Wall clock time and date at job start Fri Apr 10 2020 15:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47330 * 2 1 4 4 H 1.09007 * 109.47218 * 304.26747 * 3 2 1 5 5 C 1.50696 * 109.47211 * 184.26715 * 3 2 1 6 6 H 1.08000 * 120.00238 * 239.99559 * 5 3 2 7 7 C 1.37878 * 119.99992 * 60.00117 * 5 3 2 8 8 N 1.31509 * 120.00117 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99955 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46938 * 90.00024 * 9 7 5 11 11 H 1.48506 * 109.47273 * 210.00055 * 9 7 5 12 12 H 1.48497 * 109.47619 * 330.00158 * 9 7 5 13 13 N 1.46902 * 109.47045 * 64.26710 * 3 2 1 14 14 C 1.46900 * 111.00029 * 203.86780 * 13 3 2 15 15 H 1.09001 * 109.46734 * 325.36126 * 14 13 3 16 16 C 1.52996 * 109.47262 * 85.35903 * 14 13 3 17 17 O 1.42900 * 109.47172 * 64.10217 * 16 14 13 18 18 C 1.50701 * 109.46942 * 205.35873 * 14 13 3 19 19 C 1.38262 * 119.99069 * 140.00040 * 18 14 13 20 20 C 1.38221 * 120.02586 * 179.97438 * 19 18 14 21 21 C 1.38233 * 120.01011 * 0.02562 * 20 19 18 22 22 C 1.38327 * 119.99237 * 359.97438 * 21 20 19 23 23 Cl 1.73598 * 120.01832 * 180.02562 * 22 21 20 24 24 C 1.38189 * 119.99417 * 319.72709 * 18 14 13 25 25 H 1.08999 * 109.47043 * 184.29021 * 1 2 3 26 26 H 1.08994 * 109.47049 * 304.29286 * 1 2 3 27 27 H 1.09005 * 109.47156 * 64.29012 * 1 2 3 28 28 H 1.09000 * 109.46964 * 240.00131 * 2 1 3 29 29 H 1.08992 * 109.47482 * 120.00304 * 2 1 3 30 30 H 0.97001 * 120.00140 * 179.97438 * 8 7 5 31 31 H 1.00898 * 110.99904 * 79.91105 * 13 3 2 32 32 H 1.09002 * 109.47564 * 184.10890 * 16 14 13 33 33 H 1.08999 * 109.47333 * 304.10867 * 16 14 13 34 34 H 0.96701 * 114.00493 * 179.97438 * 17 16 14 35 35 H 1.08007 * 119.98904 * 359.97236 * 19 18 14 36 36 H 1.07997 * 119.99487 * 180.02562 * 20 19 18 37 37 H 1.08001 * 120.00589 * 180.02562 * 21 20 19 38 38 H 1.08007 * 120.00591 * 0.02562 * 24 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6156 1.9780 -0.8493 5 6 3.5433 1.4438 -0.1057 6 1 4.1392 1.8917 0.6757 7 6 4.1579 0.8732 -1.2001 8 7 3.4323 0.3283 -2.1520 9 14 6.0212 0.8754 -1.3315 10 1 6.5636 -0.3534 -0.6981 11 1 6.4166 0.9105 -2.7625 12 1 6.5650 2.0708 -0.6384 13 7 1.6363 2.1046 1.2477 14 6 1.5856 3.5628 1.0773 15 1 2.3710 3.8757 0.3892 16 6 0.2220 3.9630 0.5106 17 8 -0.8001 3.6389 1.4552 18 6 1.7910 4.2319 2.4119 19 6 2.5672 5.3726 2.5010 20 6 2.7555 5.9872 3.7246 21 6 2.1683 5.4612 4.8602 22 6 1.3917 4.3200 4.7717 23 17 0.6534 3.6593 6.1972 24 6 1.1989 3.7084 3.5455 25 1 -0.3633 -1.0248 0.0769 26 1 -0.3633 0.5790 0.8490 27 1 -0.3634 0.4458 -0.9260 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8646 -0.0728 -2.9221 31 1 2.2502 1.8504 2.0069 32 1 0.2100 5.0354 0.3157 33 1 0.0421 3.4229 -0.4189 34 1 -1.6931 3.8660 1.1619 35 1 3.0265 5.7837 1.6141 36 1 3.3616 6.8784 3.7936 37 1 2.3152 5.9417 5.8162 38 1 0.5893 2.8196 3.4751 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154520.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:03 Heat of formation + Delta-G solvation = -57.527683 kcal Electronic energy + Delta-G solvation = -20516.159425 eV Core-core repulsion = 17383.155036 eV Total energy + Delta-G solvation = -3133.004389 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.60196 -38.48091 -37.27733 -36.96554 -34.68977 -33.37706 -31.59959 -31.30339 -29.07216 -27.60325 -24.90900 -24.00140 -23.40703 -21.41963 -21.08429 -18.74769 -18.27660 -17.76566 -16.82470 -16.59156 -16.30081 -15.82227 -15.45726 -14.90641 -14.70231 -14.65176 -14.40407 -14.14292 -13.94082 -13.38846 -13.21953 -13.06860 -12.88985 -12.69539 -12.52127 -12.35749 -12.24341 -12.09708 -11.97609 -11.55896 -11.47123 -11.33020 -11.03902 -10.68461 -10.43187 -9.72089 -9.56001 -9.02164 -8.03923 -6.26335 0.26631 0.44400 1.23986 1.37667 1.40350 1.48148 2.40408 2.75525 3.15421 3.50024 3.67006 3.79196 4.05302 4.23635 4.37917 4.43935 4.56187 4.62972 4.73087 4.75190 4.77159 4.84199 4.95439 4.99344 5.12594 5.19637 5.37698 5.43667 5.46712 5.53783 5.61912 5.71915 5.81414 5.94339 6.12340 6.21691 6.41810 6.80435 7.01418 7.10349 7.45377 8.91725 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.005306 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.645125 B = 5275.299280 C = 5895.833560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.102 4.102 3 C 0.225 3.775 4 H 0.006 0.994 5 C -0.558 4.558 6 H 0.047 0.953 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.946 3.054 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.272 1.272 13 N -0.661 5.661 14 C 0.128 3.872 15 H 0.049 0.951 16 C 0.104 3.896 17 O -0.564 6.564 18 C -0.073 4.073 19 C -0.122 4.122 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.050 4.050 23 Cl -0.077 7.077 24 C -0.077 4.077 25 H 0.040 0.960 26 H 0.060 0.940 27 H 0.030 0.970 28 H 0.060 0.940 29 H 0.023 0.977 30 H 0.262 0.738 31 H 0.326 0.674 32 H 0.056 0.944 33 H 0.032 0.968 34 H 0.384 0.616 35 H 0.134 0.866 36 H 0.160 0.840 37 H 0.151 0.849 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.977 11.203 10.351 16.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.140 4.140 3 C 0.116 3.884 4 H 0.024 0.976 5 C -0.597 4.597 6 H 0.065 0.935 7 C -0.176 4.176 8 N -0.548 5.548 9 Si 0.772 3.228 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.196 1.196 13 N -0.290 5.290 14 C 0.018 3.982 15 H 0.067 0.933 16 C 0.025 3.975 17 O -0.370 6.370 18 C -0.074 4.074 19 C -0.140 4.140 20 C -0.125 4.125 21 C -0.136 4.136 22 C -0.077 4.077 23 Cl -0.049 7.049 24 C -0.096 4.096 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.142 0.858 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.232 0.768 35 H 0.152 0.848 36 H 0.178 0.822 37 H 0.169 0.831 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.204 10.750 10.516 15.914 hybrid contribution 1.459 -0.091 -0.826 1.679 sum -3.745 10.659 9.691 14.884 Atomic orbital electron populations 1.21542 0.96389 0.99622 1.00496 1.21346 0.94398 0.98552 0.99751 1.18933 0.91208 0.91395 0.86816 0.97596 1.22163 0.94103 1.37843 1.05602 0.93458 1.25596 1.01751 0.94800 0.95484 1.69995 1.36316 1.38592 1.09909 0.85756 0.81529 0.78386 0.77131 1.20502 1.20887 1.19633 1.60927 1.55745 1.04843 1.07488 1.20426 0.95558 0.89385 0.92810 0.93266 1.21985 0.87396 0.97437 0.90682 1.86546 1.18449 1.87153 1.44827 1.19857 0.97134 0.95988 0.94397 1.21413 0.98064 0.95239 0.99331 1.21328 0.99509 1.00690 0.90957 1.21287 0.97044 0.94605 1.00627 1.21074 1.00991 0.97743 0.87872 1.98343 1.81886 1.85808 1.38820 1.20846 0.98571 1.00058 0.90109 0.94107 0.92100 0.95123 0.92146 0.95833 0.92918 0.85774 0.92570 0.94950 0.76846 0.84791 0.82239 0.83118 0.85492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 9.85 71.98 0.71 -4.31 16 2 C -0.10 -4.89 5.45 30.59 0.17 -4.73 16 3 C 0.23 10.93 1.79 44.17 0.08 11.01 16 4 H 0.01 0.33 7.12 -2.38 -0.02 0.31 16 5 C -0.56 -29.61 8.21 25.60 0.21 -29.40 16 6 H 0.05 2.51 7.76 -2.91 -0.02 2.49 16 7 C 0.02 1.29 5.29 84.66 0.45 1.74 16 8 N -0.91 -51.09 11.30 21.45 0.24 -50.85 16 9 Si 0.95 42.85 29.54 68.60 2.03 44.88 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 N -0.66 -27.09 4.73 -477.15 -2.26 -29.35 16 14 C 0.13 4.61 2.45 44.17 0.11 4.72 16 15 H 0.05 1.97 7.45 -2.39 -0.02 1.95 16 16 C 0.10 3.25 6.77 71.98 0.49 3.74 16 17 O -0.56 -16.51 12.04 -148.98 -1.79 -18.30 16 18 C -0.07 -2.29 4.60 -19.87 -0.09 -2.39 16 19 C -0.12 -3.23 9.67 22.27 0.22 -3.02 16 20 C -0.11 -2.31 10.05 22.26 0.22 -2.09 16 21 C -0.12 -2.64 9.83 22.29 0.22 -2.43 16 22 C -0.05 -1.37 6.32 22.32 0.14 -1.23 16 23 Cl -0.08 -1.95 28.96 -2.72 -0.08 -2.03 16 24 C -0.08 -2.40 7.80 22.29 0.17 -2.22 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.06 2.42 7.61 -2.39 -0.02 2.40 16 27 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.06 3.27 5.97 -2.39 -0.01 3.25 16 29 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 31 H 0.33 13.83 7.70 -89.70 -0.69 13.14 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.03 1.12 7.40 -2.39 -0.02 1.10 16 34 H 0.38 7.65 9.12 -74.06 -0.68 6.97 16 35 H 0.13 3.22 8.04 -2.91 -0.02 3.19 16 36 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.13 4.41 7.46 -2.91 -0.02 4.39 16 Total: -1.00 -59.59 328.57 0.94 -58.65 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: -0.29 Total: 27.59 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: 3.09 Total: -30.60 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -2.01 Total: -80.19 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -1.79 Total: -18.30 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.08 Total: -2.03 kcal Total: -59.59 0.94 -58.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154520.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.123 kcal (2) G-P(sol) polarization free energy of solvation -59.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds