Wall clock time and date at job start Fri Apr 10 2020 15:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47139 * 2 1 4 4 H 1.09002 * 109.47410 * 174.08847 * 3 2 1 5 5 C 1.50706 * 109.46868 * 54.09402 * 3 2 1 6 6 H 1.08004 * 119.99877 * 239.99372 * 5 3 2 7 7 C 1.37869 * 120.00276 * 60.00102 * 5 3 2 8 8 N 1.31514 * 120.00019 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00217 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47034 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47448 * 119.99575 * 9 7 5 12 12 H 1.48503 * 109.46944 * 239.99771 * 9 7 5 13 13 N 1.46903 * 109.47548 * 294.09333 * 3 2 1 14 14 C 1.46896 * 110.99853 * 275.77650 * 13 3 2 15 15 C 1.50697 * 109.47331 * 176.22245 * 14 13 3 16 16 C 1.33443 * 122.72168 * 94.99444 * 15 14 13 17 17 S 1.76168 * 108.06487 * 179.97438 * 16 15 14 18 18 C 1.70968 * 90.34270 * 359.97438 * 17 16 15 19 19 N 1.39000 * 124.95031 * 180.02562 * 18 17 16 20 20 C 1.34778 * 119.99759 * 0.02562 * 19 18 17 21 21 C 1.50692 * 120.00325 * 180.27848 * 20 19 18 22 22 O 1.21288 * 119.99607 * 0.02562 * 20 19 18 23 23 N 1.29629 * 110.10900 * 0.26734 * 18 17 16 24 24 H 1.08997 * 109.47156 * 178.55991 * 1 2 3 25 25 H 1.08999 * 109.46937 * 298.55355 * 1 2 3 26 26 H 1.08992 * 109.47505 * 58.55494 * 1 2 3 27 27 H 1.09007 * 109.46500 * 240.00593 * 2 1 3 28 28 H 1.09000 * 109.47128 * 120.00355 * 2 1 3 29 29 H 0.96999 * 120.00299 * 180.02562 * 8 7 5 30 30 H 1.00901 * 110.99207 * 39.72705 * 13 3 2 31 31 H 1.08998 * 109.47496 * 56.21574 * 14 13 3 32 32 H 1.09001 * 109.46874 * 296.21739 * 14 13 3 33 33 H 1.08000 * 125.96666 * 0.02562 * 16 15 14 34 34 H 0.96993 * 120.00476 * 180.02562 * 19 18 17 35 35 H 1.09004 * 109.47468 * 179.72100 * 21 20 19 36 36 H 1.09006 * 109.47098 * 299.72892 * 21 20 19 37 37 H 1.09001 * 109.46967 * 59.72177 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1249 1.4443 0.1058 5 6 1.4218 2.1938 1.1509 6 1 0.8149 3.0670 0.9620 7 6 1.6310 1.7665 2.4449 8 7 2.3696 0.7030 2.6750 9 14 0.8641 2.6974 3.8714 10 1 0.0843 3.8483 3.3493 11 1 -0.0367 1.7905 4.6272 12 1 1.9357 3.1938 4.7717 13 7 1.6702 2.0927 -1.2643 14 6 2.6510 1.7940 -2.3164 15 6 2.1915 2.3990 -3.6179 16 6 2.6006 3.5966 -4.0409 17 16 1.8318 3.9199 -5.5926 18 6 1.0332 2.4098 -5.5231 19 7 0.1676 1.9214 -6.4948 20 6 -0.0945 2.6556 -7.5943 21 6 -1.0378 2.1289 -8.6449 22 8 0.4254 3.7422 -7.7360 23 7 1.3485 1.7888 -4.4298 24 1 -0.3633 -1.0273 -0.0258 25 1 -0.3633 0.4912 0.9027 26 1 -0.3634 0.5361 -0.8767 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.5166 0.4022 3.5854 30 1 0.7404 1.8247 -1.5501 31 1 2.7440 0.7140 -2.4305 32 1 3.6181 2.2150 -2.0415 33 1 3.2844 4.2528 -3.5228 34 1 -0.2479 1.0523 -6.3817 35 1 -1.1284 2.8578 -9.4502 36 1 -0.6498 1.1919 -9.0447 37 1 -2.0175 1.9558 -8.1996 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575134681.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:19 Heat of formation + Delta-G solvation = 11.104386 kcal Electronic energy + Delta-G solvation = -19626.306525 eV Core-core repulsion = 16530.614703 eV Total energy + Delta-G solvation = -3095.691822 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.60599 -39.39745 -36.43548 -35.14733 -32.62899 -31.18871 -30.40330 -28.92163 -26.73735 -25.03345 -23.60592 -23.08238 -21.71567 -19.79560 -19.25178 -18.19603 -17.02663 -16.54041 -16.15555 -16.10305 -14.87926 -14.84120 -14.48470 -14.22841 -13.76675 -13.27327 -13.15227 -12.93498 -12.76946 -12.66149 -12.37901 -11.93517 -11.53286 -11.44348 -10.97113 -10.90028 -10.66383 -10.47020 -10.21638 -9.90340 -9.80846 -9.60018 -9.50131 -9.03989 -8.93071 -8.31536 -8.16493 -7.16526 -5.94262 -3.95410 0.85691 1.25442 2.00770 2.04266 2.46789 3.09757 3.33763 3.41892 3.47481 4.22312 4.47912 4.63827 4.76093 4.84726 5.31532 5.37607 5.48797 5.62362 5.66968 5.76922 6.13640 6.22426 6.39259 6.42504 6.46830 6.62227 6.72304 6.97647 7.30804 7.33007 7.47471 7.54823 7.74431 7.92786 7.95023 8.31462 8.58293 8.65492 9.10568 9.68083 11.12936 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.030257 B = 0.003492 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.189342 B = 8016.845722 C = 8268.850117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.034 0.966 5 C -0.486 4.486 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.677 5.677 14 C 0.132 3.868 15 C 0.102 3.898 16 C -0.289 4.289 17 S 0.216 5.784 18 C 0.229 3.771 19 N -0.624 5.624 20 C 0.508 3.492 21 C -0.166 4.166 22 O -0.511 6.511 23 N -0.501 5.501 24 H 0.021 0.979 25 H 0.065 0.935 26 H 0.029 0.971 27 H 0.012 0.988 28 H 0.092 0.908 29 H 0.258 0.742 30 H 0.330 0.670 31 H 0.037 0.963 32 H 0.081 0.919 33 H 0.177 0.823 34 H 0.423 0.577 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.326 0.878 -20.916 21.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.107 3.893 4 H 0.052 0.948 5 C -0.525 4.525 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.309 5.309 14 C -0.001 4.001 15 C -0.029 4.029 16 C -0.430 4.430 17 S 0.465 5.535 18 C -0.138 4.138 19 N -0.274 5.274 20 C 0.295 3.705 21 C -0.225 4.225 22 O -0.386 6.386 23 N -0.224 5.224 24 H 0.040 0.960 25 H 0.084 0.916 26 H 0.048 0.952 27 H 0.030 0.970 28 H 0.110 0.890 29 H 0.068 0.932 30 H 0.149 0.851 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.195 0.805 34 H 0.261 0.739 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.877 2.447 -21.403 21.888 hybrid contribution -0.602 -1.541 1.596 2.298 sum -4.479 0.906 -19.807 20.327 Atomic orbital electron populations 1.21547 0.97717 0.97928 1.01176 1.22093 0.95062 1.01088 1.00200 1.19233 0.96158 0.88726 0.85161 0.94797 1.21093 1.30307 1.11448 0.89678 0.92002 1.24903 0.95611 0.95194 0.98673 1.69895 1.39397 1.24154 1.20172 0.86524 0.79020 0.79914 0.82463 1.19768 1.21268 1.21205 1.60974 1.04039 1.63004 1.02876 1.20475 0.96957 0.97164 0.85457 1.19989 0.94282 0.92008 0.96631 1.27232 1.11104 1.02315 1.02315 1.84648 1.38181 1.14761 1.15904 1.23387 0.99683 0.97598 0.93142 1.42876 1.43770 1.22756 1.17974 1.21277 0.82564 0.84738 0.81931 1.21875 0.98904 1.04240 0.97479 1.90698 1.50796 1.20755 1.76313 1.66142 1.17769 1.35887 1.02569 0.95971 0.91639 0.95172 0.96950 0.88975 0.93213 0.85120 0.94499 0.90061 0.80538 0.73883 0.87945 0.88546 0.88472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.39 37.16 0.35 -2.44 16 2 C -0.14 -3.46 5.50 -26.73 -0.15 -3.61 16 3 C 0.21 5.37 2.33 -68.86 -0.16 5.21 16 4 H 0.03 0.93 7.86 -51.93 -0.41 0.52 16 5 C -0.49 -13.29 7.35 -34.44 -0.25 -13.55 16 6 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 7 C 0.06 1.55 5.22 -17.82 -0.09 1.46 16 8 N -0.90 -25.38 11.39 55.43 0.63 -24.75 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.68 -14.90 6.24 -109.22 -0.68 -15.59 16 14 C 0.13 2.51 5.92 -4.98 -0.03 2.48 16 15 C 0.10 1.77 6.21 -84.20 -0.52 1.25 16 16 C -0.29 -4.44 11.09 29.06 0.32 -4.12 16 17 S 0.22 3.02 20.22 -107.50 -2.17 0.85 16 18 C 0.23 3.28 8.19 -87.35 -0.72 2.56 16 19 N -0.62 -6.36 5.40 -13.07 -0.07 -6.43 16 20 C 0.51 4.68 7.90 -10.99 -0.09 4.59 16 21 C -0.17 -0.66 10.32 36.00 0.37 -0.29 16 22 O -0.51 -6.59 14.55 5.55 0.08 -6.50 16 23 N -0.50 -8.36 10.58 -11.28 -0.12 -8.48 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 1.57 7.05 -51.93 -0.37 1.20 16 26 H 0.03 0.62 6.42 -51.93 -0.33 0.29 16 27 H 0.01 0.27 7.24 -51.93 -0.38 -0.11 16 28 H 0.09 2.45 6.25 -51.93 -0.32 2.12 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.33 7.29 6.55 -39.29 -0.26 7.03 16 31 H 0.04 0.72 7.23 -51.93 -0.38 0.35 16 32 H 0.08 1.49 8.08 -51.93 -0.42 1.07 16 33 H 0.18 2.42 8.06 -52.49 -0.42 2.00 16 34 H 0.42 3.14 8.82 -40.82 -0.36 2.78 16 35 H 0.10 0.39 8.12 -51.93 -0.42 -0.03 16 36 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 320.90 15.07 4.84 4.84 Total: -1.00 -31.95 320.90 -8.36 -40.31 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.88 Total: 5.72 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -0.97 Total: -6.45 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.24 Total: -55.24 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: 0.08 Total: -6.50 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.17 Total: 0.85 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.95 -8.36 -40.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575134681.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.419 kcal (2) G-P(sol) polarization free energy of solvation -31.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds