Wall clock time and date at job start Fri Apr 10 2020 15:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47330 * 2 1 4 4 H 1.09007 * 109.47218 * 304.26747 * 3 2 1 5 5 C 1.50696 * 109.47211 * 184.26715 * 3 2 1 6 6 H 1.08000 * 120.00238 * 239.99559 * 5 3 2 7 7 C 1.37878 * 119.99992 * 60.00117 * 5 3 2 8 8 N 1.31509 * 120.00117 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99955 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46938 * 90.00024 * 9 7 5 11 11 H 1.48506 * 109.47273 * 210.00055 * 9 7 5 12 12 H 1.48497 * 109.47619 * 330.00158 * 9 7 5 13 13 N 1.46902 * 109.47045 * 64.26710 * 3 2 1 14 14 C 1.46900 * 111.00029 * 203.86780 * 13 3 2 15 15 H 1.09001 * 109.46734 * 325.36126 * 14 13 3 16 16 C 1.52996 * 109.47262 * 85.35903 * 14 13 3 17 17 O 1.42900 * 109.47172 * 64.10217 * 16 14 13 18 18 C 1.50701 * 109.46942 * 205.35873 * 14 13 3 19 19 C 1.38262 * 119.99069 * 140.00040 * 18 14 13 20 20 C 1.38221 * 120.02586 * 179.97438 * 19 18 14 21 21 C 1.38233 * 120.01011 * 0.02562 * 20 19 18 22 22 C 1.38327 * 119.99237 * 359.97438 * 21 20 19 23 23 Cl 1.73598 * 120.01832 * 180.02562 * 22 21 20 24 24 C 1.38189 * 119.99417 * 319.72709 * 18 14 13 25 25 H 1.08999 * 109.47043 * 184.29021 * 1 2 3 26 26 H 1.08994 * 109.47049 * 304.29286 * 1 2 3 27 27 H 1.09005 * 109.47156 * 64.29012 * 1 2 3 28 28 H 1.09000 * 109.46964 * 240.00131 * 2 1 3 29 29 H 1.08992 * 109.47482 * 120.00304 * 2 1 3 30 30 H 0.97001 * 120.00140 * 179.97438 * 8 7 5 31 31 H 1.00898 * 110.99904 * 79.91105 * 13 3 2 32 32 H 1.09002 * 109.47564 * 184.10890 * 16 14 13 33 33 H 1.08999 * 109.47333 * 304.10867 * 16 14 13 34 34 H 0.96701 * 114.00493 * 179.97438 * 17 16 14 35 35 H 1.08007 * 119.98904 * 359.97236 * 19 18 14 36 36 H 1.07997 * 119.99487 * 180.02562 * 20 19 18 37 37 H 1.08001 * 120.00589 * 180.02562 * 21 20 19 38 38 H 1.08007 * 120.00591 * 0.02562 * 24 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6156 1.9780 -0.8493 5 6 3.5433 1.4438 -0.1057 6 1 4.1392 1.8917 0.6757 7 6 4.1579 0.8732 -1.2001 8 7 3.4323 0.3283 -2.1520 9 14 6.0212 0.8754 -1.3315 10 1 6.5636 -0.3534 -0.6981 11 1 6.4166 0.9105 -2.7625 12 1 6.5650 2.0708 -0.6384 13 7 1.6363 2.1046 1.2477 14 6 1.5856 3.5628 1.0773 15 1 2.3710 3.8757 0.3892 16 6 0.2220 3.9630 0.5106 17 8 -0.8001 3.6389 1.4552 18 6 1.7910 4.2319 2.4119 19 6 2.5672 5.3726 2.5010 20 6 2.7555 5.9872 3.7246 21 6 2.1683 5.4612 4.8602 22 6 1.3917 4.3200 4.7717 23 17 0.6534 3.6593 6.1972 24 6 1.1989 3.7084 3.5455 25 1 -0.3633 -1.0248 0.0769 26 1 -0.3633 0.5790 0.8490 27 1 -0.3634 0.4458 -0.9260 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8646 -0.0728 -2.9221 31 1 2.2502 1.8504 2.0069 32 1 0.2100 5.0354 0.3157 33 1 0.0421 3.4229 -0.4189 34 1 -1.6931 3.8660 1.1619 35 1 3.0265 5.7837 1.6141 36 1 3.3616 6.8784 3.7936 37 1 2.3152 5.9417 5.8162 38 1 0.5893 2.8196 3.4751 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154520.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:04 Heat of formation + Delta-G solvation = -40.574666 kcal Electronic energy + Delta-G solvation = -20515.424287 eV Core-core repulsion = 17383.155036 eV Total energy + Delta-G solvation = -3132.269251 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.42378 -37.11828 -36.16168 -35.45420 -33.09382 -31.55057 -30.50949 -29.86775 -27.60886 -25.81663 -23.31993 -22.64712 -22.17315 -19.99161 -19.38685 -17.14103 -16.86926 -16.41191 -15.37221 -15.27270 -14.74113 -14.58638 -13.90712 -13.55229 -13.31378 -13.18397 -12.99876 -12.83947 -12.41148 -11.97356 -11.61240 -11.39525 -11.29166 -11.18369 -11.05714 -10.93215 -10.87071 -10.65262 -10.36898 -10.12961 -9.60973 -9.58742 -9.46965 -9.06679 -8.59895 -8.45997 -8.39767 -7.29453 -6.02931 -4.16528 1.36590 1.53183 2.31824 3.24392 3.31886 3.34308 3.85749 4.36382 4.73408 4.94315 4.98190 5.17264 5.25595 5.28329 5.46806 5.68071 5.70535 5.89956 5.98410 6.12001 6.24257 6.31518 6.41558 6.49200 6.52424 6.56507 6.74803 6.85852 7.04136 7.09868 7.22822 7.43087 7.57621 7.75778 8.04340 8.08874 8.11722 8.30581 8.60918 8.96468 9.51734 10.96650 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.005306 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.645125 B = 5275.299280 C = 5895.833560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.548 4.548 6 H 0.053 0.947 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.887 3.113 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.671 5.671 14 C 0.130 3.870 15 H 0.071 0.929 16 C 0.095 3.905 17 O -0.554 6.554 18 C -0.058 4.058 19 C -0.114 4.114 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.042 4.042 23 Cl -0.083 7.083 24 C -0.066 4.066 25 H 0.022 0.978 26 H 0.056 0.944 27 H 0.032 0.968 28 H 0.089 0.911 29 H 0.030 0.970 30 H 0.261 0.739 31 H 0.331 0.669 32 H 0.033 0.967 33 H 0.051 0.949 34 H 0.364 0.636 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.346 9.651 9.020 14.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.143 4.143 3 C 0.107 3.893 4 H 0.050 0.950 5 C -0.587 4.587 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.301 5.301 14 C 0.019 3.981 15 H 0.089 0.911 16 C 0.017 3.983 17 O -0.357 6.357 18 C -0.059 4.059 19 C -0.133 4.133 20 C -0.135 4.135 21 C -0.141 4.141 22 C -0.068 4.068 23 Cl -0.055 7.055 24 C -0.085 4.085 25 H 0.041 0.959 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.107 0.893 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.148 0.852 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.208 0.792 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.549 9.186 9.178 14.122 hybrid contribution 1.609 0.345 -0.469 1.712 sum -3.940 9.531 8.709 13.498 Atomic orbital electron populations 1.21714 0.98878 0.98448 1.00524 1.21469 0.92213 0.99040 1.01615 1.19200 0.92531 0.91349 0.86216 0.94988 1.21885 0.92743 1.38231 1.05816 0.92867 1.24915 0.97876 0.94928 0.95635 1.69874 1.34881 1.37931 1.09519 0.86681 0.86178 0.78464 0.77177 1.20625 1.21217 1.20082 1.60992 1.56572 1.03097 1.09409 1.20438 0.94917 0.91001 0.91720 0.91098 1.22172 0.88023 0.96434 0.91695 1.86594 1.17255 1.86909 1.44907 1.20017 0.95497 0.94858 0.95498 1.21214 0.98448 0.95714 0.97920 1.20956 1.00244 1.00198 0.92091 1.20931 0.98363 0.95520 0.99255 1.20961 1.00530 0.97156 0.88158 1.98343 1.81916 1.85745 1.39448 1.21040 0.97960 1.00181 0.89276 0.95860 0.92513 0.94857 0.89291 0.95139 0.92866 0.85184 0.94916 0.93104 0.79157 0.85756 0.85674 0.85736 0.83568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.85 37.16 0.37 -2.46 16 2 C -0.10 -2.46 5.45 -26.73 -0.15 -2.61 16 3 C 0.21 5.06 1.79 -68.86 -0.12 4.94 16 4 H 0.03 0.83 7.12 -51.93 -0.37 0.46 16 5 C -0.55 -14.24 8.21 -34.44 -0.28 -14.52 16 6 H 0.05 1.39 7.76 -52.49 -0.41 0.98 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.34 11.30 55.43 0.63 -23.71 16 9 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.67 -13.44 4.73 -102.17 -0.48 -13.92 16 14 C 0.13 2.30 2.45 -68.87 -0.17 2.13 16 15 H 0.07 1.37 7.45 -51.93 -0.39 0.99 16 16 C 0.10 1.50 6.77 37.16 0.25 1.75 16 17 O -0.55 -8.30 12.04 -35.23 -0.42 -8.72 16 18 C -0.06 -0.93 4.60 -104.63 -0.48 -1.41 16 19 C -0.11 -1.62 9.67 -39.58 -0.38 -2.00 16 20 C -0.12 -1.46 10.05 -39.59 -0.40 -1.85 16 21 C -0.12 -1.57 9.83 -39.55 -0.39 -1.95 16 22 C -0.04 -0.60 6.32 -39.50 -0.25 -0.85 16 23 Cl -0.08 -1.11 28.96 -51.86 -1.50 -2.62 16 24 C -0.07 -1.04 7.80 -39.55 -0.31 -1.35 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 1.14 7.61 -51.93 -0.40 0.74 16 27 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 2.34 5.97 -51.93 -0.31 2.03 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.33 6.86 7.70 -39.29 -0.30 6.56 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.86 7.40 -51.93 -0.38 0.48 16 34 H 0.36 3.85 9.12 45.56 0.42 4.27 16 35 H 0.12 1.60 8.04 -52.48 -0.42 1.18 16 36 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 37 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.15 2.52 7.46 -52.48 -0.39 2.13 16 LS Contribution 328.57 15.07 4.95 4.95 Total: -1.00 -27.65 328.57 -8.88 -36.53 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -4.63 Total: 10.19 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -2.41 Total: -18.43 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.14 Total: -37.63 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.42 Total: -8.72 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.50 Total: -2.62 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.65 -8.88 -36.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154520.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.040 kcal (2) G-P(sol) polarization free energy of solvation -27.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds