Wall clock time and date at job start Fri Apr 10 2020 15:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47594 * 2 1 4 4 H 1.09006 * 109.46855 * 54.36004 * 3 2 1 5 5 C 1.50700 * 109.47485 * 174.35994 * 3 2 1 6 6 H 1.08003 * 119.99677 * 119.99659 * 5 3 2 7 7 C 1.37875 * 120.00175 * 300.00350 * 5 3 2 8 8 N 1.31514 * 119.99859 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00172 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47238 * 59.99907 * 9 7 5 11 11 H 1.48492 * 109.47465 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46994 * 300.00232 * 9 7 5 13 13 N 1.46901 * 109.47339 * 294.36433 * 3 2 1 14 14 C 1.46895 * 111.00135 * 152.94134 * 13 3 2 15 15 C 1.50703 * 109.47093 * 174.67948 * 14 13 3 16 16 O 1.21280 * 119.99813 * 359.97438 * 15 14 13 17 17 N 1.34783 * 120.00217 * 180.02562 * 15 14 13 18 18 C 1.38994 * 119.99918 * 179.97438 * 17 15 14 19 19 N 1.29628 * 124.94141 * 179.97438 * 18 17 15 20 20 C 1.31984 * 116.91853 * 180.02562 * 19 18 17 21 21 C 1.50696 * 122.71678 * 179.97438 * 20 19 18 22 22 C 1.33448 * 114.56812 * 359.97438 * 20 19 18 23 23 S 1.70965 * 124.94950 * 0.02562 * 18 17 15 24 24 H 1.09000 * 109.47186 * 299.31612 * 1 2 3 25 25 H 1.09002 * 109.46994 * 59.31451 * 1 2 3 26 26 H 1.08995 * 109.47751 * 179.31054 * 1 2 3 27 27 H 1.09000 * 109.47044 * 240.00174 * 2 1 3 28 28 H 1.09003 * 109.46801 * 120.00254 * 2 1 3 29 29 H 0.97000 * 120.00196 * 180.02562 * 8 7 5 30 30 H 1.00909 * 111.00062 * 28.98933 * 13 3 2 31 31 H 1.08998 * 109.47524 * 54.67726 * 14 13 3 32 32 H 1.09002 * 109.47550 * 294.67247 * 14 13 3 33 33 H 0.96999 * 119.99524 * 359.97438 * 17 15 14 34 34 H 1.09005 * 109.46907 * 90.02900 * 21 20 19 35 35 H 1.09007 * 109.47424 * 210.02263 * 21 20 19 36 36 H 1.08997 * 109.47417 * 330.02328 * 21 20 19 37 37 H 1.08003 * 125.96654 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5966 1.9846 0.8352 5 6 3.5406 1.4447 0.1396 6 1 4.1540 1.8863 -0.6318 7 6 4.1303 0.8829 1.2521 8 7 3.3833 0.3454 2.1916 9 14 5.9902 0.8850 1.4248 10 1 6.4858 2.2850 1.4245 11 1 6.3698 0.2254 2.6999 12 1 6.5939 0.1460 0.2869 13 7 1.6647 2.0946 -1.2616 14 6 1.5366 3.5473 -1.0855 15 6 1.2803 4.1947 -2.4221 16 8 1.2116 3.5130 -3.4228 17 7 1.1285 5.5313 -2.5055 18 6 0.8926 6.1284 -3.7383 19 7 0.7320 7.4006 -3.9285 20 6 0.5157 7.7966 -5.1688 21 6 0.3111 9.2433 -5.5378 22 6 0.4930 6.8123 -6.0696 23 16 0.7708 5.2919 -5.2243 24 1 -0.3633 0.5032 0.8960 25 1 -0.3633 0.5245 -0.8838 26 1 -0.3634 -1.0275 -0.0124 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.7981 -0.0495 2.9744 30 1 0.8143 1.6992 -1.6341 31 1 2.4583 3.9445 -0.6603 32 1 0.7052 3.7601 -0.4135 33 1 1.1838 6.0766 -1.7051 34 1 1.2738 9.6989 -5.7697 35 1 -0.3404 9.3073 -6.4095 36 1 -0.1483 9.7702 -4.7015 37 1 0.3319 6.9277 -7.1313 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594010452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:33 Heat of formation + Delta-G solvation = 11.326649 kcal Electronic energy + Delta-G solvation = -19529.682983 eV Core-core repulsion = 16434.000799 eV Total energy + Delta-G solvation = -3095.682184 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.42408 -39.37048 -36.31808 -35.00133 -32.62356 -31.51207 -31.01588 -27.79894 -27.39217 -25.77471 -23.73155 -22.57793 -21.33813 -19.83656 -19.58159 -18.09652 -16.84444 -16.63974 -16.36202 -15.87746 -15.02199 -14.79160 -14.57513 -14.10403 -13.82961 -13.61415 -13.09686 -12.88927 -12.66054 -12.61524 -12.29884 -12.20497 -11.50448 -11.39723 -11.18556 -10.88578 -10.79478 -10.69824 -10.08594 -10.02026 -9.74434 -9.71200 -9.61734 -9.20517 -9.16701 -8.41030 -8.22495 -7.41435 -6.03740 -4.08731 0.76653 1.18575 1.93126 2.34789 2.61113 2.97838 3.30943 3.35634 3.39438 4.38645 4.42139 4.83256 5.11041 5.15494 5.25251 5.27405 5.43750 5.56806 5.65574 5.66776 5.85129 5.92624 6.11413 6.13264 6.25645 6.35920 6.77104 6.87788 6.96230 7.06350 7.33956 7.69865 7.77653 7.82913 7.89826 8.11940 8.29385 8.60050 8.98847 9.56912 11.01468 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.025610 B = 0.003577 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.060545 B = 7824.921470 C = 8410.034275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.221 3.779 4 H 0.006 0.994 5 C -0.499 4.499 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.670 5.670 14 C 0.060 3.940 15 C 0.511 3.489 16 O -0.486 6.486 17 N -0.630 5.630 18 C 0.254 3.746 19 N -0.522 5.522 20 C 0.088 3.912 21 C -0.076 4.076 22 C -0.333 4.333 23 S 0.243 5.757 24 H 0.043 0.957 25 H 0.035 0.965 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.102 0.898 29 H 0.261 0.739 30 H 0.329 0.671 31 H 0.114 0.886 32 H 0.056 0.944 33 H 0.423 0.577 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.536 12.271 -10.958 18.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C 0.114 3.886 4 H 0.024 0.976 5 C -0.538 4.538 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.303 5.303 14 C -0.073 4.073 15 C 0.298 3.702 16 O -0.357 6.357 17 N -0.281 5.281 18 C -0.114 4.114 19 N -0.247 5.247 20 C -0.044 4.044 21 C -0.135 4.135 22 C -0.474 4.474 23 S 0.493 5.507 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.120 0.880 29 H 0.071 0.929 30 H 0.147 0.853 31 H 0.132 0.868 32 H 0.074 0.926 33 H 0.262 0.738 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -6.793 10.876 -11.452 17.192 hybrid contribution 0.111 1.303 0.928 1.603 sum -6.682 12.178 -10.524 17.427 Atomic orbital electron populations 1.21896 0.99508 0.99837 0.99668 1.21780 0.91309 0.99995 1.03393 1.19207 0.95728 0.90227 0.83399 0.97627 1.21174 0.91085 1.37199 1.04360 0.91964 1.24950 0.98232 0.95420 0.95768 1.69852 1.34906 1.39178 1.09539 0.86582 0.85545 0.78199 0.77202 1.20391 1.21427 1.20228 1.60424 1.38585 0.98773 1.32557 1.21687 1.03052 0.93133 0.89447 1.21866 0.74820 0.79652 0.93824 1.90612 1.46852 1.61020 1.37265 1.43191 1.69644 1.08600 1.06711 1.23518 1.01989 0.92177 0.93675 1.66180 1.22686 1.12230 1.23561 1.19783 1.00693 0.97740 0.86203 1.20326 1.02330 0.89084 1.01803 1.27212 1.17002 0.97869 1.05292 1.85073 1.65333 1.05202 0.95117 0.93815 0.94589 0.94204 0.93762 0.87984 0.92896 0.85261 0.86776 0.92616 0.73837 0.90849 0.90870 0.90855 0.81117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.77 37.16 0.36 -2.45 16 2 C -0.13 -2.86 5.35 -26.73 -0.14 -3.00 16 3 C 0.22 5.18 2.02 -68.87 -0.14 5.04 16 4 H 0.01 0.15 7.83 -51.93 -0.41 -0.25 16 5 C -0.50 -13.19 8.64 -34.44 -0.30 -13.49 16 6 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 7 C 0.06 1.52 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -24.50 11.29 55.43 0.63 -23.87 16 9 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.67 -13.61 5.83 -109.22 -0.64 -14.24 16 14 C 0.06 0.99 5.93 -4.98 -0.03 0.96 16 15 C 0.51 8.02 7.84 -10.98 -0.09 7.94 16 16 O -0.49 -8.86 13.79 5.56 0.08 -8.79 16 17 N -0.63 -8.46 5.40 -13.07 -0.07 -8.53 16 18 C 0.25 3.68 8.19 -87.35 -0.72 2.97 16 19 N -0.52 -7.46 10.58 -11.28 -0.12 -7.58 16 20 C 0.09 1.09 6.74 -84.20 -0.57 0.52 16 21 C -0.08 -0.65 10.31 36.00 0.37 -0.28 16 22 C -0.33 -3.84 11.11 29.06 0.32 -3.52 16 23 S 0.24 3.32 20.22 -107.50 -2.17 1.15 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.04 0.61 6.45 -51.93 -0.33 0.27 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.10 2.60 5.94 -51.93 -0.31 2.29 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.33 6.34 6.39 -39.29 -0.25 6.09 16 31 H 0.11 1.92 7.99 -51.93 -0.42 1.50 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.42 4.54 8.82 -40.82 -0.36 4.18 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.17 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 323.72 15.07 4.88 4.88 Total: -1.00 -29.95 323.72 -8.46 -38.40 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.00 Total: 6.57 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -1.02 Total: -3.90 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.20 Total: -54.22 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.08 Total: -8.79 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -2.17 Total: 1.15 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.95 -8.46 -38.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594010452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.731 kcal (2) G-P(sol) polarization free energy of solvation -29.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds