Wall clock time and date at job start Fri Apr 10 2020 15:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47099 * 2 1 4 4 H 1.09000 * 109.46917 * 179.51267 * 3 2 1 5 5 C 1.50701 * 109.47031 * 299.50803 * 3 2 1 6 6 H 1.08001 * 119.99779 * 119.99732 * 5 3 2 7 7 C 1.37878 * 120.00451 * 300.00243 * 5 3 2 8 8 N 1.31519 * 119.99360 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00361 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47193 * 89.99804 * 9 7 5 11 11 H 1.48506 * 109.46966 * 209.99946 * 9 7 5 12 12 H 1.48497 * 109.47024 * 329.99543 * 9 7 5 13 13 N 1.46891 * 109.47259 * 59.50929 * 3 2 1 14 14 C 1.46901 * 111.00374 * 85.90187 * 13 3 2 15 15 H 1.09000 * 109.46802 * 327.25588 * 14 13 3 16 16 C 1.53004 * 109.46976 * 87.24976 * 14 13 3 17 17 O 1.42897 * 109.46808 * 65.00028 * 16 14 13 18 18 C 1.50690 * 109.47617 * 207.25185 * 14 13 3 19 19 C 1.38265 * 119.99666 * 139.99836 * 18 14 13 20 20 C 1.38218 * 120.02822 * 179.97438 * 19 18 14 21 21 C 1.38232 * 120.01644 * 0.02562 * 20 19 18 22 22 C 1.38336 * 119.98408 * 0.02562 * 21 20 19 23 23 Cl 1.73598 * 120.01397 * 180.02562 * 22 21 20 24 24 C 1.38192 * 119.99620 * 319.72421 * 18 14 13 25 25 H 1.08998 * 109.46759 * 296.23024 * 1 2 3 26 26 H 1.09000 * 109.46869 * 176.23116 * 1 2 3 27 27 H 1.09001 * 109.47083 * 56.22662 * 1 2 3 28 28 H 1.08998 * 109.46990 * 119.99886 * 2 1 3 29 29 H 1.09004 * 109.46735 * 239.99971 * 2 1 3 30 30 H 0.97005 * 119.99690 * 179.97438 * 8 7 5 31 31 H 1.00899 * 111.00237 * 209.86238 * 13 3 2 32 32 H 1.09000 * 109.47141 * 185.00834 * 16 14 13 33 33 H 1.09003 * 109.46795 * 305.00774 * 16 14 13 34 34 H 0.96706 * 113.99886 * 180.02562 * 17 16 14 35 35 H 1.07998 * 119.98588 * 359.97438 * 19 18 14 36 36 H 1.08002 * 119.99202 * 180.02562 * 20 19 18 37 37 H 1.08002 * 120.00976 * 180.02562 * 21 20 19 38 38 H 1.08011 * 120.00409 * 0.02562 * 24 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1300 1.4425 0.0087 5 6 1.5477 2.1494 -1.2365 6 1 0.9260 3.0277 -1.1449 7 6 1.8908 1.6748 -2.4848 8 7 2.6483 0.6054 -2.5962 9 14 1.2811 2.5514 -4.0174 10 1 2.2630 3.5915 -4.4164 11 1 1.1248 1.5692 -5.1203 12 1 -0.0292 3.1901 -3.7341 13 7 1.5408 2.1384 1.1934 14 6 2.4267 1.9133 2.3434 15 1 2.8657 0.9180 2.2744 16 6 3.5400 2.9629 2.3426 17 8 2.9734 4.2583 2.5496 18 6 1.6323 2.0248 3.6190 19 6 1.8725 1.1491 4.6617 20 6 1.1445 1.2510 5.8322 21 6 0.1754 2.2283 5.9609 22 6 -0.0661 3.1041 4.9177 23 17 -1.2825 4.3321 5.0788 24 6 0.6676 3.0057 3.7487 25 1 -0.3633 0.4542 0.9218 26 1 -0.3633 -1.0255 -0.0676 27 1 -0.3633 0.5713 -0.8542 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 2.8894 0.2712 -3.4744 31 1 1.4238 3.1245 1.0145 32 1 4.2470 2.7433 3.1426 33 1 4.0582 2.9421 1.3838 34 1 3.6230 4.9746 2.5604 35 1 2.6292 0.3851 4.5614 36 1 1.3329 0.5669 6.6464 37 1 -0.3930 2.3081 6.8758 38 1 0.4828 3.6924 2.9356 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154523.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:11 Heat of formation + Delta-G solvation = -56.432626 kcal Electronic energy + Delta-G solvation = -20520.471597 eV Core-core repulsion = 17387.514693 eV Total energy + Delta-G solvation = -3132.956904 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.58198 -38.64143 -37.26864 -37.07879 -34.74517 -33.09316 -31.56166 -31.31005 -28.97606 -27.41786 -25.17862 -24.34345 -23.36464 -21.80322 -20.55630 -18.86382 -18.08262 -17.58928 -16.87311 -16.43579 -16.24302 -15.93387 -15.74587 -15.15962 -14.80746 -14.53057 -14.33141 -14.17337 -13.90402 -13.66230 -13.13239 -12.92420 -12.81552 -12.64344 -12.41235 -12.32258 -12.23957 -12.10230 -11.89623 -11.77842 -11.48066 -11.28647 -10.90686 -10.76057 -10.50930 -9.65623 -9.52221 -8.91501 -8.08337 -6.18876 0.32932 0.51301 1.27369 1.40698 1.43623 1.52643 2.43409 2.79625 3.20734 3.35461 3.74840 3.87852 4.05001 4.21970 4.27450 4.40966 4.47578 4.57515 4.68576 4.73714 4.75085 4.81180 4.91177 4.99569 5.15830 5.32747 5.39981 5.44771 5.49284 5.60000 5.72426 5.75735 5.84636 5.93076 6.00487 6.31726 6.55490 6.81150 6.92524 7.06398 7.49548 8.96409 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.020058 B = 0.004800 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.643006 B = 5831.363421 C = 6063.337681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.098 4.098 3 C 0.226 3.774 4 H -0.027 1.027 5 C -0.520 4.520 6 H 0.051 0.949 7 C 0.021 3.979 8 N -0.914 5.914 9 Si 0.948 3.052 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.670 5.670 14 C 0.123 3.877 15 H 0.087 0.913 16 C 0.061 3.939 17 O -0.574 6.574 18 C -0.051 4.051 19 C -0.122 4.122 20 C -0.106 4.106 21 C -0.122 4.122 22 C -0.052 4.052 23 Cl -0.083 7.083 24 C -0.077 4.077 25 H 0.047 0.953 26 H 0.030 0.970 27 H 0.033 0.967 28 H 0.022 0.978 29 H 0.059 0.941 30 H 0.260 0.740 31 H 0.336 0.664 32 H 0.064 0.936 33 H 0.034 0.966 34 H 0.392 0.608 35 H 0.141 0.859 36 H 0.161 0.839 37 H 0.148 0.852 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.092 2.919 16.555 16.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.137 4.137 3 C 0.117 3.883 4 H -0.010 1.010 5 C -0.559 4.559 6 H 0.069 0.931 7 C -0.178 4.178 8 N -0.553 5.553 9 Si 0.775 3.225 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.301 5.301 14 C 0.012 3.988 15 H 0.105 0.895 16 C -0.019 4.019 17 O -0.382 6.382 18 C -0.052 4.052 19 C -0.141 4.141 20 C -0.124 4.124 21 C -0.140 4.140 22 C -0.078 4.078 23 Cl -0.054 7.054 24 C -0.096 4.096 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.155 0.845 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.241 0.759 35 H 0.158 0.842 36 H 0.178 0.822 37 H 0.166 0.834 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.108 2.066 16.601 16.766 hybrid contribution 1.034 1.372 -1.607 2.353 sum -0.074 3.439 14.994 15.383 Atomic orbital electron populations 1.21294 0.96436 0.98121 1.00564 1.21331 0.95897 0.97875 0.98585 1.18904 0.91026 0.91803 0.86532 1.00967 1.21410 1.31199 1.11741 0.91514 0.93117 1.25521 0.95292 0.95604 1.01397 1.69998 1.37556 1.23698 1.24076 0.85703 0.78754 0.78347 0.79696 1.20370 1.21081 1.19735 1.60626 1.48434 1.16173 1.04852 1.20630 0.90894 0.97584 0.89666 0.89536 1.22691 0.95514 0.84362 0.99284 1.86446 1.39285 1.16612 1.95829 1.19701 0.95903 0.94767 0.94860 1.21382 1.00644 0.98901 0.93164 1.21325 0.94915 0.98041 0.98154 1.21253 0.99523 0.95016 0.98249 1.21074 0.95039 0.94648 0.97050 1.98339 1.54797 1.54355 1.97890 1.20723 0.94783 0.98341 0.95755 0.93392 0.95043 0.94777 0.95911 0.92272 0.93062 0.84544 0.91753 0.94777 0.75929 0.84166 0.82167 0.83385 0.86667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.76 9.52 71.98 0.69 -4.08 16 2 C -0.10 -4.67 5.57 30.60 0.17 -4.50 16 3 C 0.23 10.92 2.09 44.17 0.09 11.01 16 4 H -0.03 -1.44 7.27 -2.39 -0.02 -1.46 16 5 C -0.52 -27.71 7.29 25.60 0.19 -27.52 16 6 H 0.05 2.73 7.60 -2.91 -0.02 2.71 16 7 C 0.02 1.14 5.30 84.65 0.45 1.59 16 8 N -0.91 -51.27 11.32 21.45 0.24 -51.02 16 9 Si 0.95 43.31 29.54 68.60 2.03 45.33 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 N -0.67 -27.42 4.77 -477.18 -2.27 -29.70 16 14 C 0.12 4.14 2.45 44.17 0.11 4.24 16 15 H 0.09 2.97 7.05 -2.39 -0.02 2.95 16 16 C 0.06 1.80 6.69 71.98 0.48 2.28 16 17 O -0.57 -16.18 11.43 -148.98 -1.70 -17.88 16 18 C -0.05 -1.55 4.83 -19.87 -0.10 -1.65 16 19 C -0.12 -3.00 9.67 22.27 0.22 -2.78 16 20 C -0.11 -2.18 10.04 22.26 0.22 -1.96 16 21 C -0.12 -2.74 9.83 22.29 0.22 -2.53 16 22 C -0.05 -1.43 6.32 22.33 0.14 -1.29 16 23 Cl -0.08 -2.16 28.96 -2.72 -0.08 -2.24 16 24 C -0.08 -2.42 8.10 22.29 0.18 -2.24 16 25 H 0.05 2.06 7.71 -2.39 -0.02 2.04 16 26 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.03 1.64 7.10 -2.39 -0.02 1.62 16 28 H 0.02 0.98 7.53 -2.39 -0.02 0.97 16 29 H 0.06 3.17 6.06 -2.38 -0.01 3.15 16 30 H 0.26 14.00 8.31 -92.70 -0.77 13.23 16 31 H 0.34 14.35 6.84 -89.69 -0.61 13.74 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.03 1.14 7.57 -2.39 -0.02 1.12 16 34 H 0.39 7.44 9.12 -74.05 -0.68 6.77 16 35 H 0.14 2.86 8.04 -2.91 -0.02 2.84 16 36 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 37 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 38 H 0.12 4.07 7.07 -2.90 -0.02 4.05 16 Total: -1.00 -60.25 324.70 1.06 -59.19 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: -0.21 Total: 25.73 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: 3.06 Total: -29.41 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -2.03 Total: -80.72 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -1.70 Total: -17.88 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -0.08 Total: -2.24 kcal Total: -60.25 1.06 -59.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154523.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.761 kcal (2) G-P(sol) polarization free energy of solvation -60.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds