Wall clock time and date at job start Fri Apr 10 2020 15:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47149 * 2 1 4 4 H 1.08995 * 109.46840 * 175.06495 * 3 2 1 5 5 C 1.50698 * 109.47095 * 55.06745 * 3 2 1 6 6 H 1.08003 * 119.99656 * 245.69463 * 5 3 2 7 7 C 1.37868 * 120.00305 * 65.70129 * 5 3 2 8 8 N 1.31517 * 120.00392 * 5.49310 * 7 5 3 9 9 Si 1.86807 * 120.00001 * 185.49572 * 7 5 3 10 10 H 1.48504 * 109.46902 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47104 * 299.99557 * 9 7 5 12 12 H 1.48497 * 109.46947 * 60.00017 * 9 7 5 13 13 N 1.46902 * 109.46840 * 295.06538 * 3 2 1 14 14 C 1.46900 * 110.99687 * 279.83053 * 13 3 2 15 15 C 1.50698 * 109.46704 * 185.02706 * 14 13 3 16 16 C 1.38273 * 119.96601 * 89.99787 * 15 14 13 17 17 C 1.38246 * 120.12136 * 179.97438 * 16 15 14 18 18 C 1.38256 * 120.04235 * 359.97438 * 17 16 15 19 19 Cl 1.73603 * 120.03726 * 179.97438 * 18 17 16 20 20 C 1.38814 * 119.92657 * 0.02562 * 18 17 16 21 21 O 1.35924 * 120.06255 * 179.97438 * 20 18 17 22 22 C 1.42895 * 116.99578 * 179.97438 * 21 20 18 23 23 C 1.38158 * 119.96159 * 269.72354 * 15 14 13 24 24 H 1.09003 * 109.46806 * 305.01089 * 1 2 3 25 25 H 1.08997 * 109.47055 * 65.00583 * 1 2 3 26 26 H 1.08993 * 109.47295 * 185.01354 * 1 2 3 27 27 H 1.08992 * 109.47109 * 239.99684 * 2 1 3 28 28 H 1.09002 * 109.46673 * 119.99518 * 2 1 3 29 29 H 0.96999 * 119.99483 * 355.15096 * 8 7 5 30 30 H 1.00901 * 110.99934 * 43.78184 * 13 3 2 31 31 H 1.09001 * 109.47337 * 305.02008 * 14 13 3 32 32 H 1.09001 * 109.47342 * 65.02547 * 14 13 3 33 33 H 1.07998 * 119.93761 * 0.02562 * 16 15 14 34 34 H 1.08008 * 119.97988 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.47289 * 60.00577 * 22 21 20 36 36 H 1.09005 * 109.46888 * 180.02562 * 22 21 20 37 37 H 1.08994 * 109.47606 * 300.00133 * 22 21 20 38 38 H 1.08007 * 120.01958 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4437 0.0884 5 6 1.4404 2.1873 1.1648 6 1 0.7570 3.0048 0.9888 7 6 1.7644 1.8252 2.4550 8 7 2.6774 0.9033 2.6698 9 14 0.9065 2.6440 3.8983 10 1 1.4299 2.0816 5.1692 11 1 1.1620 4.1063 3.8613 12 1 -0.5548 2.3944 3.8119 13 7 1.6500 2.0997 -1.2546 14 6 2.5596 1.7300 -2.3473 15 6 2.2047 2.5154 -3.5835 16 6 2.7969 3.7433 -3.8154 17 6 2.4741 4.4662 -4.9487 18 6 1.5583 3.9624 -5.8536 19 17 1.1526 4.8707 -7.2763 20 6 0.9626 2.7300 -5.6227 21 8 0.0615 2.2323 -6.5102 22 6 -0.5108 0.9583 -6.2081 23 6 1.2923 2.0053 -4.4869 24 1 -0.3633 0.5896 0.8417 25 1 -0.3633 0.4342 -0.9314 26 1 -0.3633 -1.0237 0.0898 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.0722 0.4283 1.9219 30 1 0.6931 1.8857 -1.4926 31 1 3.5861 1.9537 -2.0570 32 1 2.4645 0.6641 -2.5543 33 1 3.5135 4.1378 -3.1102 34 1 2.9384 5.4249 -5.1277 35 1 -1.0377 1.0133 -5.2555 36 1 -1.2110 0.6787 -6.9954 37 1 0.2799 0.2109 -6.1434 38 1 0.8333 1.0443 -4.3069 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577122529.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:01 Heat of formation + Delta-G solvation = -45.773851 kcal Electronic energy + Delta-G solvation = -19929.835785 eV Core-core repulsion = 16797.341081 eV Total energy + Delta-G solvation = -3132.494705 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.27765 -39.12545 -38.22514 -37.38308 -34.88670 -33.04004 -31.42986 -31.10057 -28.54409 -27.78277 -25.82378 -25.31047 -23.36252 -22.46059 -21.38187 -19.19721 -18.59990 -17.58960 -17.21720 -16.82214 -16.58679 -15.97102 -15.55828 -15.42868 -15.08084 -14.82886 -14.66240 -14.38151 -14.05813 -13.73404 -13.54423 -13.13875 -12.86887 -12.71381 -12.59256 -12.47925 -12.21265 -11.98876 -11.98023 -11.88656 -11.86962 -11.79600 -11.67114 -10.64678 -10.33980 -9.88552 -9.21355 -9.04008 -8.47742 -6.18610 0.05668 0.30228 1.15957 1.57573 1.63689 1.82730 2.22558 2.51728 2.63061 3.28220 3.52672 3.70237 3.85439 3.97153 4.21891 4.28963 4.34613 4.35192 4.35812 4.41980 4.50764 4.53330 4.63148 4.71020 4.79287 4.93120 4.99479 5.12097 5.14740 5.22206 5.40008 5.54892 5.56725 5.60924 5.96611 6.23087 6.23461 6.55222 6.72267 6.81262 7.56971 8.88949 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.024887 B = 0.003768 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.836638 B = 7428.342816 C = 7920.285222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.146 4.146 3 C 0.208 3.792 4 H -0.003 1.003 5 C -0.574 4.574 6 H 0.044 0.956 7 C -0.027 4.027 8 N -0.943 5.943 9 Si 1.107 2.893 10 H -0.289 1.289 11 H -0.278 1.278 12 H -0.272 1.272 13 N -0.674 5.674 14 C 0.096 3.904 15 C -0.033 4.033 16 C -0.132 4.132 17 C -0.070 4.070 18 C -0.086 4.086 19 Cl -0.062 7.062 20 C 0.130 3.870 21 O -0.320 6.320 22 C 0.017 3.983 23 C -0.193 4.193 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.260 0.740 30 H 0.334 0.666 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.137 0.863 34 H 0.159 0.841 35 H 0.061 0.939 36 H 0.124 0.876 37 H 0.065 0.935 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.138 1.495 -18.466 18.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.186 4.186 3 C 0.099 3.901 4 H 0.015 0.985 5 C -0.613 4.613 6 H 0.062 0.938 7 C -0.225 4.225 8 N -0.582 5.582 9 Si 0.930 3.070 10 H -0.215 1.215 11 H -0.203 1.203 12 H -0.197 1.197 13 N -0.304 5.304 14 C -0.033 4.033 15 C -0.033 4.033 16 C -0.151 4.151 17 C -0.088 4.088 18 C -0.114 4.114 19 Cl -0.033 7.033 20 C 0.083 3.917 21 O -0.234 6.234 22 C -0.077 4.077 23 C -0.212 4.212 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.153 0.847 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.155 0.845 34 H 0.177 0.823 35 H 0.080 0.920 36 H 0.142 0.858 37 H 0.083 0.917 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.951 2.311 -16.984 17.590 hybrid contribution 0.022 -1.279 -1.564 2.021 sum -3.929 1.032 -18.548 18.988 Atomic orbital electron populations 1.21501 0.95086 1.00224 1.01362 1.22122 0.97576 0.99830 0.99027 1.19143 0.93646 0.89505 0.87841 0.98507 1.22046 1.29341 1.17661 0.92219 0.93752 1.26891 0.95745 0.97084 1.02786 1.70918 1.26108 1.25865 1.35289 0.83040 0.75579 0.75357 0.72981 1.21459 1.20338 1.19713 1.60647 1.05600 1.62298 1.01898 1.20886 0.97634 0.95978 0.88780 1.19772 0.94567 0.94910 0.94100 1.21072 1.02083 0.94394 0.97580 1.21097 0.95101 1.00595 0.92004 1.20333 1.03942 0.93487 0.93591 1.98340 1.93266 1.73466 1.38238 1.18714 0.90938 0.92205 0.89815 1.86119 1.54259 1.37602 1.45384 1.23383 0.98788 0.81687 1.03866 1.21187 1.02745 1.02366 0.94929 0.93450 0.92793 0.93192 0.93936 0.94318 0.92937 0.84669 0.91273 0.94341 0.84504 0.82331 0.92041 0.85776 0.91678 0.83573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.76 9.38 71.98 0.68 -4.08 16 2 C -0.15 -6.26 5.45 30.59 0.17 -6.09 16 3 C 0.21 9.84 1.95 44.17 0.09 9.92 16 4 H 0.00 -0.16 7.32 -2.39 -0.02 -0.18 16 5 C -0.57 -30.75 7.18 25.60 0.18 -30.57 16 6 H 0.04 2.43 7.82 -2.91 -0.02 2.41 16 7 C -0.03 -1.49 5.29 84.65 0.45 -1.04 16 8 N -0.94 -55.50 13.21 21.44 0.28 -55.22 16 9 Si 1.11 49.55 29.91 68.60 2.05 51.60 16 10 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 11 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 13 N -0.67 -26.72 6.18 -499.47 -3.09 -29.81 16 14 C 0.10 3.15 5.60 85.56 0.48 3.63 16 15 C -0.03 -0.93 5.43 -19.88 -0.11 -1.04 16 16 C -0.13 -3.53 9.70 22.28 0.22 -3.32 16 17 C -0.07 -1.66 9.83 22.28 0.22 -1.44 16 18 C -0.09 -2.19 6.33 22.41 0.14 -2.04 16 19 Cl -0.06 -1.45 28.50 -2.72 -0.08 -1.52 16 20 C 0.13 3.32 6.68 22.52 0.15 3.47 16 21 O -0.32 -7.43 9.96 -92.70 -0.92 -8.35 16 22 C 0.02 0.26 9.81 113.37 1.11 1.37 16 23 C -0.19 -4.91 8.69 22.36 0.19 -4.71 16 24 H 0.05 2.06 6.88 -2.39 -0.02 2.04 16 25 H 0.05 1.80 6.68 -2.39 -0.02 1.78 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.04 1.61 7.13 -2.39 -0.02 1.60 16 28 H 0.04 1.89 6.17 -2.39 -0.01 1.87 16 29 H 0.26 15.29 5.62 -92.71 -0.52 14.77 16 30 H 0.33 12.58 6.79 -89.69 -0.61 11.98 16 31 H 0.07 2.37 7.89 -2.39 -0.02 2.35 16 32 H 0.04 1.19 7.14 -2.39 -0.02 1.17 16 33 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 34 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 35 H 0.06 0.91 7.67 -2.39 -0.02 0.89 16 36 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.06 0.88 7.65 -2.39 -0.02 0.86 16 38 H 0.15 3.20 6.30 -2.91 -0.02 3.18 16 Total: -1.00 -62.19 323.86 2.92 -59.26 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.71 Total: 19.98 kcal Atomic # 6 Polarization: -39.91 SS G_CDS: 3.96 Total: -35.95 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -2.80 Total: -85.03 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.92 Total: -8.35 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 2.05 Total: 51.60 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.52 kcal Total: -62.19 2.92 -59.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577122529.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.489 kcal (2) G-P(sol) polarization free energy of solvation -62.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds