37 1 -0.4080 0.5709 5.8665 38 1 -1.5584 1.4285 4.8133 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183969.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:46 Heat of formation + Delta-G solvation = -25.925330 kcal Electronic energy + Delta-G solvation = -20201.486758 eV Core-core repulsion = 17069.852750 eV Total energy + Delta-G solvation = -3131.634008 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.19996 -37.62422 -36.46777 -35.90082 -33.19758 -31.37070 -30.09712 -29.66135 -27.28562 -26.48019 -24.34240 -23.01344 -22.16600 -21.22320 -18.95360 -17.98244 -16.67015 -16.32837 -15.83142 -15.65275 -14.85325 -14.52834 -14.15879 -13.76386 -13.65717 -13.39956 -13.03919 -12.78520 -12.44155 -12.14266 -11.86667 -11.82860 -11.67440 -11.26451 -11.16209 -10.91047 -10.82995 -10.61789 -10.54087 -10.32959 -10.00591 -9.66007 -9.31414 -8.95290 -8.71606 -8.42223 -7.97713 -7.15284 -5.98079 -4.03376 1.24444 1.29277 2.19628 3.33161 3.37772 3.38828 3.40592 3.64115 4.43521 4.68743 4.75463 5.04029 5.15653 5.17864 5.27781 5.32894 5.50618 5.53001 5.61540 5.83677 5.91544 6.12844 6.23012 6.30509 6.49764 6.63353 6.70161 6.77665 6.93836 7.33143 7.37169 7.46534 7.56336 7.81481 7.83683 7.90089 8.32417 8.44639 8.71810 9.05987 9.61082 11.07629 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.017357 B = 0.004686 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.790719 B = 5973.549510 C = 7101.602867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.100 4.100 3 C 0.217 3.783 4 H 0.000 1.000 5 C -0.511 4.511 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.674 5.674 14 C 0.107 3.893 15 C -0.091 4.091 16 C -0.069 4.069 17 C -0.074 4.074 18 Cl -0.082 7.082 19 C -0.077 4.077 20 C -0.205 4.205 21 C 0.157 3.843 22 O -0.288 6.288 23 C 0.026 3.974 24 H 0.054 0.946 25 H 0.044 0.956 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.084 0.916 29 H 0.260 0.740 30 H 0.329 0.671 31 H 0.077 0.923 32 H 0.029 0.971 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.100 0.900 37 H 0.050 0.950 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.244 3.866 17.022 17.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.139 4.139 3 C 0.109 3.891 4 H 0.017 0.983 5 C -0.550 4.550 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.304 5.304 14 C -0.022 4.022 15 C -0.093 4.093 16 C -0.088 4.088 17 C -0.101 4.101 18 Cl -0.053 7.053 19 C -0.096 4.096 20 C -0.224 4.224 21 C 0.110 3.890 22 O -0.200 6.200 23 C -0.070 4.070 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.030 0.970 27 H 0.028 0.972 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.146 0.854 31 H 0.095 0.905 32 H 0.047 0.953 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.118 0.882 37 H 0.069 0.931 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.480 3.202 16.905 17.554 hybrid contribution 0.300 1.211 -0.809 1.487 sum -3.180 4.413 16.096 16.991 Atomic orbital electron populations 1.21430 0.97555 0.97175 1.01380 1.21399 0.95036 0.98153 0.99279 1.19151 0.92885 0.91566 0.85461 0.98253 1.21149 1.31594 1.11918 0.90347 0.92421 1.24871 0.95069 0.95002 0.98835 1.69879 1.36701 1.22701 1.23482 0.86652 0.79245 0.79651 0.82382 1.20416 1.21380 1.20256 1.60767 1.48314 1.15713 1.05648 1.20741 0.93982 0.98611 0.88891 1.19415 0.95812 0.95758 0.98272 1.20847 0.99684 0.92828 0.95428 1.20667 0.99234 0.90240 0.99953 1.98343 1.80747 1.32150 1.94060 1.20700 0.94350 0.95656 0.98916 1.21141 1.04081 0.97115 1.00105 1.18895 0.91937 0.85768 0.92406 1.86304 1.46579 1.34282 1.52829 1.23068 0.88558 1.01159 0.94170 0.92742 0.93664 0.97044 0.97164 0.89723 0.92958 0.85416 0.90483 0.95345 0.84511 0.85209 0.84878 0.88176 0.93118 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 9.52 37.16 0.35 -2.34 16 2 C -0.10 -2.45 5.59 -26.73 -0.15 -2.60 16 3 C 0.22 5.38 2.30 -68.86 -0.16 5.22 16 4 H 0.00 0.00 7.71 -51.93 -0.40 -0.40 16 5 C -0.51 -13.71 7.26 -34.44 -0.25 -13.96 16 6 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -25.13 11.32 55.43 0.63 -24.51 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.67 -14.23 5.64 -109.22 -0.62 -14.85 16 14 C 0.11 1.96 5.33 -4.97 -0.03 1.93 16 15 C -0.09 -1.44 5.36 -104.48 -0.56 -2.00 16 16 C -0.07 -0.98 9.45 -39.57 -0.37 -1.35 16 17 C -0.07 -0.96 6.32 -39.49 -0.25 -1.21 16 18 Cl -0.08 -0.97 28.95 -51.86 -1.50 -2.47 16 19 C -0.08 -0.90 9.82 -39.57 -0.39 -1.29 16 20 C -0.21 -2.46 9.04 -39.43 -0.36 -2.81 16 21 C 0.16 2.30 6.66 -39.22 -0.26 2.04 16 22 O -0.29 -4.33 9.73 -19.50 -0.19 -4.52 16 23 C 0.03 0.26 9.81 101.05 0.99 1.25 16 24 H 0.05 1.34 7.07 -51.93 -0.37 0.97 16 25 H 0.04 0.99 7.74 -51.93 -0.40 0.59 16 26 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.01 0.23 7.61 -51.92 -0.39 -0.17 16 28 H 0.08 2.29 6.07 -51.93 -0.32 1.98 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.33 6.95 8.13 -39.29 -0.32 6.63 16 31 H 0.08 1.48 7.32 -51.93 -0.38 1.10 16 32 H 0.03 0.52 7.80 -51.93 -0.41 0.12 16 33 H 0.14 1.85 8.03 -52.48 -0.42 1.43 16 34 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 35 H 0.13 1.23 6.30 -52.49 -0.33 0.90 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 38 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 LS Contribution 327.63 15.07 4.94 4.94 Total: -1.00 -28.61 327.63 -8.62 -37.23 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.33 Total: 3.45 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -1.52 Total: -15.46 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.01 Total: -39.36 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.19 Total: -4.52 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.61 -8.62 -37.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183969.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.308 kcal (2) G-P(sol) polarization free energy of solvation -28.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds