Wall clock time and date at job start Fri Apr 10 2020 15:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47339 * 2 1 4 4 H 1.08998 * 109.47729 * 55.88131 * 3 2 1 5 5 C 1.50702 * 109.47146 * 175.88180 * 3 2 1 6 6 H 1.07995 * 120.00415 * 114.76274 * 5 3 2 7 7 C 1.37877 * 119.99763 * 294.75164 * 5 3 2 8 8 N 1.31510 * 119.99770 * 170.14180 * 7 5 3 9 9 Si 1.86800 * 120.00127 * 350.15227 * 7 5 3 10 10 H 1.48505 * 109.46919 * 268.26840 * 9 7 5 11 11 H 1.48500 * 109.47070 * 28.27094 * 9 7 5 12 12 H 1.48498 * 109.46982 * 148.27039 * 9 7 5 13 13 N 1.46904 * 109.47021 * 295.87578 * 3 2 1 14 14 C 1.46905 * 110.99789 * 119.69169 * 13 3 2 15 15 C 1.53002 * 109.46832 * 183.99405 * 14 13 3 16 16 C 1.50703 * 109.46693 * 179.97438 * 15 14 13 17 17 O 1.21279 * 120.00383 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99720 * 179.97438 * 16 15 14 19 19 C 1.39003 * 120.00072 * 179.97438 * 18 16 15 20 20 N 1.29629 * 124.94268 * 359.70302 * 19 18 16 21 21 C 1.31986 * 116.91730 * 179.77182 * 20 19 18 22 22 C 1.33444 * 114.56584 * 0.51334 * 21 20 19 23 23 S 1.70964 * 124.94752 * 180.02562 * 19 18 16 24 24 H 1.08998 * 109.47058 * 58.95843 * 1 2 3 25 25 H 1.09001 * 109.47584 * 178.96531 * 1 2 3 26 26 H 1.09011 * 109.46827 * 298.96100 * 1 2 3 27 27 H 1.08999 * 109.47030 * 239.99563 * 2 1 3 28 28 H 1.09002 * 109.46815 * 119.99797 * 2 1 3 29 29 H 0.97008 * 120.00089 * 180.02562 * 8 7 5 30 30 H 1.00900 * 110.99816 * 355.74541 * 13 3 2 31 31 H 1.09001 * 109.46725 * 303.99131 * 14 13 3 32 32 H 1.08990 * 109.47424 * 63.99096 * 14 13 3 33 33 H 1.09001 * 109.47241 * 299.99410 * 15 14 13 34 34 H 1.09002 * 109.47109 * 60.00016 * 15 14 13 35 35 H 0.96999 * 120.00404 * 0.02562 * 18 16 15 36 36 H 1.08002 * 122.71870 * 180.23006 * 21 20 19 37 37 H 1.08000 * 125.96979 * 179.73299 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6177 1.9772 0.8507 5 6 3.5436 1.4436 0.1020 6 1 4.1402 1.8153 -0.7178 7 6 4.1575 0.9703 1.2423 8 7 5.4599 0.7890 1.2608 9 14 3.1392 0.5863 2.7606 10 1 3.0807 1.7862 3.6337 11 1 1.7639 0.2047 2.3507 12 1 3.7638 -0.5371 3.5042 13 7 1.6333 2.1056 -1.2462 14 6 0.7837 3.2715 -0.9690 15 6 0.2999 3.8752 -2.2890 16 6 -0.5723 5.0709 -2.0047 17 8 -0.7855 5.4073 -0.8591 18 7 -1.1145 5.7670 -3.0234 19 6 -1.9193 6.8695 -2.7612 20 7 -2.2153 7.3081 -1.5778 21 6 -2.9915 8.3735 -1.5123 22 6 -3.3782 8.8519 -2.6965 23 16 -2.6694 7.8399 -3.9523 24 1 -0.3633 0.5299 -0.8805 25 1 -0.3634 -1.0275 -0.0186 26 1 -0.3633 0.4977 0.8993 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 5.8918 0.4556 2.0629 30 1 1.1684 1.4584 -1.8651 31 1 -0.0758 2.9616 -0.3746 32 1 1.3573 4.0162 -0.4175 33 1 1.1594 4.1852 -2.8834 34 1 -0.2738 3.1304 -2.8406 35 1 -0.9437 5.4982 -3.9397 36 1 -3.2933 8.8193 -0.5760 37 1 -4.0147 9.7095 -2.8571 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154306.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:30 Heat of formation + Delta-G solvation = 25.727699 kcal Electronic energy + Delta-G solvation = -19478.455227 eV Core-core repulsion = 16383.397520 eV Total energy + Delta-G solvation = -3095.057707 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.65522 -39.05952 -36.82829 -35.09524 -33.18584 -31.84109 -30.16179 -29.12812 -27.03523 -25.36451 -23.18212 -22.36641 -21.38728 -19.98648 -19.53871 -19.08474 -16.83575 -16.70191 -16.56361 -16.10634 -15.20894 -15.13525 -14.80211 -14.30381 -14.16548 -13.71604 -13.50957 -13.11756 -12.81529 -12.54346 -11.86427 -11.83278 -11.72072 -11.67758 -11.10686 -11.02162 -10.85547 -10.60515 -10.39229 -10.28792 -9.88754 -9.59361 -9.46183 -9.31714 -9.18204 -8.53812 -8.40580 -7.36499 -5.99452 -3.93586 0.49374 0.71287 1.38337 2.38917 2.65837 2.90315 3.32282 3.40534 3.44266 4.13764 4.48139 4.71622 4.97583 5.00804 5.20247 5.25375 5.27637 5.51265 5.60919 5.69158 5.78719 5.86061 6.01887 6.03086 6.20204 6.43480 6.50174 6.62737 6.73930 6.77768 6.90578 7.19913 7.60337 7.81693 7.91487 8.00747 8.31602 8.77834 9.16194 9.65737 11.14127 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.031938 B = 0.003109 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.481296 B = 9002.714822 C = 9107.313261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.150 4.150 3 C 0.192 3.808 4 H 0.016 0.984 5 C -0.494 4.494 6 H 0.081 0.919 7 C 0.068 3.932 8 N -0.900 5.900 9 Si 0.856 3.144 10 H -0.281 1.281 11 H -0.248 1.248 12 H -0.289 1.289 13 N -0.673 5.673 14 C 0.076 3.924 15 C -0.133 4.133 16 C 0.508 3.492 17 O -0.464 6.464 18 N -0.640 5.640 19 C 0.280 3.720 20 N -0.481 5.481 21 C 0.072 3.928 22 C -0.281 4.281 23 S 0.107 5.893 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.262 0.738 30 H 0.322 0.678 31 H 0.028 0.972 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.422 0.578 36 H 0.179 0.821 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.768 11.883 -12.900 25.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.188 4.188 3 C 0.084 3.916 4 H 0.034 0.966 5 C -0.533 4.533 6 H 0.099 0.901 7 C -0.133 4.133 8 N -0.539 5.539 9 Si 0.683 3.317 10 H -0.208 1.208 11 H -0.172 1.172 12 H -0.215 1.215 13 N -0.303 5.303 14 C -0.055 4.055 15 C -0.174 4.174 16 C 0.292 3.708 17 O -0.330 6.330 18 N -0.292 5.292 19 C -0.089 4.089 20 N -0.202 5.202 21 C -0.079 4.079 22 C -0.421 4.421 23 S 0.356 5.644 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.139 0.861 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.127 0.873 34 H 0.112 0.888 35 H 0.260 0.740 36 H 0.196 0.804 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -17.921 12.047 -12.557 24.979 hybrid contribution -1.462 -0.327 1.491 2.114 sum -19.383 11.720 -11.066 25.209 Atomic orbital electron populations 1.21902 0.98509 1.00223 1.00548 1.22574 0.92679 1.01131 1.02451 1.19564 0.96686 0.88603 0.86752 0.96580 1.21054 0.88924 1.40530 1.02784 0.90120 1.24932 0.94701 0.95228 0.98432 1.69927 1.09131 1.46320 1.28524 0.87411 0.82040 0.78197 0.84035 1.20753 1.17233 1.21490 1.60657 1.42533 1.09744 1.17395 1.21734 0.95586 0.94976 0.93162 1.21722 0.99232 0.94207 1.02195 1.21374 0.80145 0.84453 0.84804 1.90841 1.55910 1.66120 1.20175 1.43427 1.47744 1.26253 1.11806 1.23900 0.97917 0.94676 0.92392 1.66589 1.17488 1.14086 1.22047 1.21727 0.95263 0.91933 0.98997 1.26786 1.12695 1.08492 0.94169 1.83923 1.45651 1.23793 1.11021 0.93801 0.93811 0.93652 0.92085 0.91440 0.92851 0.86084 0.95401 0.90274 0.87311 0.88809 0.73992 0.80423 0.80359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.77 37.15 0.36 -2.29 16 2 C -0.15 -3.13 4.48 -26.74 -0.12 -3.25 16 3 C 0.19 4.48 1.76 -68.86 -0.12 4.36 16 4 H 0.02 0.40 6.38 -51.93 -0.33 0.07 16 5 C -0.49 -13.98 9.31 -34.44 -0.32 -14.30 16 6 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 7 C 0.07 1.98 5.40 -17.82 -0.10 1.88 16 8 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 9 Si 0.86 21.36 25.79 -169.99 -4.38 16.98 16 10 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.25 -5.73 5.12 56.52 0.29 -5.44 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 N -0.67 -13.10 6.19 -107.95 -0.67 -13.77 16 14 C 0.08 1.31 4.65 -3.82 -0.02 1.30 16 15 C -0.13 -1.62 5.92 -27.88 -0.17 -1.78 16 16 C 0.51 6.95 7.79 -10.98 -0.09 6.87 16 17 O -0.46 -8.60 14.62 5.56 0.08 -8.52 16 18 N -0.64 -6.60 5.40 -13.07 -0.07 -6.67 16 19 C 0.28 3.28 8.02 -87.34 -0.70 2.58 16 20 N -0.48 -6.86 8.65 -15.12 -0.13 -6.99 16 21 C 0.07 0.76 11.34 -19.16 -0.22 0.54 16 22 C -0.28 -2.25 11.35 29.06 0.33 -1.92 16 23 S 0.11 0.85 23.22 -107.50 -2.50 -1.65 16 24 H 0.04 0.67 7.01 -51.93 -0.36 0.30 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.07 1.52 4.42 -51.93 -0.23 1.29 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.32 5.47 7.03 -39.29 -0.28 5.19 16 31 H 0.03 0.50 8.09 -51.93 -0.42 0.08 16 32 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 33 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.42 2.51 8.82 -40.82 -0.36 2.15 16 36 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.18 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 319.99 15.07 4.82 4.82 Total: -1.00 -35.82 319.99 -8.26 -44.08 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.03 Total: 4.81 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -1.15 Total: -6.03 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.10 Total: -54.50 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.08 Total: -8.52 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.38 Total: 16.98 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.50 Total: -1.65 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.82 -8.26 -44.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154306.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.808 kcal (2) G-P(sol) polarization free energy of solvation -35.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds