Wall clock time and date at job start Fri Apr 10 2020 15:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47647 * 2 1 4 4 H 1.09003 * 109.46475 * 54.86587 * 3 2 1 5 5 C 1.50692 * 109.47408 * 174.86348 * 3 2 1 6 6 H 1.08007 * 119.99966 * 119.99912 * 5 3 2 7 7 C 1.37875 * 120.00458 * 300.00543 * 5 3 2 8 8 N 1.31517 * 119.99813 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00306 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47341 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47436 * 120.00054 * 9 7 5 12 12 H 1.48503 * 109.46822 * 239.99545 * 9 7 5 13 13 N 1.46900 * 109.47227 * 294.86982 * 3 2 1 14 14 C 1.46892 * 111.00179 * 153.67253 * 13 3 2 15 15 C 1.50701 * 109.47326 * 176.12303 * 14 13 3 16 16 C 1.33445 * 122.71302 * 95.00017 * 15 14 13 17 17 S 1.76179 * 108.06162 * 180.02562 * 16 15 14 18 18 C 1.70967 * 90.33810 * 0.02562 * 17 16 15 19 19 N 1.39008 * 124.94395 * 180.02562 * 18 17 16 20 20 C 1.34776 * 119.99647 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.99618 * 180.28156 * 20 19 18 22 22 O 1.21281 * 120.00252 * 0.02562 * 20 19 18 23 23 N 1.29622 * 110.11557 * 0.26384 * 18 17 16 24 24 H 1.09001 * 109.46801 * 306.13903 * 1 2 3 25 25 H 1.08994 * 109.47251 * 66.13216 * 1 2 3 26 26 H 1.08993 * 109.47299 * 186.13874 * 1 2 3 27 27 H 1.09008 * 109.47157 * 240.00044 * 2 1 3 28 28 H 1.08999 * 109.47030 * 120.00462 * 2 1 3 29 29 H 0.97002 * 120.00140 * 179.97438 * 8 7 5 30 30 H 1.00904 * 110.99649 * 29.71783 * 13 3 2 31 31 H 1.09000 * 109.47039 * 56.12881 * 14 13 3 32 32 H 1.09001 * 109.47474 * 296.12644 * 14 13 3 33 33 H 1.07996 * 125.96998 * 0.07277 * 16 15 14 34 34 H 0.97000 * 119.99697 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.46927 * 179.72625 * 21 20 19 36 36 H 1.09003 * 109.46845 * 299.72220 * 21 20 19 37 37 H 1.09000 * 109.47546 * 59.72450 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6036 1.9821 0.8405 5 6 3.5417 1.4443 0.1272 6 1 4.1487 1.8882 -0.6480 7 6 4.1406 0.8792 1.2330 8 7 3.4014 0.3389 2.1771 9 14 6.0019 0.8821 1.3910 10 1 6.5984 1.5463 0.2042 11 1 6.3933 1.6184 2.6198 12 1 6.4937 -0.5166 1.4743 13 7 1.6543 2.0983 -1.2565 14 6 1.5446 3.5524 -1.0794 15 6 1.2415 4.1988 -2.4065 16 6 0.0001 4.4892 -2.8005 17 16 0.0924 5.2271 -4.3977 18 6 1.7950 5.0728 -4.3817 19 7 2.6410 5.4793 -5.4070 20 6 2.1294 6.0438 -6.5188 21 6 3.0460 6.4786 -7.6332 22 8 0.9310 6.1976 -6.6244 23 7 2.1819 4.5170 -3.2764 24 1 -0.3633 0.6061 0.8300 25 1 -0.3633 0.4158 -0.9397 26 1 -0.3633 -1.0217 0.1099 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8228 -0.0590 2.9550 30 1 0.7945 1.7120 -1.6168 31 1 2.4853 3.9431 -0.6914 32 1 0.7417 3.7732 -0.3759 33 1 -0.9033 4.3049 -2.2382 34 1 3.5995 5.3566 -5.3223 35 1 2.4553 6.9049 -8.4440 36 1 3.7431 7.2282 -7.2585 37 1 3.6026 5.6174 -8.0029 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575134682.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:22 Heat of formation + Delta-G solvation = -12.766336 kcal Electronic energy + Delta-G solvation = -19571.121371 eV Core-core repulsion = 16474.394437 eV Total energy + Delta-G solvation = -3096.726934 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.50682 -40.49112 -38.07006 -36.14028 -34.44057 -33.08389 -31.48385 -30.08366 -28.62192 -26.79760 -25.01297 -24.11192 -22.58464 -21.50089 -20.76512 -19.19815 -18.38128 -17.87078 -17.69386 -17.02446 -16.75713 -16.26173 -15.84272 -15.41645 -15.17555 -14.96880 -14.46768 -14.11828 -13.89814 -13.78994 -13.42422 -13.20394 -13.11921 -13.10067 -12.76367 -12.54671 -12.35300 -12.00250 -11.95430 -11.57295 -11.47787 -11.09008 -11.01097 -10.68149 -10.42369 -10.16210 -9.29903 -9.00005 -8.05812 -6.17118 -0.25083 0.18002 0.86292 1.20705 1.40035 1.41886 1.54487 1.64586 1.95699 2.45417 3.19017 3.44945 3.72225 3.83448 4.31737 4.40537 4.49353 4.51346 4.57860 4.63570 4.63852 4.69872 4.74907 4.87752 5.08265 5.10169 5.20685 5.25433 5.37430 5.58939 5.75791 5.89296 5.94402 6.36027 6.48195 6.73180 6.87205 6.95719 6.98919 7.51543 8.97433 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.020876 B = 0.003996 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.954047 B = 7004.677895 C = 8011.159154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.226 3.774 4 H -0.024 1.024 5 C -0.510 4.510 6 H 0.044 0.956 7 C 0.011 3.989 8 N -0.918 5.918 9 Si 0.955 3.045 10 H -0.275 1.275 11 H -0.280 1.280 12 H -0.278 1.278 13 N -0.680 5.680 14 C 0.145 3.855 15 C 0.090 3.910 16 C -0.306 4.306 17 S 0.245 5.755 18 C 0.224 3.776 19 N -0.618 5.618 20 C 0.506 3.494 21 C -0.155 4.155 22 O -0.549 6.549 23 N -0.520 5.520 24 H 0.040 0.960 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.260 0.740 30 H 0.328 0.672 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.195 0.805 34 H 0.435 0.565 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.132 11.641 -17.391 21.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.118 3.882 4 H -0.007 1.007 5 C -0.549 4.549 6 H 0.062 0.938 7 C -0.187 4.187 8 N -0.559 5.559 9 Si 0.781 3.219 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.204 1.204 13 N -0.313 5.313 14 C 0.013 3.987 15 C -0.042 4.042 16 C -0.447 4.447 17 S 0.494 5.506 18 C -0.144 4.144 19 N -0.270 5.270 20 C 0.296 3.704 21 C -0.214 4.214 22 O -0.426 6.426 23 N -0.244 5.244 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.212 0.788 34 H 0.276 0.724 35 H 0.126 0.874 36 H 0.139 0.861 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.402 12.042 -18.280 22.328 hybrid contribution 0.999 -0.670 2.040 2.369 sum -3.403 11.372 -16.239 20.115 Atomic orbital electron populations 1.21747 0.96067 1.01239 1.00586 1.21587 0.94387 0.98730 1.01164 1.18954 0.94045 0.90728 0.84426 1.00684 1.21478 0.92868 1.36321 1.04240 0.93765 1.25642 1.02243 0.95320 0.95497 1.69996 1.36097 1.39857 1.09943 0.85557 0.80934 0.77725 0.77694 1.19933 1.20557 1.20422 1.60480 1.37265 1.01927 1.31607 1.20194 1.00184 0.88778 0.89526 1.19746 0.87869 1.00050 0.96544 1.27486 1.02181 1.11662 1.03350 1.84506 0.99161 1.55925 1.11007 1.23821 0.96417 1.01509 0.92646 1.43162 1.11244 1.58378 1.14206 1.22367 0.90213 0.75064 0.82737 1.21972 0.99710 1.05375 0.94312 1.90657 1.17881 1.54983 1.79122 1.66099 1.38436 1.17626 1.02197 0.94101 0.92484 0.92383 0.94796 0.91178 0.93030 0.85344 0.92283 0.93511 0.78823 0.72407 0.87356 0.86057 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.23 9.63 71.98 0.69 -4.54 16 2 C -0.12 -5.77 5.35 30.59 0.16 -5.60 16 3 C 0.23 11.67 2.03 44.17 0.09 11.76 16 4 H -0.02 -1.37 7.83 -2.39 -0.02 -1.39 16 5 C -0.51 -29.46 8.62 25.60 0.22 -29.24 16 6 H 0.04 2.66 7.81 -2.91 -0.02 2.64 16 7 C 0.01 0.63 5.29 84.65 0.45 1.07 16 8 N -0.92 -53.39 11.29 21.45 0.24 -53.15 16 9 Si 0.95 45.30 29.54 68.60 2.03 47.32 16 10 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 13 N -0.68 -30.39 6.27 -499.49 -3.13 -33.52 16 14 C 0.15 5.92 5.89 85.56 0.50 6.42 16 15 C 0.09 3.22 6.29 41.45 0.26 3.48 16 16 C -0.31 -8.90 11.09 66.73 0.74 -8.16 16 17 S 0.24 6.59 20.22 -56.49 -1.14 5.45 16 18 C 0.22 6.59 8.19 179.20 1.47 8.06 16 19 N -0.62 -12.80 5.40 -313.65 -1.69 -14.49 16 20 C 0.51 8.88 7.90 87.66 0.69 9.58 16 21 C -0.16 -0.90 10.32 71.24 0.74 -0.17 16 22 O -0.55 -13.71 14.55 -3.03 -0.04 -13.76 16 23 N -0.52 -18.81 10.58 -189.58 -2.01 -20.81 16 24 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.06 1.89 6.65 -2.39 -0.02 1.87 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.03 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.07 3.81 5.95 -2.39 -0.01 3.79 16 29 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 30 H 0.33 13.15 6.60 -89.69 -0.59 12.56 16 31 H 0.06 2.74 7.99 -2.39 -0.02 2.72 16 32 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 33 H 0.19 4.57 8.06 -2.91 -0.02 4.55 16 34 H 0.44 6.80 8.82 -92.71 -0.82 5.98 16 35 H 0.11 0.58 8.12 -2.39 -0.02 0.56 16 36 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 Total: -1.00 -72.79 324.70 -0.04 -72.83 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -0.31 Total: 17.48 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 6.02 Total: -7.35 kcal Atomic # 7 Polarization: -115.39 SS G_CDS: -6.59 Total: -121.97 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.04 Total: -13.76 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: 6.59 SS G_CDS: -1.14 Total: 5.45 kcal Total: -72.79 -0.04 -72.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575134682.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.064 kcal (2) G-P(sol) polarization free energy of solvation -72.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds