Wall clock time and date at job start Fri Apr 10 2020 14:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47526 * 2 1 4 4 H 1.08997 * 109.47209 * 179.90374 * 3 2 1 5 5 C 1.50700 * 109.47010 * 299.90508 * 3 2 1 6 6 H 1.07997 * 120.00438 * 120.00033 * 5 3 2 7 7 C 1.37883 * 119.99847 * 299.99625 * 5 3 2 8 8 N 1.31512 * 119.99853 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00116 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47128 * 59.99932 * 9 7 5 11 11 H 1.48501 * 109.47349 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47329 * 300.00232 * 9 7 5 13 13 N 1.46904 * 109.46743 * 59.89900 * 3 2 1 14 14 C 1.46903 * 110.99387 * 85.97940 * 13 3 2 15 15 C 1.50704 * 109.46626 * 175.52851 * 14 13 3 16 16 C 1.38172 * 120.01784 * 259.72191 * 15 14 13 17 17 C 1.38342 * 120.04278 * 179.79420 * 16 15 14 18 18 Cl 1.73593 * 119.95988 * 180.20897 * 17 16 15 19 19 C 1.38390 * 120.08361 * 0.46141 * 17 16 15 20 20 C 1.38124 * 120.04275 * 359.78892 * 19 17 16 21 21 C 1.38692 * 120.02436 * 79.99637 * 15 14 13 22 22 O 1.35925 * 120.04615 * 359.97438 * 21 15 14 23 23 C 1.42896 * 117.00345 * 179.97438 * 22 21 15 24 24 H 1.09003 * 109.46587 * 55.59526 * 1 2 3 25 25 H 1.08992 * 109.47396 * 295.59730 * 1 2 3 26 26 H 1.08998 * 109.47475 * 175.59191 * 1 2 3 27 27 H 1.09007 * 109.47019 * 120.00130 * 2 1 3 28 28 H 1.09007 * 109.47162 * 239.99485 * 2 1 3 29 29 H 0.97005 * 119.99871 * 179.97438 * 8 7 5 30 30 H 1.00901 * 110.99463 * 209.92926 * 13 3 2 31 31 H 1.08994 * 109.46864 * 295.52016 * 14 13 3 32 32 H 1.08994 * 109.47486 * 55.52703 * 14 13 3 33 33 H 1.08004 * 119.98090 * 0.02562 * 16 15 14 34 34 H 1.08003 * 119.97939 * 179.77168 * 19 17 16 35 35 H 1.07998 * 120.02345 * 179.97438 * 20 19 17 36 36 H 1.09000 * 109.46776 * 179.97438 * 23 22 21 37 37 H 1.08993 * 109.47106 * 299.99978 * 23 22 21 38 38 H 1.09002 * 109.46824 * 59.99792 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1301 1.4424 0.0017 5 6 1.5397 2.1522 -1.2316 6 1 0.9187 3.0304 -1.1341 7 6 1.8748 1.6804 -2.4832 8 7 2.6307 0.6108 -2.6020 9 14 1.2552 2.5605 -4.0099 10 1 1.7508 3.9604 -4.0096 11 1 1.7516 1.8594 -5.2212 12 1 -0.2298 2.5612 -4.0125 13 7 1.5484 2.1356 1.1983 14 6 2.4428 1.9092 2.3415 15 6 1.9683 2.7214 3.5189 16 6 2.5862 3.9182 3.8272 17 6 2.1483 4.6662 4.9054 18 17 2.9226 6.1722 5.2874 19 6 1.0970 4.2129 5.6829 20 6 0.4801 3.0145 5.3811 21 6 0.9149 2.2652 4.2972 22 8 0.3090 1.0857 3.9986 23 6 -0.7687 0.6777 4.8436 24 1 -0.3632 0.5807 -0.8479 25 1 -0.3634 0.4440 0.9267 26 1 -0.3634 -1.0246 -0.0790 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 2.8661 0.2787 -3.4825 30 1 1.4294 3.1220 1.0220 31 1 2.4365 0.8513 2.6037 32 1 3.4557 2.2118 2.0759 33 1 3.4092 4.2718 3.2237 34 1 0.7589 4.7965 6.5265 35 1 -0.3399 2.6609 5.9883 36 1 -1.1622 -0.2772 4.4951 37 1 -0.4080 0.5709 5.8665 38 1 -1.5584 1.4285 4.8133 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183969.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:45 Heat of formation + Delta-G solvation = -42.313071 kcal Electronic energy + Delta-G solvation = -20202.197384 eV Core-core repulsion = 17069.852750 eV Total energy + Delta-G solvation = -3132.344634 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.23741 -38.66041 -38.05326 -37.08096 -34.86323 -33.14103 -31.51415 -30.82400 -28.48510 -27.96578 -25.95031 -24.90682 -23.16476 -22.43161 -20.89595 -19.03752 -18.36106 -17.49687 -17.08497 -16.80210 -16.55883 -15.79601 -15.54901 -15.25701 -15.14445 -14.74860 -14.31590 -14.12536 -13.98189 -13.55504 -13.49826 -13.00340 -12.79046 -12.77118 -12.61842 -12.58178 -12.38613 -12.12387 -11.96813 -11.70349 -11.54797 -11.45936 -11.24313 -10.78596 -10.50683 -9.99489 -9.03805 -8.92032 -8.07056 -6.19335 0.21374 0.26461 1.21175 1.43767 1.44969 1.52230 2.43875 2.46695 2.60458 3.21387 3.64309 3.76750 3.90572 4.14581 4.19467 4.43246 4.48051 4.49340 4.53988 4.66509 4.76499 4.81355 4.83870 4.93135 4.99091 5.13234 5.21660 5.29565 5.35468 5.45566 5.59261 5.64976 5.74257 5.85418 5.92706 6.31004 6.48345 6.54835 6.81986 7.05136 7.49130 8.97699 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.017357 B = 0.004686 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.790719 B = 5973.549510 C = 7101.602867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.095 4.095 3 C 0.223 3.777 4 H -0.037 1.037 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 0.954 3.046 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.666 5.666 14 C 0.116 3.884 15 C -0.116 4.116 16 C -0.074 4.074 17 C -0.081 4.081 18 Cl -0.073 7.073 19 C -0.067 4.067 20 C -0.196 4.196 21 C 0.147 3.853 22 O -0.320 6.320 23 C 0.017 3.983 24 H 0.033 0.967 25 H 0.052 0.948 26 H 0.030 0.970 27 H 0.016 0.984 28 H 0.057 0.943 29 H 0.260 0.740 30 H 0.328 0.672 31 H 0.064 0.936 32 H 0.020 0.980 33 H 0.134 0.866 34 H 0.161 0.839 35 H 0.166 0.834 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.861 4.824 18.662 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.133 4.133 3 C 0.115 3.885 4 H -0.019 1.019 5 C -0.561 4.561 6 H 0.074 0.926 7 C -0.181 4.181 8 N -0.556 5.556 9 Si 0.780 3.220 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.297 5.297 14 C -0.013 4.013 15 C -0.118 4.118 16 C -0.093 4.093 17 C -0.108 4.108 18 Cl -0.044 7.044 19 C -0.085 4.085 20 C -0.215 4.215 21 C 0.100 3.900 22 O -0.233 6.233 23 C -0.078 4.078 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.145 0.855 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.152 0.848 34 H 0.178 0.822 35 H 0.183 0.817 36 H 0.126 0.874 37 H 0.091 0.909 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.104 4.168 18.568 19.703 hybrid contribution 0.809 0.916 -1.207 1.718 sum -4.295 5.084 17.361 18.593 Atomic orbital electron populations 1.21260 0.95933 0.98099 1.00742 1.21268 0.96326 0.97594 0.98159 1.18942 0.90654 0.92253 0.86695 1.01919 1.21397 1.31449 1.11949 0.91330 0.92622 1.25607 0.95222 0.95640 1.01629 1.70017 1.37653 1.23897 1.23993 0.85679 0.78795 0.78651 0.78890 1.19841 1.21132 1.19721 1.60675 1.48779 1.15261 1.04944 1.20568 0.93175 0.98525 0.89049 1.19174 0.97757 0.96572 0.98274 1.20833 0.99709 0.92662 0.96112 1.20760 0.99743 0.90532 0.99782 1.98347 1.80708 1.31449 1.93905 1.21087 0.93053 0.95458 0.98939 1.21450 1.04355 0.96527 0.99126 1.19038 0.91730 0.86169 0.93044 1.86252 1.47930 1.34513 1.54582 1.23358 0.87769 1.01845 0.94803 0.94765 0.92919 0.95074 0.96519 0.92491 0.93035 0.85535 0.91754 0.96155 0.84802 0.82188 0.81685 0.87404 0.90887 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.67 9.52 71.98 0.69 -3.98 16 2 C -0.09 -4.74 5.59 30.59 0.17 -4.57 16 3 C 0.22 11.43 2.30 44.17 0.10 11.54 16 4 H -0.04 -2.11 7.71 -2.39 -0.02 -2.13 16 5 C -0.52 -28.53 7.26 25.60 0.19 -28.35 16 6 H 0.06 3.00 7.60 -2.91 -0.02 2.98 16 7 C 0.02 1.01 5.30 84.66 0.45 1.45 16 8 N -0.92 -52.95 11.32 21.45 0.24 -52.71 16 9 Si 0.95 43.72 29.54 68.60 2.03 45.75 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 13 N -0.67 -28.83 5.64 -499.46 -2.82 -31.65 16 14 C 0.12 4.39 5.33 85.56 0.46 4.85 16 15 C -0.12 -3.66 5.36 -19.77 -0.11 -3.76 16 16 C -0.07 -2.07 9.45 22.28 0.21 -1.86 16 17 C -0.08 -1.96 6.32 22.33 0.14 -1.82 16 18 Cl -0.07 -1.60 28.95 -2.72 -0.08 -1.68 16 19 C -0.07 -1.34 9.82 22.28 0.22 -1.12 16 20 C -0.20 -4.07 9.04 22.36 0.20 -3.87 16 21 C 0.15 4.11 6.66 22.50 0.15 4.26 16 22 O -0.32 -9.22 9.73 -92.70 -0.90 -10.12 16 23 C 0.02 0.29 9.81 113.37 1.11 1.40 16 24 H 0.03 1.66 7.07 -2.39 -0.02 1.64 16 25 H 0.05 2.28 7.74 -2.39 -0.02 2.26 16 26 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.02 0.77 7.61 -2.38 -0.02 0.76 16 28 H 0.06 3.18 6.07 -2.38 -0.01 3.16 16 29 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 30 H 0.33 14.18 8.13 -89.69 -0.73 13.45 16 31 H 0.06 2.56 7.32 -2.39 -0.02 2.55 16 32 H 0.02 0.79 7.80 -2.39 -0.02 0.77 16 33 H 0.13 3.69 8.03 -2.91 -0.02 3.67 16 34 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 35 H 0.17 2.31 6.30 -2.91 -0.02 2.29 16 36 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 0.94 7.66 -2.39 -0.02 0.93 16 38 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 Total: -1.00 -62.14 327.63 2.78 -59.36 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.34 Total: 16.88 kcal Atomic # 6 Polarization: -29.81 SS G_CDS: 3.98 Total: -25.83 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -2.57 Total: -84.36 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.90 Total: -10.12 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.08 Total: -1.68 kcal Total: -62.14 2.78 -59.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183969.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.045 kcal (2) G-P(sol) polarization free energy of solvation -62.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds