Wall clock time and date at job start Fri Apr 10 2020 15:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47078 * 2 1 4 4 H 1.08997 * 109.47058 * 185.15565 * 3 2 1 5 5 C 1.50699 * 109.47528 * 305.16133 * 3 2 1 6 6 H 1.08005 * 120.00108 * 119.99436 * 5 3 2 7 7 C 1.37879 * 120.00040 * 300.00123 * 5 3 2 8 8 N 1.31517 * 119.99797 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99988 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47254 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46881 * 120.00020 * 9 7 5 12 12 H 1.48507 * 109.46855 * 239.99772 * 9 7 5 13 13 N 1.46911 * 109.47065 * 65.16172 * 3 2 1 14 14 C 1.46899 * 110.99594 * 85.89565 * 13 3 2 15 15 C 1.53000 * 109.46630 * 174.83265 * 14 13 3 16 16 H 1.09000 * 109.47720 * 60.00124 * 15 14 13 17 17 O 1.42909 * 109.47345 * 300.00272 * 15 14 13 18 18 C 1.50703 * 109.47269 * 180.02562 * 15 14 13 19 19 C 1.38239 * 119.98916 * 84.72644 * 18 15 14 20 20 C 1.38213 * 120.01054 * 179.72910 * 19 18 15 21 21 C 1.38350 * 119.98825 * 0.54381 * 20 19 18 22 22 Cl 1.73597 * 120.01521 * 179.70139 * 21 20 19 23 23 C 1.38356 * 119.97262 * 359.72833 * 21 20 19 24 24 C 1.38209 * 119.98832 * 0.02562 * 23 21 20 25 25 H 1.08995 * 109.47179 * 174.84596 * 1 2 3 26 26 H 1.09004 * 109.47107 * 54.84654 * 1 2 3 27 27 H 1.09005 * 109.47108 * 294.84959 * 1 2 3 28 28 H 1.08993 * 109.47194 * 120.00032 * 2 1 3 29 29 H 1.09004 * 109.46963 * 240.00536 * 2 1 3 30 30 H 0.96998 * 119.99897 * 180.02562 * 8 7 5 31 31 H 1.00900 * 110.99866 * 321.94680 * 13 3 2 32 32 H 1.08995 * 109.47219 * 294.82965 * 14 13 3 33 33 H 1.08999 * 109.47280 * 54.83642 * 14 13 3 34 34 H 0.96701 * 113.99650 * 300.00132 * 17 15 14 35 35 H 1.08003 * 119.98993 * 0.02562 * 19 18 15 36 36 H 1.08005 * 120.00458 * 180.26925 * 20 19 18 37 37 H 1.07999 * 120.00511 * 179.97438 * 23 21 20 38 38 H 1.07993 * 119.99610 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0923 5 6 1.4361 2.1890 -1.1615 6 1 0.8269 3.0629 -0.9838 7 6 1.6611 1.7561 -2.4511 8 7 2.4033 0.6922 -2.6675 9 14 0.9119 2.6809 -3.8908 10 1 0.1248 3.8333 -3.3833 11 1 1.9946 3.1735 -4.7800 12 1 0.0204 1.7707 -4.6538 13 7 1.6547 2.0981 1.2570 14 6 2.6432 1.8366 2.3116 15 6 2.2775 2.6370 3.5632 16 1 1.2884 2.3376 3.9099 17 8 2.2709 4.0317 3.2516 18 6 3.2919 2.3693 4.6450 19 6 4.4698 3.0919 4.6819 20 6 5.3980 2.8505 5.6771 21 6 5.1531 1.8779 6.6300 22 17 6.3219 1.5688 7.8758 23 6 3.9765 1.1511 6.5893 24 6 3.0468 1.3968 5.5966 25 1 -0.3633 -1.0235 -0.0923 26 1 -0.3633 0.5917 -0.8403 27 1 -0.3633 0.4319 0.9326 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 2.5619 0.3879 -3.5748 31 1 0.7320 1.8104 1.5468 32 1 2.6482 0.7729 2.5492 33 1 3.6323 2.1361 1.9650 34 1 3.1207 4.3682 2.9359 35 1 4.6627 3.8484 3.9356 36 1 6.3164 3.4182 5.7084 37 1 3.7849 0.3914 7.3326 38 1 2.1281 0.8299 5.5649 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846984476.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:45 Heat of formation + Delta-G solvation = -58.604968 kcal Electronic energy + Delta-G solvation = -19746.247395 eV Core-core repulsion = 16613.196291 eV Total energy + Delta-G solvation = -3133.051104 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.75425 -38.73942 -37.66750 -37.03991 -34.38514 -32.85586 -32.03681 -31.81651 -29.00320 -27.27643 -25.15176 -24.08612 -23.72728 -21.99455 -21.20411 -18.69375 -18.23333 -17.31548 -16.99430 -16.78105 -16.18758 -15.98802 -15.38867 -15.27973 -14.78925 -14.58065 -14.42009 -14.29548 -14.20803 -13.64886 -13.36987 -12.99239 -12.84701 -12.67603 -12.58599 -12.46710 -12.41330 -11.97573 -11.90134 -11.75767 -11.66399 -11.42114 -11.12226 -10.78624 -10.42121 -10.03049 -9.58305 -8.86380 -8.04163 -6.11885 0.08378 0.30437 1.12697 1.42380 1.45784 1.56885 2.46777 2.57602 3.24824 3.40135 3.59800 3.77906 3.92553 4.10126 4.12080 4.25159 4.38570 4.43821 4.56363 4.61948 4.68685 4.73035 4.79938 4.90962 5.01809 5.11447 5.19055 5.22197 5.37895 5.44231 5.54298 5.72238 5.76267 5.78092 5.85708 6.34135 6.69838 6.79504 6.92839 7.02236 7.56045 9.01241 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.031276 B = 0.003204 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.046088 B = 8736.313313 C = 8870.314733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.140 4.140 3 C 0.222 3.778 4 H -0.004 1.004 5 C -0.496 4.496 6 H 0.051 0.949 7 C 0.013 3.987 8 N -0.921 5.921 9 Si 0.949 3.051 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.282 1.282 13 N -0.678 5.678 14 C 0.039 3.961 15 C 0.163 3.837 16 H 0.109 0.891 17 O -0.555 6.555 18 C -0.114 4.114 19 C -0.105 4.105 20 C -0.112 4.112 21 C -0.048 4.048 22 Cl -0.072 7.072 23 C -0.112 4.112 24 C -0.103 4.103 25 H 0.041 0.959 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.025 0.975 29 H 0.060 0.940 30 H 0.258 0.742 31 H 0.332 0.668 32 H 0.029 0.971 33 H 0.058 0.942 34 H 0.381 0.619 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.025 0.967 18.961 19.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.179 4.179 3 C 0.114 3.886 4 H 0.014 0.986 5 C -0.535 4.535 6 H 0.070 0.930 7 C -0.185 4.185 8 N -0.562 5.562 9 Si 0.776 3.224 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.209 1.209 13 N -0.309 5.309 14 C -0.091 4.091 15 C 0.103 3.897 16 H 0.127 0.873 17 O -0.361 6.361 18 C -0.115 4.115 19 C -0.123 4.123 20 C -0.131 4.131 21 C -0.074 4.074 22 Cl -0.043 7.043 23 C -0.131 4.131 24 C -0.121 4.121 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.151 0.849 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.230 0.770 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.168 0.832 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.854 1.407 18.937 19.376 hybrid contribution 0.467 -0.767 -0.961 1.315 sum 4.320 0.641 17.976 18.499 Atomic orbital electron populations 1.21487 0.95875 0.99583 1.00960 1.21963 0.96570 1.00058 0.99338 1.18958 0.93476 0.89350 0.86849 0.98614 1.21323 1.30097 1.11217 0.90834 0.93024 1.25582 0.96020 0.95906 1.01024 1.70017 1.40120 1.25175 1.20911 0.85630 0.78203 0.78848 0.79695 1.19397 1.21098 1.20852 1.60589 1.04479 1.62798 1.03042 1.22570 0.96689 0.97457 0.92361 1.20685 0.97522 0.81746 0.89704 0.87346 1.86591 1.39235 1.22644 1.87669 1.20762 0.96369 0.97129 0.97223 1.21100 0.92734 0.99902 0.98571 1.21221 1.00749 0.97386 0.93727 1.21122 0.92710 1.00071 0.93503 1.98366 1.58276 1.95218 1.52453 1.21257 0.92201 0.99948 0.99676 1.21205 1.00234 0.97202 0.93452 0.93990 0.93679 0.93030 0.95588 0.92158 0.93290 0.84891 0.95271 0.92367 0.77024 0.83845 0.83409 0.83179 0.83328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 9.40 71.98 0.68 -4.26 16 2 C -0.14 -6.37 5.51 30.60 0.17 -6.20 16 3 C 0.22 10.79 2.33 44.17 0.10 10.90 16 4 H 0.00 -0.22 7.70 -2.39 -0.02 -0.24 16 5 C -0.50 -26.69 7.25 25.60 0.19 -26.51 16 6 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 7 C 0.01 0.69 5.28 84.65 0.45 1.13 16 8 N -0.92 -52.24 11.38 21.45 0.24 -52.00 16 9 Si 0.95 43.64 29.54 68.60 2.03 45.67 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 N -0.68 -27.11 6.07 -495.43 -3.01 -30.12 16 14 C 0.04 1.27 5.15 86.30 0.44 1.72 16 15 C 0.16 4.24 3.46 29.85 0.10 4.34 16 16 H 0.11 2.68 8.05 -2.39 -0.02 2.66 16 17 O -0.55 -15.78 13.00 -148.98 -1.94 -17.72 16 18 C -0.11 -2.53 5.00 -19.86 -0.10 -2.63 16 19 C -0.10 -2.14 9.33 22.26 0.21 -1.94 16 20 C -0.11 -2.14 9.83 22.29 0.22 -1.93 16 21 C -0.05 -0.93 6.32 22.32 0.14 -0.78 16 22 Cl -0.07 -1.29 28.96 -2.72 -0.08 -1.37 16 23 C -0.11 -2.07 9.83 22.29 0.22 -1.85 16 24 C -0.10 -2.01 9.68 22.27 0.22 -1.79 16 25 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.04 2.04 6.85 -2.38 -0.02 2.03 16 27 H 0.05 1.82 6.63 -2.38 -0.02 1.80 16 28 H 0.03 1.07 7.50 -2.39 -0.02 1.05 16 29 H 0.06 3.17 6.23 -2.39 -0.01 3.15 16 30 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 31 H 0.33 12.58 6.70 -89.69 -0.60 11.98 16 32 H 0.03 0.93 7.53 -2.39 -0.02 0.92 16 33 H 0.06 1.99 7.93 -2.39 -0.02 1.97 16 34 H 0.38 8.86 7.39 -74.06 -0.55 8.31 16 35 H 0.14 2.49 6.62 -2.91 -0.02 2.47 16 36 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 37 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -60.93 326.23 0.21 -60.72 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: -0.07 Total: 24.61 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 3.03 Total: -29.79 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -2.77 Total: -82.12 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -1.94 Total: -17.72 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -60.93 0.21 -60.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846984476.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.119 kcal (2) G-P(sol) polarization free energy of solvation -60.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds