Wall clock time and date at job start Fri Apr 10 2020 15:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47002 * 2 1 4 4 H 1.08998 * 109.46744 * 179.25851 * 3 2 1 5 5 C 1.50701 * 109.46801 * 299.25867 * 3 2 1 6 6 H 1.08000 * 119.99694 * 120.00230 * 5 3 2 7 7 C 1.37869 * 120.00310 * 299.99568 * 5 3 2 8 8 N 1.31514 * 120.00332 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 120.00049 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47175 * 89.99357 * 9 7 5 11 11 H 1.48500 * 109.47307 * 209.99769 * 9 7 5 12 12 H 1.48501 * 109.47118 * 329.99898 * 9 7 5 13 13 N 1.46904 * 109.47101 * 59.25862 * 3 2 1 14 14 C 1.46899 * 110.99567 * 85.93782 * 13 3 2 15 15 C 1.53000 * 109.46630 * 175.55235 * 14 13 3 16 16 H 1.09006 * 109.47122 * 305.00479 * 15 14 13 17 17 O 1.42897 * 109.47280 * 65.00139 * 15 14 13 18 18 C 1.50694 * 109.47250 * 185.00228 * 15 14 13 19 19 C 1.38261 * 119.99332 * 279.72297 * 18 15 14 20 20 C 1.38222 * 120.02954 * 179.76615 * 19 18 15 21 21 C 1.38246 * 120.01195 * 0.50960 * 20 19 18 22 22 C 1.38332 * 119.98459 * 359.74682 * 21 20 19 23 23 Cl 1.73596 * 120.01550 * 180.02562 * 22 21 20 24 24 C 1.38200 * 119.99485 * 99.99897 * 18 15 14 25 25 H 1.09004 * 109.46849 * 175.55999 * 1 2 3 26 26 H 1.09002 * 109.47004 * 55.56255 * 1 2 3 27 27 H 1.08999 * 109.47571 * 295.55741 * 1 2 3 28 28 H 1.08998 * 109.47221 * 119.99585 * 2 1 3 29 29 H 1.09004 * 109.47415 * 239.99892 * 2 1 3 30 30 H 0.97002 * 120.00033 * 179.97438 * 8 7 5 31 31 H 1.00896 * 110.99507 * 209.89683 * 13 3 2 32 32 H 1.08995 * 109.47219 * 295.54936 * 14 13 3 33 33 H 1.08999 * 109.47280 * 55.55612 * 14 13 3 34 34 H 0.96703 * 114.00320 * 59.99934 * 17 15 14 35 35 H 1.08001 * 119.98807 * 0.02562 * 19 18 15 36 36 H 1.08004 * 119.99954 * 180.25783 * 20 19 18 37 37 H 1.07997 * 120.01012 * 179.72570 * 21 20 19 38 38 H 1.07998 * 120.00661 * 0.02562 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1298 1.4425 0.0133 5 6 1.5526 2.1476 -1.2396 6 1 0.9306 3.0260 -1.1518 7 6 1.9010 1.6712 -2.4856 8 7 1.4761 2.2867 -3.5673 9 14 2.9765 0.1514 -2.6374 10 1 2.1182 -1.0594 -2.6882 11 1 3.7838 0.2384 -3.8807 12 1 3.8825 0.0669 -1.4638 13 7 1.5357 2.1402 1.1904 14 6 2.4174 1.9174 2.3440 15 6 1.9228 2.7459 3.5314 16 1 1.8474 3.7930 3.2376 17 8 0.6381 2.2724 3.9404 18 6 2.8945 2.6140 4.6756 19 6 2.8558 1.4973 5.4899 20 6 3.7499 1.3732 6.5367 21 6 4.6766 2.3707 6.7765 22 6 4.7123 3.4906 5.9653 23 17 5.8760 4.7433 6.2653 24 6 3.8204 3.6118 4.9143 25 1 -0.3633 -1.0246 -0.0796 26 1 -0.3633 0.5812 -0.8476 27 1 -0.3634 0.4433 0.9271 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.7215 1.9518 -4.4440 31 1 1.4189 3.1259 1.0094 32 1 2.4081 0.8604 2.6096 33 1 3.4332 2.2190 2.0886 34 1 0.6300 1.3456 4.2162 35 1 2.1294 0.7196 5.3055 36 1 3.7219 0.4987 7.1699 37 1 5.3722 2.2757 7.5971 38 1 3.8473 4.4863 4.2811 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846993521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:58 Heat of formation + Delta-G solvation = -54.856506 kcal Electronic energy + Delta-G solvation = -19891.257441 eV Core-core repulsion = 16758.368883 eV Total energy + Delta-G solvation = -3132.888558 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.77356 -38.75832 -37.66859 -37.10205 -34.45392 -33.30653 -32.34171 -31.61413 -29.36750 -27.45767 -24.94962 -24.21741 -23.68374 -22.04702 -21.17558 -18.73063 -18.56877 -17.55578 -16.95510 -16.87659 -16.34187 -15.85826 -15.48645 -15.27896 -14.98183 -14.86590 -14.67844 -14.51947 -14.40645 -13.68936 -13.30303 -12.97540 -12.86145 -12.70710 -12.49783 -12.45366 -12.41660 -12.15925 -12.07316 -11.85898 -11.75147 -11.25353 -11.02086 -10.87252 -10.65706 -9.91339 -9.68076 -9.08136 -8.29144 -6.31459 0.13601 0.24161 1.11492 1.30117 1.33620 1.43277 2.31061 2.58031 3.06687 3.27097 3.56855 3.81979 3.90296 4.01184 4.12587 4.19898 4.30343 4.38446 4.43893 4.50574 4.62558 4.73211 4.77973 4.88718 4.92698 4.98619 5.18461 5.21660 5.34006 5.37842 5.41406 5.48691 5.66267 5.80146 5.80303 6.00595 6.50251 6.65674 6.80888 6.90970 7.34000 8.87300 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.022279 B = 0.003835 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.505006 B = 7298.487206 C = 7777.193604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.112 4.112 3 C 0.189 3.811 4 H -0.010 1.010 5 C -0.510 4.510 6 H 0.040 0.960 7 C 0.018 3.982 8 N -0.946 5.946 9 Si 0.944 3.056 10 H -0.266 1.266 11 H -0.301 1.301 12 H -0.253 1.253 13 N -0.665 5.665 14 C 0.037 3.963 15 C 0.163 3.837 16 H 0.098 0.902 17 O -0.552 6.552 18 C -0.107 4.107 19 C -0.109 4.109 20 C -0.100 4.100 21 C -0.116 4.116 22 C -0.046 4.046 23 Cl -0.076 7.076 24 C -0.116 4.116 25 H 0.044 0.956 26 H 0.030 0.970 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.028 0.972 30 H 0.265 0.735 31 H 0.334 0.666 32 H 0.081 0.919 33 H 0.025 0.975 34 H 0.384 0.616 35 H 0.150 0.850 36 H 0.164 0.836 37 H 0.151 0.849 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.599 -3.500 23.339 24.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.150 4.150 3 C 0.080 3.920 4 H 0.008 0.992 5 C -0.548 4.548 6 H 0.059 0.941 7 C -0.179 4.179 8 N -0.587 5.587 9 Si 0.772 3.228 10 H -0.192 1.192 11 H -0.229 1.229 12 H -0.177 1.177 13 N -0.296 5.296 14 C -0.093 4.093 15 C 0.103 3.897 16 H 0.115 0.885 17 O -0.359 6.359 18 C -0.108 4.108 19 C -0.127 4.127 20 C -0.118 4.118 21 C -0.134 4.134 22 C -0.072 4.072 23 Cl -0.047 7.047 24 C -0.135 4.135 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.152 0.848 32 H 0.099 0.901 33 H 0.043 0.957 34 H 0.234 0.766 35 H 0.168 0.832 36 H 0.181 0.819 37 H 0.169 0.831 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.093 -3.282 23.212 24.222 hybrid contribution 1.522 -0.015 -1.014 1.829 sum 7.615 -3.297 22.198 23.698 Atomic orbital electron populations 1.21363 0.94904 0.99236 1.01883 1.21709 0.97935 0.96882 0.98508 1.19441 0.91956 0.92348 0.88283 0.99240 1.21275 1.30942 1.12147 0.90438 0.94149 1.25678 0.97017 0.99823 0.95415 1.70032 1.47566 1.42593 0.98473 0.85919 0.79386 0.80463 0.77028 1.19175 1.22865 1.17744 1.60424 1.48977 1.15940 1.04224 1.22707 0.94082 1.00871 0.91666 1.20606 0.81590 0.98579 0.88897 0.88463 1.86634 1.29132 1.32775 1.87356 1.20518 0.97119 0.95215 0.97957 1.21341 0.99460 0.97142 0.94738 1.21460 0.93721 0.99196 0.97450 1.21387 1.00177 0.92242 0.99626 1.21048 0.94738 0.92477 0.98939 1.98370 1.58156 1.52634 1.95525 1.21013 0.95214 1.00010 0.97296 0.93675 0.95076 0.91568 0.92133 0.95345 0.92618 0.84849 0.90112 0.95721 0.76637 0.83246 0.81866 0.83132 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.63 9.52 71.98 0.69 -3.95 16 2 C -0.11 -4.61 5.29 30.59 0.16 -4.44 16 3 C 0.19 8.50 1.90 44.17 0.08 8.58 16 4 H -0.01 -0.46 6.77 -2.39 -0.02 -0.48 16 5 C -0.51 -28.19 7.87 25.60 0.20 -27.99 16 6 H 0.04 2.49 7.85 -2.91 -0.02 2.46 16 7 C 0.02 1.05 5.45 84.65 0.46 1.51 16 8 N -0.95 -58.58 13.96 21.44 0.30 -58.28 16 9 Si 0.94 44.79 24.38 68.60 1.67 46.46 16 10 H -0.27 -12.05 6.86 99.48 0.68 -11.37 16 11 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 12 H -0.25 -11.22 6.53 99.48 0.65 -10.57 16 13 N -0.67 -25.09 5.57 -495.44 -2.76 -27.85 16 14 C 0.04 1.07 5.15 86.30 0.44 1.51 16 15 C 0.16 4.00 3.35 29.85 0.10 4.10 16 16 H 0.10 2.54 7.99 -2.38 -0.02 2.53 16 17 O -0.55 -13.72 13.13 -148.98 -1.96 -15.68 16 18 C -0.11 -2.24 4.97 -19.87 -0.10 -2.34 16 19 C -0.11 -1.77 9.32 22.27 0.21 -1.56 16 20 C -0.10 -1.37 10.05 22.27 0.22 -1.15 16 21 C -0.12 -1.83 9.83 22.29 0.22 -1.61 16 22 C -0.05 -0.90 6.32 22.33 0.14 -0.76 16 23 Cl -0.08 -1.47 28.96 -2.72 -0.08 -1.55 16 24 C -0.12 -2.53 9.45 22.29 0.21 -2.32 16 25 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.03 1.44 7.09 -2.39 -0.02 1.42 16 27 H 0.07 2.47 7.73 -2.39 -0.02 2.45 16 28 H 0.06 2.10 7.62 -2.39 -0.02 2.09 16 29 H 0.03 1.24 3.26 -2.38 -0.01 1.23 16 30 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 31 H 0.33 13.30 8.13 -89.70 -0.73 12.57 16 32 H 0.08 2.16 7.62 -2.39 -0.02 2.14 16 33 H 0.02 0.77 7.94 -2.39 -0.02 0.75 16 34 H 0.38 6.72 7.50 -74.05 -0.56 6.17 16 35 H 0.15 1.72 6.78 -2.91 -0.02 1.70 16 36 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 37 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.13 2.80 8.04 -2.91 -0.02 2.77 16 Total: -1.00 -65.87 321.84 -0.06 -65.93 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -0.28 Total: 21.35 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 3.04 Total: -30.39 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -2.46 Total: -86.13 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -1.96 Total: -15.68 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.67 Total: 46.46 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.08 Total: -1.55 kcal Total: -65.87 -0.06 -65.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846993521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.078 kcal (2) G-P(sol) polarization free energy of solvation -65.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds