Wall clock time and date at job start Fri Apr 10 2020 15:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47149 * 2 1 4 4 H 1.08995 * 109.46840 * 175.06495 * 3 2 1 5 5 C 1.50698 * 109.47095 * 55.06745 * 3 2 1 6 6 H 1.08003 * 119.99656 * 245.69463 * 5 3 2 7 7 C 1.37868 * 120.00305 * 65.70129 * 5 3 2 8 8 N 1.31517 * 120.00392 * 5.49310 * 7 5 3 9 9 Si 1.86807 * 120.00001 * 185.49572 * 7 5 3 10 10 H 1.48504 * 109.46902 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47104 * 299.99557 * 9 7 5 12 12 H 1.48497 * 109.46947 * 60.00017 * 9 7 5 13 13 N 1.46902 * 109.46840 * 295.06538 * 3 2 1 14 14 C 1.46900 * 110.99687 * 279.83053 * 13 3 2 15 15 C 1.50698 * 109.46704 * 185.02706 * 14 13 3 16 16 C 1.38273 * 119.96601 * 89.99787 * 15 14 13 17 17 C 1.38246 * 120.12136 * 179.97438 * 16 15 14 18 18 C 1.38256 * 120.04235 * 359.97438 * 17 16 15 19 19 Cl 1.73603 * 120.03726 * 179.97438 * 18 17 16 20 20 C 1.38814 * 119.92657 * 0.02562 * 18 17 16 21 21 O 1.35924 * 120.06255 * 179.97438 * 20 18 17 22 22 C 1.42895 * 116.99578 * 179.97438 * 21 20 18 23 23 C 1.38158 * 119.96159 * 269.72354 * 15 14 13 24 24 H 1.09003 * 109.46806 * 305.01089 * 1 2 3 25 25 H 1.08997 * 109.47055 * 65.00583 * 1 2 3 26 26 H 1.08993 * 109.47295 * 185.01354 * 1 2 3 27 27 H 1.08992 * 109.47109 * 239.99684 * 2 1 3 28 28 H 1.09002 * 109.46673 * 119.99518 * 2 1 3 29 29 H 0.96999 * 119.99483 * 355.15096 * 8 7 5 30 30 H 1.00901 * 110.99934 * 43.78184 * 13 3 2 31 31 H 1.09001 * 109.47337 * 305.02008 * 14 13 3 32 32 H 1.09001 * 109.47342 * 65.02547 * 14 13 3 33 33 H 1.07998 * 119.93761 * 0.02562 * 16 15 14 34 34 H 1.08008 * 119.97988 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.47289 * 60.00577 * 22 21 20 36 36 H 1.09005 * 109.46888 * 180.02562 * 22 21 20 37 37 H 1.08994 * 109.47606 * 300.00133 * 22 21 20 38 38 H 1.08007 * 120.01958 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4437 0.0884 5 6 1.4404 2.1873 1.1648 6 1 0.7570 3.0048 0.9888 7 6 1.7644 1.8252 2.4550 8 7 2.6774 0.9033 2.6698 9 14 0.9065 2.6440 3.8983 10 1 1.4299 2.0816 5.1692 11 1 1.1620 4.1063 3.8613 12 1 -0.5548 2.3944 3.8119 13 7 1.6500 2.0997 -1.2546 14 6 2.5596 1.7300 -2.3473 15 6 2.2047 2.5154 -3.5835 16 6 2.7969 3.7433 -3.8154 17 6 2.4741 4.4662 -4.9487 18 6 1.5583 3.9624 -5.8536 19 17 1.1526 4.8707 -7.2763 20 6 0.9626 2.7300 -5.6227 21 8 0.0615 2.2323 -6.5102 22 6 -0.5108 0.9583 -6.2081 23 6 1.2923 2.0053 -4.4869 24 1 -0.3633 0.5896 0.8417 25 1 -0.3633 0.4342 -0.9314 26 1 -0.3633 -1.0237 0.0898 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.0722 0.4283 1.9219 30 1 0.6931 1.8857 -1.4926 31 1 3.5861 1.9537 -2.0570 32 1 2.4645 0.6641 -2.5543 33 1 3.5135 4.1378 -3.1102 34 1 2.9384 5.4249 -5.1277 35 1 -1.0377 1.0133 -5.2555 36 1 -1.2110 0.6787 -6.9954 37 1 0.2799 0.2109 -6.1434 38 1 0.8333 1.0443 -4.3069 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577122529.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:02 Heat of formation + Delta-G solvation = -29.018743 kcal Electronic energy + Delta-G solvation = -19929.109229 eV Core-core repulsion = 16797.341081 eV Total energy + Delta-G solvation = -3131.768149 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.27777 -37.92779 -36.83390 -36.24539 -33.24839 -31.36519 -30.29997 -29.83868 -27.57654 -26.20451 -24.17750 -23.61369 -22.37286 -21.29857 -19.57417 -18.02976 -16.80422 -16.58722 -16.18569 -15.92965 -15.05339 -14.49147 -14.20771 -13.94385 -13.72486 -13.47113 -13.29373 -13.16138 -12.60222 -12.30360 -12.18216 -11.85072 -11.60888 -11.54588 -11.23139 -10.97862 -10.93203 -10.80861 -10.78322 -10.30804 -10.16010 -10.07680 -9.92714 -8.84824 -8.68065 -8.27873 -8.16468 -7.41838 -6.32676 -4.03021 1.12823 1.33704 2.17471 3.08442 3.44687 3.45677 3.60274 3.64543 4.51881 4.66513 4.73431 4.96557 5.00708 5.09452 5.24304 5.31926 5.34986 5.40508 5.43324 5.62604 5.80180 6.00125 6.02682 6.05698 6.08601 6.21004 6.26111 6.59152 6.61272 6.66476 6.91032 6.97174 7.16464 7.16830 7.24998 7.82505 8.20133 8.36720 8.60075 8.89421 9.65389 11.03468 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.024887 B = 0.003768 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.836638 B = 7428.342816 C = 7920.285222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.154 4.154 3 C 0.204 3.796 4 H 0.028 0.972 5 C -0.571 4.571 6 H 0.055 0.945 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 1.067 2.933 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.289 1.289 13 N -0.668 5.668 14 C 0.090 3.910 15 C -0.020 4.020 16 C -0.123 4.123 17 C -0.074 4.074 18 C -0.076 4.076 19 Cl -0.069 7.069 20 C 0.134 3.866 21 O -0.309 6.309 22 C 0.026 3.974 23 C -0.194 4.194 24 H 0.073 0.927 25 H 0.031 0.969 26 H 0.028 0.972 27 H 0.020 0.980 28 H 0.068 0.932 29 H 0.269 0.731 30 H 0.330 0.670 31 H 0.078 0.922 32 H 0.029 0.971 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.924 1.359 -17.120 17.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.194 4.194 3 C 0.095 3.905 4 H 0.046 0.954 5 C -0.610 4.610 6 H 0.074 0.926 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.895 3.105 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.299 5.299 14 C -0.040 4.040 15 C -0.020 4.020 16 C -0.142 4.142 17 C -0.093 4.093 18 C -0.103 4.103 19 Cl -0.040 7.040 20 C 0.088 3.912 21 O -0.222 6.222 22 C -0.069 4.069 23 C -0.214 4.214 24 H 0.092 0.908 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.039 0.961 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.148 0.852 31 H 0.096 0.904 32 H 0.047 0.953 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.077 0.923 36 H 0.119 0.881 37 H 0.074 0.926 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.725 2.175 -15.603 15.988 hybrid contribution -0.347 -1.244 -1.845 2.252 sum -3.072 0.931 -17.448 17.741 Atomic orbital electron populations 1.21594 0.96757 0.99147 1.01388 1.22276 0.96192 1.01433 0.99465 1.19383 0.95763 0.88383 0.86922 0.95400 1.21790 1.30097 1.18108 0.90972 0.92650 1.25710 0.95754 0.97057 1.00000 1.70822 1.24533 1.24458 1.35570 0.83567 0.75525 0.75641 0.75739 1.20974 1.21476 1.21547 1.60812 1.04780 1.62297 1.01970 1.20966 0.98869 0.95087 0.89057 1.19931 0.93211 0.94449 0.94455 1.20971 1.01857 0.94412 0.96965 1.20902 0.95586 0.99996 0.92819 1.20099 1.03819 0.93190 0.93186 1.98339 1.93316 1.73697 1.38681 1.18603 0.90795 0.92107 0.89714 1.86123 1.54571 1.36003 1.45472 1.23092 0.98139 0.82987 1.02689 1.21106 1.03200 1.01818 0.95247 0.90770 0.95011 0.95321 0.96096 0.91389 0.91965 0.85217 0.90365 0.95250 0.84647 0.84484 0.92329 0.88140 0.92572 0.84969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.38 37.16 0.35 -2.27 16 2 C -0.15 -3.34 5.45 -26.73 -0.15 -3.48 16 3 C 0.20 4.78 1.95 -68.86 -0.13 4.65 16 4 H 0.03 0.73 7.32 -51.93 -0.38 0.35 16 5 C -0.57 -15.17 7.18 -34.44 -0.25 -15.41 16 6 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 7 C 0.02 0.50 5.29 -17.82 -0.09 0.41 16 8 N -0.92 -26.44 13.21 55.43 0.73 -25.71 16 9 Si 1.07 24.61 29.91 -169.99 -5.08 19.53 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.67 -13.44 6.18 -109.22 -0.67 -14.11 16 14 C 0.09 1.50 5.60 -4.98 -0.03 1.47 16 15 C -0.02 -0.29 5.43 -104.64 -0.57 -0.86 16 16 C -0.12 -1.71 9.70 -39.57 -0.38 -2.09 16 17 C -0.07 -0.95 9.83 -39.57 -0.39 -1.34 16 18 C -0.08 -1.03 6.33 -39.36 -0.25 -1.27 16 19 Cl -0.07 -0.87 28.50 -51.86 -1.48 -2.35 16 20 C 0.13 1.84 6.68 -39.20 -0.26 1.58 16 21 O -0.31 -3.91 9.96 -19.50 -0.19 -4.10 16 22 C 0.03 0.23 9.81 101.05 0.99 1.22 16 23 C -0.19 -2.65 8.69 -39.44 -0.34 -2.99 16 24 H 0.07 1.65 6.88 -51.93 -0.36 1.29 16 25 H 0.03 0.56 6.68 -51.93 -0.35 0.22 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.02 0.41 7.13 -51.93 -0.37 0.04 16 28 H 0.07 1.64 6.17 -51.93 -0.32 1.32 16 29 H 0.27 7.65 5.62 -40.82 -0.23 7.42 16 30 H 0.33 6.43 6.79 -39.29 -0.27 6.16 16 31 H 0.08 1.33 7.89 -51.93 -0.41 0.92 16 32 H 0.03 0.48 7.14 -51.93 -0.37 0.11 16 33 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 35 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.45 7.65 -51.93 -0.40 0.06 16 38 H 0.13 1.61 6.30 -52.48 -0.33 1.28 16 LS Contribution 323.86 15.07 4.88 4.88 Total: -1.00 -29.05 323.86 -8.40 -37.45 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.07 Total: 4.80 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -1.50 Total: -20.40 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.06 Total: -39.82 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -0.19 Total: -4.10 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.08 Total: 19.53 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.48 Total: -2.35 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.05 -8.40 -37.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577122529.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.434 kcal (2) G-P(sol) polarization free energy of solvation -29.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds