Wall clock time and date at job start Fri Apr 10 2020 14:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46865 * 2 1 4 4 H 1.09007 * 109.46646 * 179.71700 * 3 2 1 5 5 C 1.50699 * 109.47040 * 59.72026 * 3 2 1 6 6 H 1.07997 * 119.99839 * 239.99277 * 5 3 2 7 7 C 1.37880 * 120.00187 * 60.00318 * 5 3 2 8 8 N 1.31513 * 119.99864 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99867 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47550 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47506 * 119.99775 * 9 7 5 12 12 H 1.48503 * 109.47108 * 239.99376 * 9 7 5 13 13 N 1.46897 * 109.47367 * 299.71518 * 3 2 1 14 14 C 1.46899 * 111.00170 * 273.75762 * 13 3 2 15 15 C 1.50696 * 109.46888 * 174.45915 * 14 13 3 16 16 C 1.38172 * 120.02295 * 259.72059 * 15 14 13 17 17 C 1.38340 * 120.04415 * 179.72591 * 16 15 14 18 18 Cl 1.73600 * 119.95931 * 180.28144 * 17 16 15 19 19 C 1.38387 * 120.08510 * 0.55041 * 17 16 15 20 20 C 1.38118 * 120.04192 * 359.72488 * 19 17 16 21 21 C 1.38704 * 120.02739 * 79.99924 * 15 14 13 22 22 O 1.35926 * 120.03547 * 0.02562 * 21 15 14 23 23 C 1.42901 * 116.99652 * 180.02562 * 22 21 15 24 24 H 1.08998 * 109.47090 * 62.35435 * 1 2 3 25 25 H 1.09005 * 109.46571 * 182.35005 * 1 2 3 26 26 H 1.08996 * 109.46748 * 302.34391 * 1 2 3 27 27 H 1.08997 * 109.47467 * 239.99859 * 2 1 3 28 28 H 1.09001 * 109.47351 * 119.99875 * 2 1 3 29 29 H 0.97000 * 119.99910 * 180.02562 * 8 7 5 30 30 H 1.00900 * 110.99974 * 149.79591 * 13 3 2 31 31 H 1.09002 * 109.46997 * 294.45472 * 14 13 3 32 32 H 1.08997 * 109.47565 * 54.45563 * 14 13 3 33 33 H 1.08002 * 119.97599 * 0.02562 * 16 15 14 34 34 H 1.08001 * 119.97841 * 179.70275 * 19 17 16 35 35 H 1.08008 * 120.02120 * 179.97438 * 20 19 17 36 36 H 1.09003 * 109.46883 * 300.00044 * 23 22 21 37 37 H 1.08998 * 109.47127 * 60.00170 * 23 22 21 38 38 H 1.09001 * 109.46910 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0051 5 6 1.5319 2.1549 1.2270 6 1 0.9116 3.0328 1.1236 7 6 1.8593 1.6859 2.4816 8 7 2.6145 0.6166 2.6075 9 14 1.2290 2.5686 4.0024 10 1 0.4058 3.7346 3.5925 11 1 0.4005 1.6361 4.8082 12 1 2.3799 3.0370 4.8155 13 7 1.5559 2.1330 -1.2028 14 6 2.4608 1.9094 -2.3383 15 6 1.8649 2.5161 -3.5824 16 6 1.2155 1.7132 -4.5003 17 6 0.6634 2.2705 -5.6398 18 17 -0.1585 1.2606 -6.7880 19 6 0.7702 3.6312 -5.8682 20 6 1.4236 4.4363 -4.9558 21 6 1.9730 3.8802 -3.8097 22 8 2.6169 4.6708 -2.9109 23 6 2.6896 6.0663 -3.2096 24 1 -0.3633 0.4768 -0.9103 25 1 -0.3633 -1.0269 0.0421 26 1 -0.3633 0.5498 0.8682 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.8445 0.2865 3.4901 30 1 1.4314 3.1190 -1.0283 31 1 3.4243 2.3757 -2.1323 32 1 2.5997 0.8386 -2.4869 33 1 1.1346 0.6504 -4.3257 34 1 0.3427 4.0637 -6.7607 35 1 1.5071 5.4982 -5.1347 36 1 3.2147 6.2089 -4.1541 37 1 1.6818 6.4739 -3.2890 38 1 3.2282 6.5806 -2.4136 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183970.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:50 Heat of formation + Delta-G solvation = -43.807046 kcal Electronic energy + Delta-G solvation = -20156.533835 eV Core-core repulsion = 17024.124418 eV Total energy + Delta-G solvation = -3132.409418 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.28481 -38.67852 -38.06363 -37.08060 -34.86071 -33.13799 -31.57925 -30.80620 -28.51618 -28.01275 -25.95072 -24.92511 -23.19949 -22.42225 -20.89407 -19.03429 -18.39010 -17.52480 -17.12550 -16.79524 -16.62065 -15.82392 -15.55141 -15.31363 -15.10948 -14.86719 -14.33975 -14.13119 -13.96716 -13.72480 -13.14010 -13.11277 -12.85049 -12.79400 -12.68594 -12.55000 -12.40108 -12.13729 -11.93377 -11.75746 -11.57599 -11.47001 -11.26679 -10.77786 -10.52739 -9.96886 -9.09517 -8.92624 -8.07773 -6.19688 0.23301 0.25301 1.22176 1.41396 1.43948 1.54768 2.39088 2.43642 2.60102 3.20954 3.64072 3.78703 3.93953 4.10999 4.23038 4.36304 4.43618 4.49685 4.51899 4.65529 4.75467 4.78658 4.81122 4.93211 4.97041 5.14514 5.20681 5.31616 5.33312 5.41717 5.58217 5.65211 5.73297 5.84497 5.91010 6.30075 6.40695 6.53001 6.80632 7.04345 7.48728 8.97587 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.019234 B = 0.004574 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.380762 B = 6120.316079 C = 7136.209620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C 0.222 3.778 4 H -0.037 1.037 5 C -0.520 4.520 6 H 0.054 0.946 7 C 0.018 3.982 8 N -0.917 5.917 9 Si 0.954 3.046 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.282 1.282 13 N -0.670 5.670 14 C 0.113 3.887 15 C -0.107 4.107 16 C -0.065 4.065 17 C -0.079 4.079 18 Cl -0.072 7.072 19 C -0.070 4.070 20 C -0.192 4.192 21 C 0.129 3.871 22 O -0.334 6.334 23 C 0.017 3.983 24 H 0.050 0.950 25 H 0.033 0.967 26 H 0.034 0.966 27 H 0.020 0.980 28 H 0.058 0.942 29 H 0.260 0.740 30 H 0.331 0.669 31 H 0.020 0.980 32 H 0.067 0.933 33 H 0.136 0.864 34 H 0.161 0.839 35 H 0.166 0.834 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.322 8.484 -17.585 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.137 4.137 3 C 0.114 3.886 4 H -0.019 1.019 5 C -0.559 4.559 6 H 0.073 0.927 7 C -0.182 4.182 8 N -0.556 5.556 9 Si 0.780 3.220 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.208 1.208 13 N -0.300 5.300 14 C -0.016 4.016 15 C -0.108 4.108 16 C -0.084 4.084 17 C -0.106 4.106 18 Cl -0.043 7.043 19 C -0.089 4.089 20 C -0.210 4.210 21 C 0.083 3.917 22 O -0.248 6.248 23 C -0.077 4.077 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.148 0.852 31 H 0.038 0.962 32 H 0.086 0.914 33 H 0.154 0.846 34 H 0.178 0.822 35 H 0.183 0.817 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.638 7.727 -17.533 19.341 hybrid contribution 0.658 0.694 1.163 1.506 sum -1.979 8.421 -16.370 18.515 Atomic orbital electron populations 1.21296 0.95998 0.98299 1.00772 1.21312 0.96269 0.97590 0.98506 1.18931 0.90754 0.92263 0.86682 1.01949 1.21439 1.31273 1.11836 0.91330 0.92734 1.25610 0.95256 0.95672 1.01615 1.70027 1.37898 1.24017 1.23684 0.85560 0.78059 0.78743 0.79589 1.19158 1.20742 1.20829 1.60694 1.48136 1.15888 1.05322 1.20563 0.93066 0.99207 0.88789 1.19167 1.03151 0.91216 0.97279 1.20789 0.95345 1.00522 0.91725 1.20802 1.03623 0.92457 0.93669 1.98347 1.77675 1.69085 1.59170 1.21082 0.97180 0.90622 0.99968 1.21413 1.03356 1.02035 0.94231 1.19121 0.92784 0.90231 0.89582 1.86157 1.71599 1.21455 1.45550 1.23373 1.03220 0.77271 1.03810 0.93061 0.94817 0.94667 0.96081 0.92331 0.93038 0.85227 0.96172 0.91421 0.84599 0.82156 0.81675 0.90784 0.91220 0.87330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.81 9.52 71.98 0.69 -4.12 16 2 C -0.10 -4.87 5.58 30.59 0.17 -4.70 16 3 C 0.22 11.43 2.30 44.17 0.10 11.53 16 4 H -0.04 -2.14 7.84 -2.38 -0.02 -2.16 16 5 C -0.52 -28.52 7.27 25.60 0.19 -28.34 16 6 H 0.05 2.97 7.60 -2.91 -0.02 2.95 16 7 C 0.02 0.97 5.30 84.66 0.45 1.42 16 8 N -0.92 -52.96 11.32 21.45 0.24 -52.72 16 9 Si 0.95 43.71 29.54 68.60 2.03 45.73 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 13 N -0.67 -29.29 5.55 -499.48 -2.77 -32.06 16 14 C 0.11 4.31 5.25 85.56 0.45 4.75 16 15 C -0.11 -3.39 5.45 -19.77 -0.11 -3.50 16 16 C -0.06 -1.84 9.45 22.28 0.21 -1.63 16 17 C -0.08 -1.91 6.32 22.33 0.14 -1.77 16 18 Cl -0.07 -1.58 28.95 -2.72 -0.08 -1.65 16 19 C -0.07 -1.41 9.82 22.28 0.22 -1.19 16 20 C -0.19 -3.99 9.04 22.36 0.20 -3.79 16 21 C 0.13 3.60 6.66 22.50 0.15 3.75 16 22 O -0.33 -9.49 9.70 -92.71 -0.90 -10.39 16 23 C 0.02 0.30 9.81 113.37 1.11 1.41 16 24 H 0.05 2.21 7.69 -2.39 -0.02 2.19 16 25 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.03 1.70 7.12 -2.39 -0.02 1.69 16 27 H 0.02 0.96 7.46 -2.39 -0.02 0.94 16 28 H 0.06 3.25 6.08 -2.39 -0.01 3.23 16 29 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 30 H 0.33 14.70 8.21 -89.69 -0.74 13.96 16 31 H 0.02 0.82 7.85 -2.39 -0.02 0.80 16 32 H 0.07 2.58 7.27 -2.39 -0.02 2.56 16 33 H 0.14 3.82 8.03 -2.91 -0.02 3.79 16 34 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.17 2.30 6.30 -2.91 -0.02 2.28 16 36 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 37 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 38 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -62.34 327.59 2.81 -59.53 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.33 Total: 17.74 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: 3.97 Total: -26.17 kcal Atomic # 7 Polarization: -82.25 SS G_CDS: -2.53 Total: -84.78 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.90 Total: -10.39 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.65 kcal Total: -62.34 2.81 -59.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183970.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.723 kcal (2) G-P(sol) polarization free energy of solvation -62.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds