Wall clock time and date at job start Fri Apr 10 2020 15:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47139 * 2 1 4 4 H 1.09002 * 109.47410 * 174.08847 * 3 2 1 5 5 C 1.50706 * 109.46868 * 54.09402 * 3 2 1 6 6 H 1.08004 * 119.99877 * 239.99372 * 5 3 2 7 7 C 1.37869 * 120.00276 * 60.00102 * 5 3 2 8 8 N 1.31514 * 120.00019 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00217 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47034 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47448 * 119.99575 * 9 7 5 12 12 H 1.48503 * 109.46944 * 239.99771 * 9 7 5 13 13 N 1.46903 * 109.47548 * 294.09333 * 3 2 1 14 14 C 1.46896 * 110.99853 * 275.77650 * 13 3 2 15 15 C 1.50697 * 109.47331 * 176.22245 * 14 13 3 16 16 C 1.33443 * 122.72168 * 94.99444 * 15 14 13 17 17 S 1.76168 * 108.06487 * 179.97438 * 16 15 14 18 18 C 1.70968 * 90.34270 * 359.97438 * 17 16 15 19 19 N 1.39000 * 124.95031 * 180.02562 * 18 17 16 20 20 C 1.34778 * 119.99759 * 0.02562 * 19 18 17 21 21 C 1.50692 * 120.00325 * 180.27848 * 20 19 18 22 22 O 1.21288 * 119.99607 * 0.02562 * 20 19 18 23 23 N 1.29629 * 110.10900 * 0.26734 * 18 17 16 24 24 H 1.08997 * 109.47156 * 178.55991 * 1 2 3 25 25 H 1.08999 * 109.46937 * 298.55355 * 1 2 3 26 26 H 1.08992 * 109.47505 * 58.55494 * 1 2 3 27 27 H 1.09007 * 109.46500 * 240.00593 * 2 1 3 28 28 H 1.09000 * 109.47128 * 120.00355 * 2 1 3 29 29 H 0.96999 * 120.00299 * 180.02562 * 8 7 5 30 30 H 1.00901 * 110.99207 * 39.72705 * 13 3 2 31 31 H 1.08998 * 109.47496 * 56.21574 * 14 13 3 32 32 H 1.09001 * 109.46874 * 296.21739 * 14 13 3 33 33 H 1.08000 * 125.96666 * 0.02562 * 16 15 14 34 34 H 0.96993 * 120.00476 * 180.02562 * 19 18 17 35 35 H 1.09004 * 109.47468 * 179.72100 * 21 20 19 36 36 H 1.09006 * 109.47098 * 299.72892 * 21 20 19 37 37 H 1.09001 * 109.46967 * 59.72177 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1249 1.4443 0.1058 5 6 1.4218 2.1938 1.1509 6 1 0.8149 3.0670 0.9620 7 6 1.6310 1.7665 2.4449 8 7 2.3696 0.7030 2.6750 9 14 0.8641 2.6974 3.8714 10 1 0.0843 3.8483 3.3493 11 1 -0.0367 1.7905 4.6272 12 1 1.9357 3.1938 4.7717 13 7 1.6702 2.0927 -1.2643 14 6 2.6510 1.7940 -2.3164 15 6 2.1915 2.3990 -3.6179 16 6 2.6006 3.5966 -4.0409 17 16 1.8318 3.9199 -5.5926 18 6 1.0332 2.4098 -5.5231 19 7 0.1676 1.9214 -6.4948 20 6 -0.0945 2.6556 -7.5943 21 6 -1.0378 2.1289 -8.6449 22 8 0.4254 3.7422 -7.7360 23 7 1.3485 1.7888 -4.4298 24 1 -0.3633 -1.0273 -0.0258 25 1 -0.3633 0.4912 0.9027 26 1 -0.3634 0.5361 -0.8767 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.5166 0.4022 3.5854 30 1 0.7404 1.8247 -1.5501 31 1 2.7440 0.7140 -2.4305 32 1 3.6181 2.2150 -2.0415 33 1 3.2844 4.2528 -3.5228 34 1 -0.2479 1.0523 -6.3817 35 1 -1.1284 2.8578 -9.4502 36 1 -0.6498 1.1919 -9.0447 37 1 -2.0175 1.9558 -8.1996 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575134681.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:18 Heat of formation + Delta-G solvation = -11.687268 kcal Electronic energy + Delta-G solvation = -19627.294845 eV Core-core repulsion = 16530.614703 eV Total energy + Delta-G solvation = -3096.680142 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.52292 -40.51817 -38.22150 -36.16291 -34.46611 -32.73800 -31.41789 -30.05061 -28.54389 -26.58864 -25.17521 -24.66012 -22.60499 -21.22335 -20.90183 -19.22174 -18.15197 -17.83732 -17.65980 -17.01967 -16.77641 -16.45046 -15.70232 -15.26834 -15.20870 -14.75817 -14.59519 -14.27601 -14.06028 -13.73440 -13.45163 -13.21953 -13.11936 -12.90245 -12.75610 -12.44910 -12.37077 -12.02847 -11.86112 -11.68806 -11.42388 -11.12989 -10.94711 -10.77802 -10.42870 -10.19225 -9.31471 -8.94259 -8.04611 -6.12833 -0.24965 0.16597 0.85583 1.20046 1.42406 1.45187 1.56525 1.61800 1.91748 2.47286 3.24275 3.42147 3.72519 3.90880 4.18706 4.40584 4.50158 4.54232 4.59245 4.64076 4.64395 4.75406 4.78773 4.86056 5.07395 5.11810 5.19074 5.34980 5.42259 5.67187 5.74121 5.83399 5.93405 6.31167 6.65435 6.72953 6.76465 6.82117 6.98396 7.54602 9.01230 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.030257 B = 0.003492 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.189342 B = 8016.845722 C = 8268.850117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.137 4.137 3 C 0.221 3.779 4 H 0.004 0.996 5 C -0.499 4.499 6 H 0.050 0.950 7 C 0.015 3.985 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.283 1.283 13 N -0.678 5.678 14 C 0.138 3.862 15 C 0.082 3.918 16 C -0.294 4.294 17 S 0.242 5.758 18 C 0.227 3.773 19 N -0.616 5.616 20 C 0.505 3.495 21 C -0.155 4.155 22 O -0.549 6.549 23 N -0.525 5.525 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.023 0.977 28 H 0.064 0.936 29 H 0.259 0.741 30 H 0.330 0.670 31 H 0.029 0.971 32 H 0.082 0.918 33 H 0.188 0.812 34 H 0.436 0.564 35 H 0.106 0.894 36 H 0.122 0.878 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.813 0.927 -22.532 23.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.177 4.177 3 C 0.112 3.888 4 H 0.022 0.978 5 C -0.538 4.538 6 H 0.069 0.931 7 C -0.183 4.183 8 N -0.560 5.560 9 Si 0.778 3.222 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.209 1.209 13 N -0.310 5.310 14 C 0.006 3.994 15 C -0.049 4.049 16 C -0.435 4.435 17 S 0.492 5.508 18 C -0.141 4.141 19 N -0.268 5.268 20 C 0.295 3.705 21 C -0.213 4.213 22 O -0.426 6.426 23 N -0.249 5.249 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.042 0.958 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.149 0.851 31 H 0.047 0.953 32 H 0.100 0.900 33 H 0.205 0.795 34 H 0.278 0.722 35 H 0.125 0.875 36 H 0.141 0.859 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.384 2.477 -23.047 23.796 hybrid contribution -0.145 -1.539 1.951 2.490 sum -5.529 0.937 -21.095 21.828 Atomic orbital electron populations 1.21421 0.96110 0.99249 1.00578 1.21939 0.96412 1.00044 0.99308 1.18996 0.94098 0.89481 0.86180 0.97812 1.21267 1.30346 1.11337 0.90854 0.93138 1.25572 0.95982 0.95920 1.00869 1.70015 1.40191 1.25167 1.20649 0.85598 0.78248 0.78789 0.79542 1.19536 1.20694 1.20919 1.60852 1.04630 1.62704 1.02772 1.20358 0.96317 0.96917 0.85804 1.19714 0.95864 0.92925 0.96422 1.27434 1.10957 1.01838 1.03291 1.84614 1.37485 1.14359 1.14362 1.23723 0.99611 0.97662 0.93115 1.43117 1.42872 1.23521 1.17266 1.22394 0.82221 0.83978 0.81883 1.21971 0.98467 1.05192 0.95704 1.90673 1.52429 1.22640 1.76907 1.66101 1.18612 1.36652 1.03509 0.93770 0.93817 0.93951 0.95822 0.91726 0.93151 0.85116 0.95252 0.89962 0.79490 0.72244 0.87511 0.85943 0.86145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.06 9.39 71.98 0.68 -4.38 16 2 C -0.14 -6.62 5.50 30.59 0.17 -6.45 16 3 C 0.22 11.27 2.33 44.17 0.10 11.38 16 4 H 0.00 0.22 7.86 -2.39 -0.02 0.20 16 5 C -0.50 -27.66 7.35 25.60 0.19 -27.47 16 6 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 7 C 0.01 0.82 5.22 84.65 0.44 1.26 16 8 N -0.92 -52.79 11.39 21.44 0.24 -52.55 16 9 Si 0.95 44.26 29.54 68.60 2.03 46.28 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 13 N -0.68 -30.18 6.24 -499.47 -3.12 -33.30 16 14 C 0.14 5.33 5.92 85.56 0.51 5.83 16 15 C 0.08 2.83 6.21 41.45 0.26 3.08 16 16 C -0.29 -8.92 11.09 66.73 0.74 -8.18 16 17 S 0.24 6.54 20.22 -56.49 -1.14 5.40 16 18 C 0.23 6.22 8.19 179.20 1.47 7.68 16 19 N -0.62 -11.29 5.40 -313.64 -1.69 -12.99 16 20 C 0.51 8.13 7.90 87.65 0.69 8.82 16 21 C -0.15 -0.67 10.32 71.23 0.74 0.06 16 22 O -0.55 -13.29 14.55 -3.06 -0.04 -13.33 16 23 N -0.52 -17.17 10.58 -189.59 -2.01 -19.18 16 24 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.04 2.07 7.05 -2.39 -0.02 2.06 16 26 H 0.04 1.71 6.42 -2.39 -0.02 1.69 16 27 H 0.02 1.05 7.24 -2.38 -0.02 1.04 16 28 H 0.06 3.49 6.25 -2.39 -0.01 3.47 16 29 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 30 H 0.33 14.57 6.55 -89.69 -0.59 13.98 16 31 H 0.03 1.17 7.23 -2.39 -0.02 1.15 16 32 H 0.08 3.09 8.08 -2.39 -0.02 3.08 16 33 H 0.19 5.05 8.06 -2.91 -0.02 5.03 16 34 H 0.44 5.41 8.82 -92.71 -0.82 4.59 16 35 H 0.11 0.46 8.12 -2.39 -0.02 0.44 16 36 H 0.12 -0.02 8.14 -2.38 -0.02 -0.04 16 37 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 Total: -1.00 -69.32 320.90 -0.06 -69.38 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -0.30 Total: 18.65 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 5.98 Total: -8.36 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -6.58 Total: -118.01 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.04 Total: -13.33 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: 6.54 SS G_CDS: -1.14 Total: 5.40 kcal Total: -69.32 -0.06 -69.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575134681.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.692 kcal (2) G-P(sol) polarization free energy of solvation -69.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds