Wall clock time and date at job start Fri Apr 10 2020 15:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47002 * 2 1 4 4 H 1.08998 * 109.46744 * 179.25851 * 3 2 1 5 5 C 1.50701 * 109.46801 * 299.25867 * 3 2 1 6 6 H 1.08000 * 119.99694 * 120.00230 * 5 3 2 7 7 C 1.37869 * 120.00310 * 299.99568 * 5 3 2 8 8 N 1.31514 * 120.00332 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 120.00049 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47175 * 89.99357 * 9 7 5 11 11 H 1.48500 * 109.47307 * 209.99769 * 9 7 5 12 12 H 1.48501 * 109.47118 * 329.99898 * 9 7 5 13 13 N 1.46904 * 109.47101 * 59.25862 * 3 2 1 14 14 C 1.46899 * 110.99567 * 85.93782 * 13 3 2 15 15 C 1.53000 * 109.46630 * 175.55235 * 14 13 3 16 16 H 1.09006 * 109.47122 * 305.00479 * 15 14 13 17 17 O 1.42897 * 109.47280 * 65.00139 * 15 14 13 18 18 C 1.50694 * 109.47250 * 185.00228 * 15 14 13 19 19 C 1.38261 * 119.99332 * 279.72297 * 18 15 14 20 20 C 1.38222 * 120.02954 * 179.76615 * 19 18 15 21 21 C 1.38246 * 120.01195 * 0.50960 * 20 19 18 22 22 C 1.38332 * 119.98459 * 359.74682 * 21 20 19 23 23 Cl 1.73596 * 120.01550 * 180.02562 * 22 21 20 24 24 C 1.38200 * 119.99485 * 99.99897 * 18 15 14 25 25 H 1.09004 * 109.46849 * 175.55999 * 1 2 3 26 26 H 1.09002 * 109.47004 * 55.56255 * 1 2 3 27 27 H 1.08999 * 109.47571 * 295.55741 * 1 2 3 28 28 H 1.08998 * 109.47221 * 119.99585 * 2 1 3 29 29 H 1.09004 * 109.47415 * 239.99892 * 2 1 3 30 30 H 0.97002 * 120.00033 * 179.97438 * 8 7 5 31 31 H 1.00896 * 110.99507 * 209.89683 * 13 3 2 32 32 H 1.08995 * 109.47219 * 295.54936 * 14 13 3 33 33 H 1.08999 * 109.47280 * 55.55612 * 14 13 3 34 34 H 0.96703 * 114.00320 * 59.99934 * 17 15 14 35 35 H 1.08001 * 119.98807 * 0.02562 * 19 18 15 36 36 H 1.08004 * 119.99954 * 180.25783 * 20 19 18 37 37 H 1.07997 * 120.01012 * 179.72570 * 21 20 19 38 38 H 1.07998 * 120.00661 * 0.02562 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1298 1.4425 0.0133 5 6 1.5526 2.1476 -1.2396 6 1 0.9306 3.0260 -1.1518 7 6 1.9010 1.6712 -2.4856 8 7 1.4761 2.2867 -3.5673 9 14 2.9765 0.1514 -2.6374 10 1 2.1182 -1.0594 -2.6882 11 1 3.7838 0.2384 -3.8807 12 1 3.8825 0.0669 -1.4638 13 7 1.5357 2.1402 1.1904 14 6 2.4174 1.9174 2.3440 15 6 1.9228 2.7459 3.5314 16 1 1.8474 3.7930 3.2376 17 8 0.6381 2.2724 3.9404 18 6 2.8945 2.6140 4.6756 19 6 2.8558 1.4973 5.4899 20 6 3.7499 1.3732 6.5367 21 6 4.6766 2.3707 6.7765 22 6 4.7123 3.4906 5.9653 23 17 5.8760 4.7433 6.2653 24 6 3.8204 3.6118 4.9143 25 1 -0.3633 -1.0246 -0.0796 26 1 -0.3633 0.5812 -0.8476 27 1 -0.3634 0.4433 0.9271 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.7215 1.9518 -4.4440 31 1 1.4189 3.1259 1.0094 32 1 2.4081 0.8604 2.6096 33 1 3.4332 2.2190 2.0886 34 1 0.6300 1.3456 4.2162 35 1 2.1294 0.7196 5.3055 36 1 3.7219 0.4987 7.1699 37 1 5.3722 2.2757 7.5971 38 1 3.8473 4.4863 4.2811 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846993521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:58 Heat of formation + Delta-G solvation = -33.775573 kcal Electronic energy + Delta-G solvation = -19890.343303 eV Core-core repulsion = 16758.368883 eV Total energy + Delta-G solvation = -3131.974420 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.93998 -37.58477 -36.59344 -35.89910 -32.70953 -31.85833 -31.10313 -30.83315 -27.84198 -25.92549 -23.15228 -23.09002 -22.88884 -21.09726 -19.40260 -17.79782 -16.76488 -16.20369 -16.02171 -15.65763 -15.25924 -14.56910 -14.24625 -13.92006 -13.88514 -13.55426 -13.38863 -13.14628 -12.71607 -12.25234 -12.08689 -11.87088 -11.81103 -11.65248 -11.31257 -11.10864 -10.93951 -10.74549 -10.58055 -10.25083 -10.07291 -9.83583 -9.34066 -9.13296 -8.98759 -8.87928 -8.58826 -7.49661 -6.11547 -4.10524 0.89327 0.99520 1.88351 3.25310 3.34074 3.34376 3.36284 4.31073 4.36770 4.51006 4.55988 4.76469 4.91916 5.04272 5.18556 5.20311 5.29625 5.34274 5.53356 5.62431 5.91718 5.95401 6.00026 6.06311 6.15102 6.20898 6.33656 6.46390 6.51845 6.69910 6.89355 7.09921 7.22019 7.48774 7.58377 7.71051 7.88522 8.30395 8.58460 8.93305 9.50839 11.01262 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.022279 B = 0.003835 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.505006 B = 7298.487206 C = 7777.193604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.111 4.111 3 C 0.185 3.815 4 H -0.001 1.001 5 C -0.514 4.514 6 H 0.079 0.921 7 C 0.074 3.926 8 N -0.897 5.897 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.270 1.270 13 N -0.665 5.665 14 C 0.033 3.967 15 C 0.150 3.850 16 H 0.108 0.892 17 O -0.538 6.538 18 C -0.094 4.094 19 C -0.107 4.107 20 C -0.105 4.105 21 C -0.116 4.116 22 C -0.032 4.032 23 Cl -0.073 7.073 24 C -0.101 4.101 25 H 0.019 0.981 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.028 0.972 29 H 0.040 0.960 30 H 0.264 0.736 31 H 0.340 0.660 32 H 0.068 0.932 33 H 0.031 0.969 34 H 0.370 0.630 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.787 -1.139 20.787 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.149 4.149 3 C 0.076 3.924 4 H 0.017 0.983 5 C -0.552 4.552 6 H 0.097 0.903 7 C -0.128 4.128 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.195 1.195 13 N -0.297 5.297 14 C -0.097 4.097 15 C 0.090 3.910 16 H 0.125 0.875 17 O -0.343 6.343 18 C -0.096 4.096 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.135 4.135 22 C -0.059 4.059 23 Cl -0.044 7.044 24 C -0.120 4.120 25 H 0.038 0.962 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.159 0.841 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.217 0.783 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.282 -0.910 20.623 21.308 hybrid contribution 1.813 -0.823 -0.317 2.016 sum 7.095 -1.733 20.306 21.580 Atomic orbital electron populations 1.21470 0.95413 0.98253 1.03094 1.21733 0.97494 0.98098 0.97608 1.19605 0.92710 0.91390 0.88712 0.98348 1.21021 1.32473 1.13321 0.88401 0.90281 1.24886 0.95481 0.96727 0.95747 1.69886 1.45356 1.40437 0.97838 0.86872 0.80817 0.83861 0.76759 1.20369 1.22550 1.19524 1.60455 1.48137 1.16612 1.04468 1.22640 0.95135 0.99605 0.92363 1.20892 0.81303 0.99646 0.89158 0.87474 1.86658 1.28925 1.31386 1.87341 1.20698 0.97058 0.94085 0.97723 1.21035 0.98994 0.97430 0.95047 1.21085 0.94860 0.98582 0.97767 1.21051 0.99918 0.92841 0.99667 1.20911 0.94578 0.91810 0.98552 1.98374 1.58137 1.52370 1.95545 1.20945 0.94575 0.99769 0.96694 0.96208 0.91364 0.92486 0.95337 0.94177 0.92588 0.84129 0.91393 0.95100 0.78301 0.85342 0.84989 0.85061 0.84690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.52 37.16 0.35 -2.25 16 2 C -0.11 -2.42 5.29 -26.73 -0.14 -2.56 16 3 C 0.18 4.22 1.90 -68.86 -0.13 4.09 16 4 H 0.00 -0.02 6.77 -51.93 -0.35 -0.37 16 5 C -0.51 -13.88 7.87 -34.44 -0.27 -14.15 16 6 H 0.08 2.32 7.85 -52.49 -0.41 1.90 16 7 C 0.07 2.08 5.45 -17.82 -0.10 1.99 16 8 N -0.90 -26.91 13.96 55.43 0.77 -26.14 16 9 Si 0.89 21.85 24.38 -169.99 -4.14 17.71 16 10 H -0.28 -6.69 6.86 56.52 0.39 -6.31 16 11 H -0.30 -7.37 7.11 56.52 0.40 -6.96 16 12 H -0.27 -6.44 6.53 56.52 0.37 -6.07 16 13 N -0.67 -12.77 5.57 -107.95 -0.60 -13.37 16 14 C 0.03 0.51 5.15 -3.82 -0.02 0.49 16 15 C 0.15 1.93 3.35 -27.89 -0.09 1.84 16 16 H 0.11 1.40 7.99 -51.93 -0.41 0.98 16 17 O -0.54 -7.22 13.13 -35.23 -0.46 -7.69 16 18 C -0.09 -1.07 4.97 -104.63 -0.52 -1.59 16 19 C -0.11 -1.04 9.32 -39.58 -0.37 -1.41 16 20 C -0.10 -0.91 10.05 -39.58 -0.40 -1.31 16 21 C -0.12 -1.08 9.83 -39.54 -0.39 -1.47 16 22 C -0.03 -0.34 6.32 -39.49 -0.25 -0.59 16 23 Cl -0.07 -0.75 28.96 -51.86 -1.50 -2.25 16 24 C -0.10 -1.14 9.45 -39.54 -0.37 -1.51 16 25 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 1.60 7.09 -51.93 -0.37 1.24 16 27 H 0.06 1.13 7.73 -51.93 -0.40 0.72 16 28 H 0.03 0.55 7.62 -51.93 -0.40 0.16 16 29 H 0.04 0.93 3.26 -51.93 -0.17 0.76 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.34 6.65 8.13 -39.29 -0.32 6.33 16 32 H 0.07 1.02 7.62 -51.93 -0.40 0.62 16 33 H 0.03 0.50 7.94 -51.93 -0.41 0.09 16 34 H 0.37 3.79 7.50 45.56 0.34 4.13 16 35 H 0.13 1.01 6.78 -52.49 -0.36 0.65 16 36 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 37 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.14 1.42 8.04 -52.49 -0.42 1.00 16 LS Contribution 321.84 15.07 4.85 4.85 Total: -1.00 -30.13 321.84 -8.31 -38.44 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -4.53 Total: 6.89 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -2.70 Total: -18.45 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.17 Total: -39.51 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.46 Total: -7.69 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.14 Total: 17.71 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.13 -8.31 -38.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846993521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.663 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds