Wall clock time and date at job start Fri Apr 10 2020 14:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46914 * 2 1 4 4 H 1.09001 * 109.46985 * 177.96731 * 3 2 1 5 5 C 1.50702 * 109.47270 * 57.97056 * 3 2 1 6 6 H 1.08006 * 120.00011 * 239.99998 * 5 3 2 7 7 C 1.37873 * 120.00000 * 59.99720 * 5 3 2 8 8 N 1.31510 * 120.00130 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99731 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47357 * 60.00026 * 9 7 5 11 11 H 1.48506 * 109.46900 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47376 * 299.99729 * 9 7 5 13 13 N 1.46904 * 109.47623 * 297.96756 * 3 2 1 14 14 C 1.46895 * 110.99898 * 273.75443 * 13 3 2 15 15 C 1.50703 * 109.47130 * 174.80784 * 14 13 3 16 16 C 1.38264 * 119.94879 * 259.72412 * 15 14 13 17 17 C 1.38138 * 120.06854 * 179.72429 * 16 15 14 18 18 C 1.38766 * 119.96555 * 0.54852 * 17 16 15 19 19 O 1.35896 * 120.04804 * 179.70428 * 18 17 16 20 20 C 1.42899 * 116.99978 * 0.02562 * 19 18 17 21 21 C 1.38687 * 119.90412 * 359.72490 * 18 17 16 22 22 C 1.38287 * 119.93269 * 0.02562 * 21 18 17 23 23 Cl 1.73597 * 119.98752 * 179.97438 * 22 21 18 24 24 H 1.08999 * 109.47014 * 54.45056 * 1 2 3 25 25 H 1.08999 * 109.46796 * 294.44805 * 1 2 3 26 26 H 1.08996 * 109.46716 * 174.45052 * 1 2 3 27 27 H 1.08994 * 109.47422 * 120.00087 * 2 1 3 28 28 H 1.09001 * 109.47253 * 240.00460 * 2 1 3 29 29 H 0.96995 * 120.00016 * 180.02562 * 8 7 5 30 30 H 1.00897 * 111.00140 * 149.79555 * 13 3 2 31 31 H 1.09002 * 109.47243 * 294.80556 * 14 13 3 32 32 H 1.09001 * 109.47481 * 54.80525 * 14 13 3 33 33 H 1.07998 * 119.96968 * 359.97438 * 16 15 14 34 34 H 1.08001 * 120.01803 * 180.25321 * 17 16 15 35 35 H 1.09000 * 109.47196 * 59.99966 * 20 19 18 36 36 H 1.09001 * 109.47046 * 180.02562 * 20 19 18 37 37 H 1.08999 * 109.47145 * 299.99784 * 20 19 18 38 38 H 1.07996 * 120.03816 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0365 5 6 1.4970 2.1673 1.2045 6 1 0.8799 3.0441 1.0744 7 6 1.7880 1.7111 2.4727 8 7 2.5398 0.6438 2.6312 9 14 1.1142 2.6092 3.9657 10 1 -0.3699 2.6083 3.9159 11 1 1.5679 1.9233 5.2022 12 1 1.6087 4.0094 3.9659 13 7 1.5909 2.1208 -1.2232 14 6 2.5280 1.8858 -2.3298 15 6 1.9724 2.4873 -3.5949 16 6 1.3466 1.6795 -4.5263 17 6 0.8313 2.2290 -5.6842 18 6 0.9519 3.5915 -5.9181 19 8 0.4510 4.1329 -7.0595 20 6 -0.1881 3.2407 -7.9747 21 6 1.5849 4.3997 -4.9857 22 6 2.0946 3.8461 -3.8255 23 17 2.8878 4.8564 -2.6576 24 1 -0.3633 0.5975 -0.8361 25 1 -0.3633 0.4253 0.9355 26 1 -0.3632 -1.0228 -0.0994 27 1 1.8934 -0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 2.7441 0.3227 3.5233 30 1 1.4615 3.1084 -1.0624 31 1 3.4872 2.3489 -2.0981 32 1 2.6662 0.8134 -2.4675 33 1 1.2569 0.6183 -4.3466 34 1 0.3391 1.5979 -6.4093 35 1 -1.0337 2.7600 -7.4829 36 1 -0.5412 3.8003 -8.8409 37 1 0.5236 2.4814 -8.2986 38 1 1.6796 5.4604 -5.1653 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358283386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:19 Heat of formation + Delta-G solvation = -42.666881 kcal Electronic energy + Delta-G solvation = -19949.180954 eV Core-core repulsion = 16816.820978 eV Total energy + Delta-G solvation = -3132.359976 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.18738 -39.14575 -37.78734 -37.22517 -34.66431 -32.91468 -31.99020 -30.89638 -28.63460 -27.84278 -25.58719 -24.84114 -23.76654 -22.17580 -20.87017 -19.22977 -18.44040 -17.53974 -16.91154 -16.65889 -16.40616 -16.00279 -15.73303 -15.40494 -15.05907 -14.88615 -14.57186 -14.16900 -13.90244 -13.75203 -13.20298 -12.94994 -12.86471 -12.76456 -12.71817 -12.49608 -12.36894 -12.08471 -11.97499 -11.75890 -11.67802 -11.52989 -11.24675 -10.77467 -10.51367 -9.86056 -9.21147 -8.92880 -8.07588 -6.19003 0.12302 0.31594 1.07865 1.42826 1.43670 1.50926 2.40612 2.43556 2.58922 3.21235 3.73333 3.75070 3.97440 4.06397 4.16445 4.34785 4.45093 4.45700 4.62075 4.68534 4.76256 4.81430 4.84576 4.86618 4.99314 5.06004 5.25114 5.34093 5.41915 5.49883 5.54432 5.60414 5.73788 5.86236 5.93583 6.31067 6.37523 6.50813 6.80490 7.03817 7.49203 8.97243 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.024412 B = 0.004274 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.702476 B = 6549.959480 C = 7135.705555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.096 4.096 3 C 0.222 3.778 4 H -0.035 1.035 5 C -0.523 4.523 6 H 0.053 0.947 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.950 3.050 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.671 5.671 14 C 0.101 3.899 15 C -0.109 4.109 16 C -0.054 4.054 17 C -0.194 4.194 18 C 0.131 3.869 19 O -0.330 6.330 20 C 0.016 3.984 21 C -0.155 4.155 22 C -0.004 4.004 23 Cl -0.070 7.070 24 H 0.053 0.947 25 H 0.027 0.973 26 H 0.035 0.965 27 H 0.056 0.944 28 H 0.025 0.975 29 H 0.261 0.739 30 H 0.329 0.671 31 H 0.023 0.977 32 H 0.076 0.924 33 H 0.149 0.851 34 H 0.164 0.836 35 H 0.066 0.934 36 H 0.121 0.879 37 H 0.069 0.931 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.754 3.242 -20.064 20.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.135 4.135 3 C 0.114 3.886 4 H -0.018 1.018 5 C -0.562 4.562 6 H 0.071 0.929 7 C -0.179 4.179 8 N -0.554 5.554 9 Si 0.776 3.224 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.200 1.200 13 N -0.302 5.302 14 C -0.028 4.028 15 C -0.110 4.110 16 C -0.073 4.073 17 C -0.213 4.213 18 C 0.085 3.915 19 O -0.243 6.243 20 C -0.078 4.078 21 C -0.174 4.174 22 C -0.031 4.031 23 Cl -0.041 7.041 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.041 0.959 32 H 0.095 0.905 33 H 0.166 0.834 34 H 0.181 0.819 35 H 0.084 0.916 36 H 0.139 0.861 37 H 0.088 0.912 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.023 2.898 -20.064 20.667 hybrid contribution 0.768 0.866 1.542 1.928 sum -3.254 3.764 -18.522 19.179 Atomic orbital electron populations 1.21292 0.96078 0.98447 1.00536 1.21292 0.96225 0.97388 0.98578 1.18924 0.91069 0.92431 0.86178 1.01751 1.21393 1.31428 1.11889 0.91466 0.92929 1.25557 0.95368 0.95697 1.01303 1.70001 1.38331 1.24240 1.22858 0.85740 0.78959 0.78718 0.78998 1.19688 1.21031 1.20016 1.60707 1.47200 1.16093 1.06176 1.20779 0.93180 1.00040 0.88782 1.19709 1.02213 0.91734 0.97375 1.21003 0.93897 1.00633 0.91728 1.21575 1.05522 0.93851 1.00306 1.18805 0.94062 0.91729 0.86880 1.86047 1.71311 1.38639 1.28341 1.23415 0.97223 0.95094 0.92068 1.20216 1.03346 1.01134 0.92752 1.20586 0.99721 0.91102 0.91710 1.98381 1.78702 1.68611 1.58361 0.92757 0.95333 0.94562 0.92519 0.95609 0.93030 0.85328 0.95870 0.90544 0.83351 0.81881 0.91557 0.86119 0.91246 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.68 9.46 71.98 0.68 -3.99 16 2 C -0.10 -4.64 5.58 30.60 0.17 -4.46 16 3 C 0.22 11.23 2.30 44.17 0.10 11.33 16 4 H -0.04 -1.99 7.84 -2.39 -0.02 -2.01 16 5 C -0.52 -28.62 7.34 25.60 0.19 -28.43 16 6 H 0.05 2.87 7.60 -2.91 -0.02 2.85 16 7 C 0.02 1.11 5.30 84.65 0.45 1.56 16 8 N -0.91 -52.61 11.34 21.45 0.24 -52.37 16 9 Si 0.95 43.95 29.54 68.60 2.03 45.97 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 13 N -0.67 -28.58 5.50 -499.46 -2.74 -31.32 16 14 C 0.10 3.68 5.02 85.56 0.43 4.11 16 15 C -0.11 -3.33 5.44 -19.83 -0.11 -3.44 16 16 C -0.05 -1.34 9.66 22.25 0.21 -1.13 16 17 C -0.19 -4.01 9.04 22.37 0.20 -3.81 16 18 C 0.13 3.04 6.69 22.50 0.15 3.19 16 19 O -0.33 -6.60 10.50 -92.38 -0.97 -7.57 16 20 C 0.02 0.17 9.81 113.37 1.11 1.28 16 21 C -0.16 -4.07 9.77 22.39 0.22 -3.85 16 22 C 0.00 -0.12 6.31 22.31 0.14 0.02 16 23 Cl -0.07 -2.19 26.73 -2.72 -0.07 -2.26 16 24 H 0.05 2.29 7.50 -2.39 -0.02 2.27 16 25 H 0.03 1.36 7.37 -2.39 -0.02 1.34 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 3.07 6.13 -2.39 -0.01 3.06 16 28 H 0.03 1.12 7.43 -2.39 -0.02 1.11 16 29 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 30 H 0.33 14.41 7.44 -89.70 -0.67 13.75 16 31 H 0.02 0.90 7.35 -2.39 -0.02 0.88 16 32 H 0.08 2.70 7.25 -2.39 -0.02 2.69 16 33 H 0.15 3.23 8.03 -2.91 -0.02 3.21 16 34 H 0.16 2.23 6.30 -2.91 -0.02 2.22 16 35 H 0.07 0.61 7.66 -2.39 -0.02 0.59 16 36 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.57 7.66 -2.39 -0.02 0.56 16 38 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -61.98 324.84 2.83 -59.15 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.40 Total: 16.03 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: 3.95 Total: -27.63 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -2.50 Total: -83.69 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.97 Total: -7.57 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -0.07 Total: -2.26 kcal Total: -61.98 2.83 -59.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358283386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.481 kcal (2) G-P(sol) polarization free energy of solvation -61.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds