Wall clock time and date at job start Fri Apr 10 2020 15:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47594 * 2 1 4 4 H 1.09006 * 109.46855 * 54.36004 * 3 2 1 5 5 C 1.50700 * 109.47485 * 174.35994 * 3 2 1 6 6 H 1.08003 * 119.99677 * 119.99659 * 5 3 2 7 7 C 1.37875 * 120.00175 * 300.00350 * 5 3 2 8 8 N 1.31514 * 119.99859 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00172 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47238 * 59.99907 * 9 7 5 11 11 H 1.48492 * 109.47465 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46994 * 300.00232 * 9 7 5 13 13 N 1.46901 * 109.47339 * 294.36433 * 3 2 1 14 14 C 1.46895 * 111.00135 * 152.94134 * 13 3 2 15 15 C 1.50703 * 109.47093 * 174.67948 * 14 13 3 16 16 O 1.21280 * 119.99813 * 359.97438 * 15 14 13 17 17 N 1.34783 * 120.00217 * 180.02562 * 15 14 13 18 18 C 1.38994 * 119.99918 * 179.97438 * 17 15 14 19 19 N 1.29628 * 124.94141 * 179.97438 * 18 17 15 20 20 C 1.31984 * 116.91853 * 180.02562 * 19 18 17 21 21 C 1.50696 * 122.71678 * 179.97438 * 20 19 18 22 22 C 1.33448 * 114.56812 * 359.97438 * 20 19 18 23 23 S 1.70965 * 124.94950 * 0.02562 * 18 17 15 24 24 H 1.09000 * 109.47186 * 299.31612 * 1 2 3 25 25 H 1.09002 * 109.46994 * 59.31451 * 1 2 3 26 26 H 1.08995 * 109.47751 * 179.31054 * 1 2 3 27 27 H 1.09000 * 109.47044 * 240.00174 * 2 1 3 28 28 H 1.09003 * 109.46801 * 120.00254 * 2 1 3 29 29 H 0.97000 * 120.00196 * 180.02562 * 8 7 5 30 30 H 1.00909 * 111.00062 * 28.98933 * 13 3 2 31 31 H 1.08998 * 109.47524 * 54.67726 * 14 13 3 32 32 H 1.09002 * 109.47550 * 294.67247 * 14 13 3 33 33 H 0.96999 * 119.99524 * 359.97438 * 17 15 14 34 34 H 1.09005 * 109.46907 * 90.02900 * 21 20 19 35 35 H 1.09007 * 109.47424 * 210.02263 * 21 20 19 36 36 H 1.08997 * 109.47417 * 330.02328 * 21 20 19 37 37 H 1.08003 * 125.96654 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5966 1.9846 0.8352 5 6 3.5406 1.4447 0.1396 6 1 4.1540 1.8863 -0.6318 7 6 4.1303 0.8829 1.2521 8 7 3.3833 0.3454 2.1916 9 14 5.9902 0.8850 1.4248 10 1 6.4858 2.2850 1.4245 11 1 6.3698 0.2254 2.6999 12 1 6.5939 0.1460 0.2869 13 7 1.6647 2.0946 -1.2616 14 6 1.5366 3.5473 -1.0855 15 6 1.2803 4.1947 -2.4221 16 8 1.2116 3.5130 -3.4228 17 7 1.1285 5.5313 -2.5055 18 6 0.8926 6.1284 -3.7383 19 7 0.7320 7.4006 -3.9285 20 6 0.5157 7.7966 -5.1688 21 6 0.3111 9.2433 -5.5378 22 6 0.4930 6.8123 -6.0696 23 16 0.7708 5.2919 -5.2243 24 1 -0.3633 0.5032 0.8960 25 1 -0.3633 0.5245 -0.8838 26 1 -0.3634 -1.0275 -0.0124 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.7981 -0.0495 2.9744 30 1 0.8143 1.6992 -1.6341 31 1 2.4583 3.9445 -0.6603 32 1 0.7052 3.7601 -0.4135 33 1 1.1838 6.0766 -1.7051 34 1 1.2738 9.6989 -5.7697 35 1 -0.3404 9.3073 -6.4095 36 1 -0.1483 9.7702 -4.7015 37 1 0.3319 6.9277 -7.1313 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594010452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:33 Heat of formation + Delta-G solvation = -8.969708 kcal Electronic energy + Delta-G solvation = -19530.563099 eV Core-core repulsion = 16434.000799 eV Total energy + Delta-G solvation = -3096.562300 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.58176 -40.45968 -38.00964 -36.16165 -34.46021 -33.02634 -32.12876 -29.23831 -28.43878 -27.38456 -25.05140 -24.15643 -22.50452 -21.52195 -20.74700 -19.20270 -18.40230 -17.97936 -17.66654 -17.17178 -16.65738 -16.35435 -15.79759 -15.46975 -15.11612 -14.93710 -14.42800 -14.05869 -13.91992 -13.80355 -13.53645 -13.28436 -13.12284 -12.97542 -12.76718 -12.53397 -12.36313 -11.97134 -11.83766 -11.68282 -11.49797 -11.08946 -10.95340 -10.79172 -10.41294 -10.21987 -9.24111 -9.06254 -8.05961 -6.17608 -0.27002 0.15993 0.95196 1.20284 1.43990 1.46089 1.48124 1.53289 1.92977 2.45514 3.19715 3.40927 3.65263 3.69713 4.34105 4.34653 4.43940 4.48862 4.56287 4.58488 4.72749 4.75239 4.82667 4.89860 4.98408 5.10015 5.21587 5.35926 5.40814 5.55257 5.74395 5.85514 5.88440 6.32741 6.44294 6.72177 6.76940 6.89394 6.94626 7.51408 8.96778 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.025610 B = 0.003577 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.060545 B = 7824.921470 C = 8410.034275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C 0.229 3.771 4 H -0.012 1.012 5 C -0.516 4.516 6 H 0.049 0.951 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.952 3.048 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.278 1.278 13 N -0.680 5.680 14 C 0.061 3.939 15 C 0.520 3.480 16 O -0.514 6.514 17 N -0.618 5.618 18 C 0.232 3.768 19 N -0.531 5.531 20 C 0.068 3.932 21 C -0.073 4.073 22 C -0.314 4.314 23 S 0.214 5.786 24 H 0.043 0.957 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.033 0.967 28 H 0.072 0.928 29 H 0.261 0.739 30 H 0.335 0.665 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.434 0.566 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.037 13.683 -12.050 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.162 4.162 3 C 0.121 3.879 4 H 0.006 0.994 5 C -0.554 4.554 6 H 0.067 0.933 7 C -0.184 4.184 8 N -0.556 5.556 9 Si 0.778 3.222 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.204 1.204 13 N -0.314 5.314 14 C -0.071 4.071 15 C 0.308 3.692 16 O -0.388 6.388 17 N -0.270 5.270 18 C -0.135 4.135 19 N -0.256 5.256 20 C -0.064 4.064 21 C -0.132 4.132 22 C -0.454 4.454 23 S 0.464 5.536 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.154 0.846 31 H 0.127 0.873 32 H 0.099 0.901 33 H 0.275 0.725 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.090 0.910 37 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -7.305 12.337 -12.546 19.052 hybrid contribution 0.238 0.956 1.187 1.542 sum -7.067 13.292 -11.360 18.859 Atomic orbital electron populations 1.21761 0.96218 1.01306 1.00496 1.21622 0.94275 0.99004 1.01285 1.18955 0.94117 0.90753 0.84059 0.99450 1.21439 0.92803 1.37106 1.04088 0.93256 1.25593 1.01897 0.95241 0.95624 1.69966 1.36197 1.39647 1.09800 0.85713 0.81174 0.78305 0.76997 1.19754 1.21005 1.20411 1.60230 1.39320 1.00862 1.30984 1.21659 1.03890 0.90995 0.90574 1.21506 0.74609 0.80219 0.92912 1.90612 1.48319 1.61939 1.37889 1.42890 1.68967 1.07906 1.07212 1.23652 1.03430 0.92498 0.93889 1.66225 1.22409 1.12064 1.24888 1.20430 1.00682 0.99640 0.85607 1.20442 1.03456 0.86602 1.02727 1.27516 1.15263 0.96030 1.06570 1.85142 1.65622 1.07104 0.95739 0.93803 0.92819 0.92481 0.94850 0.90981 0.92975 0.84591 0.87278 0.90057 0.72486 0.89833 0.88415 0.90979 0.78010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 9.77 71.98 0.70 -4.35 16 2 C -0.12 -5.62 5.35 30.59 0.16 -5.46 16 3 C 0.23 10.82 2.02 44.17 0.09 10.90 16 4 H -0.01 -0.60 7.83 -2.38 -0.02 -0.62 16 5 C -0.52 -27.60 8.64 25.60 0.22 -27.38 16 6 H 0.05 2.71 7.81 -2.91 -0.02 2.68 16 7 C 0.02 0.82 5.29 84.65 0.45 1.26 16 8 N -0.92 -50.72 11.29 21.45 0.24 -50.48 16 9 Si 0.95 43.11 29.54 68.60 2.03 45.13 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 N -0.68 -27.54 5.83 -499.47 -2.91 -30.45 16 14 C 0.06 1.99 5.93 85.56 0.51 2.50 16 15 C 0.52 16.08 7.84 87.66 0.69 16.76 16 16 O -0.51 -18.65 13.79 -3.03 -0.04 -18.69 16 17 N -0.62 -16.14 5.40 -313.64 -1.69 -17.84 16 18 C 0.23 6.54 8.19 179.21 1.47 8.01 16 19 N -0.53 -14.45 10.58 -189.60 -2.01 -16.46 16 20 C 0.07 1.52 6.74 41.45 0.28 1.80 16 21 C -0.07 -1.05 10.31 71.23 0.73 -0.32 16 22 C -0.31 -6.49 11.11 66.73 0.74 -5.75 16 23 S 0.21 5.69 20.22 -56.49 -1.14 4.55 16 24 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.05 1.73 6.45 -2.39 -0.02 1.71 16 26 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 3.74 5.94 -2.39 -0.01 3.73 16 29 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 30 H 0.33 12.70 6.39 -89.69 -0.57 12.13 16 31 H 0.11 3.66 7.99 -2.39 -0.02 3.64 16 32 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.43 8.94 8.82 -92.71 -0.82 8.13 16 34 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.10 0.92 8.12 -2.38 -0.02 0.90 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.20 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -64.22 323.72 0.22 -64.00 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -0.29 Total: 22.24 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 6.04 Total: -2.01 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -6.37 Total: -115.23 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.04 Total: -18.69 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 5.69 SS G_CDS: -1.14 Total: 4.55 kcal Total: -64.22 0.22 -64.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594010452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.033 kcal (2) G-P(sol) polarization free energy of solvation -64.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds