Wall clock time and date at job start Fri Apr 10 2020 15:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47647 * 2 1 4 4 H 1.09003 * 109.46475 * 54.86587 * 3 2 1 5 5 C 1.50692 * 109.47408 * 174.86348 * 3 2 1 6 6 H 1.08007 * 119.99966 * 119.99912 * 5 3 2 7 7 C 1.37875 * 120.00458 * 300.00543 * 5 3 2 8 8 N 1.31517 * 119.99813 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00306 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47341 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47436 * 120.00054 * 9 7 5 12 12 H 1.48503 * 109.46822 * 239.99545 * 9 7 5 13 13 N 1.46900 * 109.47227 * 294.86982 * 3 2 1 14 14 C 1.46892 * 111.00179 * 153.67253 * 13 3 2 15 15 C 1.50701 * 109.47326 * 176.12303 * 14 13 3 16 16 C 1.33445 * 122.71302 * 95.00017 * 15 14 13 17 17 S 1.76179 * 108.06162 * 180.02562 * 16 15 14 18 18 C 1.70967 * 90.33810 * 0.02562 * 17 16 15 19 19 N 1.39008 * 124.94395 * 180.02562 * 18 17 16 20 20 C 1.34776 * 119.99647 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.99618 * 180.28156 * 20 19 18 22 22 O 1.21281 * 120.00252 * 0.02562 * 20 19 18 23 23 N 1.29622 * 110.11557 * 0.26384 * 18 17 16 24 24 H 1.09001 * 109.46801 * 306.13903 * 1 2 3 25 25 H 1.08994 * 109.47251 * 66.13216 * 1 2 3 26 26 H 1.08993 * 109.47299 * 186.13874 * 1 2 3 27 27 H 1.09008 * 109.47157 * 240.00044 * 2 1 3 28 28 H 1.08999 * 109.47030 * 120.00462 * 2 1 3 29 29 H 0.97002 * 120.00140 * 179.97438 * 8 7 5 30 30 H 1.00904 * 110.99649 * 29.71783 * 13 3 2 31 31 H 1.09000 * 109.47039 * 56.12881 * 14 13 3 32 32 H 1.09001 * 109.47474 * 296.12644 * 14 13 3 33 33 H 1.07996 * 125.96998 * 0.07277 * 16 15 14 34 34 H 0.97000 * 119.99697 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.46927 * 179.72625 * 21 20 19 36 36 H 1.09003 * 109.46845 * 299.72220 * 21 20 19 37 37 H 1.09000 * 109.47546 * 59.72450 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6036 1.9821 0.8405 5 6 3.5417 1.4443 0.1272 6 1 4.1487 1.8882 -0.6480 7 6 4.1406 0.8792 1.2330 8 7 3.4014 0.3389 2.1771 9 14 6.0019 0.8821 1.3910 10 1 6.5984 1.5463 0.2042 11 1 6.3933 1.6184 2.6198 12 1 6.4937 -0.5166 1.4743 13 7 1.6543 2.0983 -1.2565 14 6 1.5446 3.5524 -1.0794 15 6 1.2415 4.1988 -2.4065 16 6 0.0001 4.4892 -2.8005 17 16 0.0924 5.2271 -4.3977 18 6 1.7950 5.0728 -4.3817 19 7 2.6410 5.4793 -5.4070 20 6 2.1294 6.0438 -6.5188 21 6 3.0460 6.4786 -7.6332 22 8 0.9310 6.1976 -6.6244 23 7 2.1819 4.5170 -3.2764 24 1 -0.3633 0.6061 0.8300 25 1 -0.3633 0.4158 -0.9397 26 1 -0.3633 -1.0217 0.1099 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8228 -0.0590 2.9550 30 1 0.7945 1.7120 -1.6168 31 1 2.4853 3.9431 -0.6914 32 1 0.7417 3.7732 -0.3759 33 1 -0.9033 4.3049 -2.2382 34 1 3.5995 5.3566 -5.3223 35 1 2.4553 6.9049 -8.4440 36 1 3.7431 7.2282 -7.2585 37 1 3.6026 5.6174 -8.0029 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575134682.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:23 Heat of formation + Delta-G solvation = 11.069746 kcal Electronic energy + Delta-G solvation = -19570.087761 eV Core-core repulsion = 16474.394437 eV Total energy + Delta-G solvation = -3095.693324 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.55056 -39.33069 -36.29194 -35.08145 -32.55308 -31.40261 -30.58906 -28.95860 -26.79780 -25.23546 -23.62275 -22.40886 -21.64712 -19.73083 -19.44916 -18.13784 -16.97114 -16.59203 -16.18824 -16.09050 -14.88377 -14.75273 -14.46405 -14.24774 -13.69258 -13.55547 -13.12837 -12.91942 -12.73780 -12.50830 -12.32405 -12.18775 -11.52619 -11.28646 -11.00220 -10.87344 -10.81202 -10.55317 -10.13806 -9.91624 -9.70046 -9.60727 -9.43835 -9.05157 -8.97193 -8.30707 -8.13230 -7.18555 -5.92451 -3.95684 0.88195 1.29453 2.03580 2.08195 2.52963 3.18007 3.34665 3.42392 3.48927 4.27594 4.49761 4.70343 4.81221 4.89682 5.33895 5.36023 5.44140 5.57339 5.73665 5.84681 6.13096 6.16791 6.18648 6.27106 6.43923 6.63534 6.76020 6.86602 7.09636 7.20937 7.50323 7.52531 7.80604 7.97773 8.06649 8.32171 8.42926 8.79153 9.13626 9.69116 11.13075 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.020876 B = 0.003996 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.954047 B = 7004.677895 C = 8011.159154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.219 3.781 4 H 0.003 0.997 5 C -0.489 4.489 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.677 5.677 14 C 0.138 3.862 15 C 0.116 3.884 16 C -0.314 4.314 17 S 0.209 5.791 18 C 0.232 3.768 19 N -0.623 5.623 20 C 0.508 3.492 21 C -0.166 4.166 22 O -0.513 6.513 23 N -0.482 5.482 24 H 0.042 0.958 25 H 0.035 0.965 26 H 0.037 0.963 27 H 0.041 0.959 28 H 0.100 0.900 29 H 0.258 0.742 30 H 0.317 0.683 31 H 0.091 0.909 32 H 0.035 0.965 33 H 0.173 0.827 34 H 0.424 0.576 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.027 11.018 -15.619 19.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.112 3.888 4 H 0.021 0.979 5 C -0.528 4.528 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.309 5.309 14 C 0.006 3.994 15 C -0.016 4.016 16 C -0.455 4.455 17 S 0.458 5.542 18 C -0.136 4.136 19 N -0.273 5.273 20 C 0.295 3.705 21 C -0.225 4.225 22 O -0.388 6.388 23 N -0.204 5.204 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.118 0.882 29 H 0.068 0.932 30 H 0.134 0.866 31 H 0.109 0.891 32 H 0.053 0.947 33 H 0.190 0.810 34 H 0.263 0.737 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.310 11.409 -16.484 20.505 hybrid contribution 0.985 -0.554 1.591 1.952 sum -3.325 10.855 -14.893 18.727 Atomic orbital electron populations 1.21884 0.99612 0.99759 0.99521 1.21769 0.91210 1.00278 1.03123 1.19185 0.95591 0.89925 0.84062 0.97906 1.21284 0.91218 1.35969 1.04354 0.91835 1.24956 0.98102 0.95722 0.95837 1.69884 1.34585 1.39673 1.09691 0.86493 0.85910 0.77517 0.77808 1.19774 1.21278 1.21214 1.60622 1.36390 1.00599 1.33286 1.20388 1.01366 0.90107 0.87588 1.20076 0.86643 0.97983 0.96925 1.27234 1.02410 1.13269 1.02561 1.84586 1.00178 1.56911 1.12491 1.23484 0.95044 1.02406 0.92639 1.42898 1.10909 1.58684 1.14831 1.21268 0.89946 0.76585 0.82652 1.21876 1.00253 1.03951 0.96433 1.90686 1.15934 1.53549 1.78621 1.66164 1.37480 1.15789 1.00968 0.93855 0.94629 0.94365 0.94040 0.88164 0.93213 0.86595 0.89114 0.94745 0.81009 0.73717 0.87996 0.88521 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.63 37.16 0.36 -2.56 16 2 C -0.13 -2.98 5.35 -26.73 -0.14 -3.12 16 3 C 0.22 5.51 2.03 -68.87 -0.14 5.37 16 4 H 0.00 0.09 7.83 -51.93 -0.41 -0.32 16 5 C -0.49 -13.71 8.62 -34.44 -0.30 -14.00 16 6 H 0.06 1.85 7.81 -52.48 -0.41 1.44 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.66 11.29 55.43 0.63 -25.03 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 N -0.68 -14.89 6.27 -109.23 -0.68 -15.57 16 14 C 0.14 2.74 5.89 -4.98 -0.03 2.71 16 15 C 0.12 2.08 6.29 -84.20 -0.53 1.55 16 16 C -0.31 -4.76 11.09 29.06 0.32 -4.44 16 17 S 0.21 2.96 20.22 -107.50 -2.17 0.79 16 18 C 0.23 3.50 8.19 -87.34 -0.72 2.79 16 19 N -0.62 -6.89 5.40 -13.07 -0.07 -6.96 16 20 C 0.51 4.97 7.90 -10.99 -0.09 4.89 16 21 C -0.17 -0.75 10.32 36.01 0.37 -0.38 16 22 O -0.51 -6.81 14.55 5.56 0.08 -6.73 16 23 N -0.48 -8.67 10.58 -11.27 -0.12 -8.79 16 24 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.03 0.62 6.65 -51.93 -0.35 0.28 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.99 8.14 -51.92 -0.42 0.57 16 28 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.32 6.42 6.60 -39.29 -0.26 6.16 16 31 H 0.09 1.99 7.99 -51.93 -0.41 1.58 16 32 H 0.03 0.64 8.08 -51.93 -0.42 0.22 16 33 H 0.17 2.21 8.06 -52.49 -0.42 1.78 16 34 H 0.42 3.62 8.82 -40.82 -0.36 3.26 16 35 H 0.10 0.43 8.12 -51.93 -0.42 0.01 16 36 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 324.70 15.07 4.89 4.89 Total: -1.00 -32.83 324.70 -8.47 -41.30 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.02 Total: 5.15 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -0.98 Total: -5.80 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.25 Total: -56.35 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: 0.08 Total: -6.73 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -2.17 Total: 0.79 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.83 -8.47 -41.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575134682.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.367 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds