Wall clock time and date at job start Fri Apr 10 2020 15:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47099 * 2 1 4 4 H 1.09000 * 109.46917 * 179.51267 * 3 2 1 5 5 C 1.50701 * 109.47031 * 299.50803 * 3 2 1 6 6 H 1.08001 * 119.99779 * 119.99732 * 5 3 2 7 7 C 1.37878 * 120.00451 * 300.00243 * 5 3 2 8 8 N 1.31519 * 119.99360 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00361 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47193 * 89.99804 * 9 7 5 11 11 H 1.48506 * 109.46966 * 209.99946 * 9 7 5 12 12 H 1.48497 * 109.47024 * 329.99543 * 9 7 5 13 13 N 1.46891 * 109.47259 * 59.50929 * 3 2 1 14 14 C 1.46901 * 111.00374 * 85.90187 * 13 3 2 15 15 H 1.09000 * 109.46802 * 327.25588 * 14 13 3 16 16 C 1.53004 * 109.46976 * 87.24976 * 14 13 3 17 17 O 1.42897 * 109.46808 * 65.00028 * 16 14 13 18 18 C 1.50690 * 109.47617 * 207.25185 * 14 13 3 19 19 C 1.38265 * 119.99666 * 139.99836 * 18 14 13 20 20 C 1.38218 * 120.02822 * 179.97438 * 19 18 14 21 21 C 1.38232 * 120.01644 * 0.02562 * 20 19 18 22 22 C 1.38336 * 119.98408 * 0.02562 * 21 20 19 23 23 Cl 1.73598 * 120.01397 * 180.02562 * 22 21 20 24 24 C 1.38192 * 119.99620 * 319.72421 * 18 14 13 25 25 H 1.08998 * 109.46759 * 296.23024 * 1 2 3 26 26 H 1.09000 * 109.46869 * 176.23116 * 1 2 3 27 27 H 1.09001 * 109.47083 * 56.22662 * 1 2 3 28 28 H 1.08998 * 109.46990 * 119.99886 * 2 1 3 29 29 H 1.09004 * 109.46735 * 239.99971 * 2 1 3 30 30 H 0.97005 * 119.99690 * 179.97438 * 8 7 5 31 31 H 1.00899 * 111.00237 * 209.86238 * 13 3 2 32 32 H 1.09000 * 109.47141 * 185.00834 * 16 14 13 33 33 H 1.09003 * 109.46795 * 305.00774 * 16 14 13 34 34 H 0.96706 * 113.99886 * 180.02562 * 17 16 14 35 35 H 1.07998 * 119.98588 * 359.97438 * 19 18 14 36 36 H 1.08002 * 119.99202 * 180.02562 * 20 19 18 37 37 H 1.08002 * 120.00976 * 180.02562 * 21 20 19 38 38 H 1.08011 * 120.00409 * 0.02562 * 24 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1300 1.4425 0.0087 5 6 1.5477 2.1494 -1.2365 6 1 0.9260 3.0277 -1.1449 7 6 1.8908 1.6748 -2.4848 8 7 2.6483 0.6054 -2.5962 9 14 1.2811 2.5514 -4.0174 10 1 2.2630 3.5915 -4.4164 11 1 1.1248 1.5692 -5.1203 12 1 -0.0292 3.1901 -3.7341 13 7 1.5408 2.1384 1.1934 14 6 2.4267 1.9133 2.3434 15 1 2.8657 0.9180 2.2744 16 6 3.5400 2.9629 2.3426 17 8 2.9734 4.2583 2.5496 18 6 1.6323 2.0248 3.6190 19 6 1.8725 1.1491 4.6617 20 6 1.1445 1.2510 5.8322 21 6 0.1754 2.2283 5.9609 22 6 -0.0661 3.1041 4.9177 23 17 -1.2825 4.3321 5.0788 24 6 0.6676 3.0057 3.7487 25 1 -0.3633 0.4542 0.9218 26 1 -0.3633 -1.0255 -0.0676 27 1 -0.3633 0.5713 -0.8542 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 2.8894 0.2712 -3.4744 31 1 1.4238 3.1245 1.0145 32 1 4.2470 2.7433 3.1426 33 1 4.0582 2.9421 1.3838 34 1 3.6230 4.9746 2.5604 35 1 2.6292 0.3851 4.5614 36 1 1.3329 0.5669 6.6464 37 1 -0.3930 2.3081 6.8758 38 1 0.4828 3.6924 2.9356 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154523.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:11 Heat of formation + Delta-G solvation = -39.249255 kcal Electronic energy + Delta-G solvation = -20519.726470 eV Core-core repulsion = 17387.514693 eV Total energy + Delta-G solvation = -3132.211777 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.42568 -37.33461 -36.17005 -35.56010 -33.16003 -31.30888 -30.49205 -29.85342 -27.50926 -25.64007 -23.37613 -23.10777 -22.23072 -20.42847 -18.86094 -17.50255 -16.68232 -16.15132 -15.31581 -15.25591 -14.74266 -14.60470 -14.34820 -13.59813 -13.47148 -13.14934 -13.09683 -12.77894 -12.19038 -11.94636 -11.83853 -11.55335 -11.28115 -11.12804 -10.96872 -10.90907 -10.74772 -10.58448 -10.35704 -10.15651 -9.74842 -9.68327 -9.39215 -8.81504 -8.56053 -8.49689 -8.42509 -7.26986 -6.04031 -4.08950 1.40189 1.57752 2.34714 3.28163 3.35670 3.39857 3.87869 4.38667 4.51744 4.92739 4.99307 5.23966 5.26928 5.32592 5.42268 5.53214 5.68878 5.75175 5.88809 5.91717 6.07697 6.26495 6.49619 6.52703 6.54767 6.68330 6.84471 6.89825 7.05443 7.23868 7.28765 7.48090 7.73697 7.77148 7.81063 7.85383 8.25816 8.37753 8.64859 9.00413 9.56002 11.01840 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.020058 B = 0.004800 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.643006 B = 5831.363421 C = 6063.337681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.216 3.784 4 H 0.000 1.000 5 C -0.510 4.510 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.673 5.673 14 C 0.125 3.875 15 H 0.093 0.907 16 C 0.052 3.948 17 O -0.563 6.563 18 C -0.036 4.036 19 C -0.119 4.119 20 C -0.116 4.116 21 C -0.125 4.125 22 C -0.040 4.040 23 Cl -0.084 7.084 24 C -0.060 4.060 25 H 0.042 0.958 26 H 0.012 0.988 27 H 0.055 0.945 28 H 0.008 0.992 29 H 0.087 0.913 30 H 0.260 0.740 31 H 0.342 0.658 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.373 0.627 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.191 3.136 14.691 15.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.109 3.891 4 H 0.018 0.982 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.305 5.305 14 C 0.014 3.986 15 H 0.111 0.889 16 C -0.028 4.028 17 O -0.368 6.368 18 C -0.037 4.037 19 C -0.138 4.138 20 C -0.134 4.134 21 C -0.143 4.143 22 C -0.066 4.066 23 Cl -0.056 7.056 24 C -0.079 4.079 25 H 0.061 0.939 26 H 0.032 0.968 27 H 0.075 0.925 28 H 0.027 0.973 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.161 0.839 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.219 0.781 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.834 2.264 14.720 14.917 hybrid contribution 0.940 1.286 -1.125 1.950 sum 0.106 3.550 13.595 14.052 Atomic orbital electron populations 1.21443 0.97457 0.97367 1.01434 1.21455 0.95132 0.98216 0.99341 1.19159 0.92802 0.91433 0.85703 0.98228 1.21167 1.31564 1.11903 0.90247 0.92290 1.24867 0.95048 0.94971 0.98891 1.69882 1.36641 1.22661 1.23644 0.86585 0.79280 0.79311 0.82778 1.20872 1.21275 1.19831 1.60723 1.47465 1.16966 1.05308 1.20608 0.90523 0.97226 0.90248 0.88950 1.22906 0.96095 0.84326 0.99462 1.86478 1.38107 1.16271 1.95934 1.19819 0.95425 0.93620 0.94868 1.21120 1.00137 0.99217 0.93320 1.20921 0.96324 0.98268 0.97924 1.20898 0.99558 0.95823 0.98070 1.20943 0.94882 0.93948 0.96871 1.98342 1.54969 1.54330 1.97934 1.20870 0.93568 0.97983 0.95489 0.93867 0.96849 0.92549 0.97305 0.89496 0.92989 0.83866 0.94355 0.92655 0.78095 0.85991 0.85763 0.85805 0.84499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.52 37.16 0.35 -2.33 16 2 C -0.10 -2.43 5.57 -26.73 -0.15 -2.57 16 3 C 0.22 5.12 2.09 -68.87 -0.14 4.97 16 4 H 0.00 0.00 7.27 -51.93 -0.38 -0.37 16 5 C -0.51 -13.31 7.29 -34.44 -0.25 -13.56 16 6 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 7 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -24.52 11.32 55.43 0.63 -23.89 16 9 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 13 N -0.67 -13.54 4.77 -102.18 -0.49 -14.03 16 14 C 0.13 2.12 2.45 -68.87 -0.17 1.95 16 15 H 0.09 1.60 7.05 -51.93 -0.37 1.23 16 16 C 0.05 0.77 6.69 37.16 0.25 1.02 16 17 O -0.56 -8.02 11.43 -35.23 -0.40 -8.42 16 18 C -0.04 -0.57 4.83 -104.63 -0.51 -1.07 16 19 C -0.12 -1.62 9.67 -39.58 -0.38 -2.01 16 20 C -0.12 -1.41 10.04 -39.59 -0.40 -1.81 16 21 C -0.12 -1.60 9.83 -39.55 -0.39 -1.99 16 22 C -0.04 -0.58 6.32 -39.50 -0.25 -0.83 16 23 Cl -0.08 -1.15 28.96 -51.86 -1.50 -2.65 16 24 C -0.06 -0.97 8.10 -39.55 -0.32 -1.29 16 25 H 0.04 0.94 7.71 -51.93 -0.40 0.54 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 1.36 7.10 -51.93 -0.37 0.99 16 28 H 0.01 0.18 7.53 -51.93 -0.39 -0.21 16 29 H 0.09 2.29 6.06 -51.93 -0.31 1.97 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.34 7.09 6.84 -39.29 -0.27 6.82 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.90 7.57 -51.93 -0.39 0.51 16 34 H 0.37 3.68 9.12 45.56 0.42 4.10 16 35 H 0.12 1.43 8.04 -52.49 -0.42 1.01 16 36 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.14 2.36 7.07 -52.48 -0.37 1.99 16 LS Contribution 324.70 15.07 4.89 4.89 Total: -1.00 -27.96 324.70 -8.82 -36.78 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -4.48 Total: 9.35 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -2.45 Total: -17.91 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.14 Total: -37.92 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.40 Total: -8.42 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.50 Total: -2.65 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.96 -8.82 -36.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154523.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.470 kcal (2) G-P(sol) polarization free energy of solvation -27.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds