Wall clock time and date at job start Fri Apr 10 2020 14:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81396 * 103.00233 * 2 1 4 4 C 1.52995 * 109.47486 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47420 * 54.99642 * 4 3 2 6 6 C 1.53004 * 109.46915 * 295.00372 * 4 3 2 7 7 C 1.50695 * 109.47723 * 175.00306 * 4 3 2 8 8 O 1.21297 * 119.99358 * 0.02562 * 7 4 3 9 9 N 1.34771 * 120.00677 * 180.02562 * 7 4 3 10 10 C 1.40154 * 120.00504 * 179.97438 * 9 7 4 11 11 C 1.40411 * 125.97106 * 0.02562 * 10 9 7 12 12 C 1.35241 * 107.86611 * 179.74212 * 11 10 9 13 13 N 1.34965 * 107.86302 * 0.38043 * 12 11 10 14 14 C 1.46495 * 125.97869 * 179.87777 * 13 12 11 15 15 C 1.50702 * 109.47571 * 124.71943 * 14 13 12 16 16 H 1.08002 * 119.99446 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00072 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 179.72119 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 269.72576 * 19 17 15 21 21 H 1.48499 * 109.47026 * 29.72423 * 19 17 15 22 22 H 1.48496 * 109.47474 * 149.72459 * 19 17 15 23 23 N 1.31221 * 125.97729 * 179.97438 * 10 9 7 24 24 H 1.08997 * 109.46855 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.46903 * 299.99726 * 1 2 3 26 26 H 1.09005 * 109.46807 * 59.99806 * 1 2 3 27 27 H 1.09006 * 109.47036 * 59.99912 * 3 2 1 28 28 H 1.08998 * 109.47164 * 300.00274 * 3 2 1 29 29 H 1.09000 * 109.47473 * 60.00186 * 6 4 3 30 30 H 1.09000 * 109.47151 * 179.97438 * 6 4 3 31 31 H 1.08995 * 109.47357 * 299.99792 * 6 4 3 32 32 H 0.97004 * 119.99445 * 359.97438 * 9 7 4 33 33 H 1.07998 * 126.06914 * 359.97438 * 11 10 9 34 34 H 1.08001 * 126.07068 * 180.26820 * 12 11 10 35 35 H 1.09000 * 109.47378 * 4.71603 * 14 13 12 36 36 H 1.09001 * 109.47153 * 244.71723 * 14 13 12 37 37 H 0.96999 * 120.00128 * 180.27192 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 1 4.1703 1.3951 -0.8409 6 6 4.3172 1.3917 1.3083 7 6 4.0821 3.4028 -0.1231 8 8 3.1954 4.2266 -0.2034 9 7 5.3711 3.7959 -0.1446 10 6 5.6870 5.1565 -0.2602 11 6 4.7659 6.2114 -0.3610 12 6 5.4651 7.3657 -0.4491 13 7 6.7787 7.0578 -0.4147 14 6 7.8884 8.0114 -0.4863 15 6 8.7894 7.8243 0.7072 16 1 8.5582 7.0706 1.4454 17 6 9.9082 8.6160 0.8572 18 7 10.6914 8.4563 1.9015 19 14 10.3077 9.9200 -0.4193 20 1 11.1761 9.3332 -1.4713 21 1 9.0490 10.4127 -1.0343 22 1 11.0155 11.0508 0.2330 23 7 6.8953 5.6673 -0.2922 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8032 2.2371 0.8900 28 1 1.8032 2.2371 -0.8899 29 1 4.0716 0.3335 1.3978 30 1 5.4003 1.5141 1.3086 31 1 3.8895 1.9364 2.1499 32 1 6.0801 3.1371 -0.0800 33 1 3.6900 6.1180 -0.3635 34 1 5.0466 8.3578 -0.5340 35 1 7.4945 9.0278 -0.4884 36 1 8.4564 7.8400 -1.4007 37 1 11.4764 9.0159 2.0091 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117718287.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:05 Heat of formation + Delta-G solvation = 19.503087 kcal Electronic energy + Delta-G solvation = -19299.638234 eV Core-core repulsion = 16204.310607 eV Total energy + Delta-G solvation = -3095.327627 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.28624 -40.84350 -36.32151 -35.75101 -35.14147 -33.04487 -31.01232 -29.90383 -29.09285 -28.10498 -25.65144 -24.16489 -22.53817 -21.56309 -20.69552 -19.11444 -18.44545 -18.14133 -17.18873 -16.88272 -16.70908 -16.24643 -15.84300 -15.56663 -15.07361 -14.82889 -14.63506 -14.44182 -14.27606 -13.91232 -13.88471 -13.77326 -13.31564 -13.00700 -12.94388 -12.66563 -12.39374 -12.27417 -12.18208 -11.82798 -11.65946 -11.45540 -10.99213 -10.88146 -10.80206 -9.79080 -9.13545 -8.64089 -8.37911 -6.48371 0.60953 0.89418 1.32385 1.38595 1.39127 1.44850 1.50315 1.63226 2.19291 2.28516 2.36795 2.94714 3.42931 3.62600 3.77607 3.94450 4.18934 4.23734 4.35601 4.38763 4.49261 4.58638 4.64832 4.77539 4.83371 4.86597 4.88658 4.91908 4.94143 5.13138 5.23970 5.25388 5.86611 5.99446 6.18583 6.39719 6.57482 6.93701 7.06125 7.14647 8.79103 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.047946 B = 0.002850 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.853418 B = 9820.675157 C =10200.403290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.276 6.276 3 C -0.061 4.061 4 C -0.077 4.077 5 H 0.130 0.870 6 C -0.147 4.147 7 C 0.530 3.470 8 O -0.545 6.545 9 N -0.623 5.623 10 C 0.263 3.737 11 C -0.294 4.294 12 C 0.060 3.940 13 N -0.344 5.344 14 C 0.239 3.761 15 C -0.547 4.547 16 H 0.026 0.974 17 C 0.014 3.986 18 N -0.942 5.942 19 Si 0.956 3.044 20 H -0.265 1.265 21 H -0.229 1.229 22 H -0.278 1.278 23 N -0.347 5.347 24 H 0.115 0.885 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.424 0.576 33 H 0.169 0.831 34 H 0.210 0.790 35 H 0.083 0.917 36 H 0.045 0.955 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.762 -13.504 -6.503 24.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.051 6.051 3 C -0.210 4.210 4 C -0.099 4.099 5 H 0.147 0.853 6 C -0.204 4.204 7 C 0.317 3.683 8 O -0.421 6.421 9 N -0.273 5.273 10 C 0.009 3.991 11 C -0.325 4.325 12 C -0.088 4.088 13 N -0.126 5.126 14 C 0.119 3.881 15 C -0.585 4.585 16 H 0.044 0.956 17 C -0.185 4.185 18 N -0.581 5.581 19 Si 0.776 3.224 20 H -0.190 1.190 21 H -0.152 1.152 22 H -0.204 1.204 23 N -0.178 5.178 24 H 0.133 0.867 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.262 0.738 33 H 0.186 0.814 34 H 0.227 0.773 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.268 -13.930 -6.440 23.102 hybrid contribution -0.558 1.418 0.094 1.527 sum -17.826 -12.511 -6.347 22.684 Atomic orbital electron populations 1.23479 0.91733 1.07580 1.05769 1.86756 1.10184 1.09991 1.98131 1.23119 0.97122 0.94605 1.06146 1.20994 0.95694 0.89626 1.03570 0.85252 1.21899 1.01584 1.02979 0.93977 1.21198 0.80563 0.92164 0.74416 1.90616 1.47383 1.55131 1.48953 1.42634 1.09446 1.03437 1.71746 1.19535 0.91970 0.86607 1.01025 1.21757 1.01331 0.89570 1.19868 1.23257 0.83238 1.01979 1.00286 1.48527 1.06496 1.03465 1.54118 1.19905 0.83840 0.87176 0.97167 1.21227 1.09569 1.20088 1.07606 0.95551 1.25929 0.94803 0.99674 0.98097 1.70049 1.15831 1.41315 1.30889 0.85616 0.80514 0.77838 0.78393 1.19042 1.15211 1.20360 1.77319 1.19774 0.90929 1.29751 0.86654 0.89785 0.89797 0.89701 0.89517 0.88975 0.90822 0.92343 0.73845 0.81377 0.77308 0.89900 0.93732 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 10.76 113.37 1.22 0.02 16 2 S -0.28 -4.24 21.19 -56.49 -1.20 -5.44 16 3 C -0.06 -1.06 4.73 71.98 0.34 -0.72 16 4 C -0.08 -1.35 2.72 -11.54 -0.03 -1.38 16 5 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 6 C -0.15 -2.30 8.92 71.98 0.64 -1.65 16 7 C 0.53 13.89 7.12 87.66 0.62 14.51 16 8 O -0.55 -17.47 13.05 -3.08 -0.04 -17.51 16 9 N -0.62 -18.40 5.34 -307.52 -1.64 -20.05 16 10 C 0.26 10.33 8.11 133.33 1.08 11.41 16 11 C -0.29 -11.02 9.61 22.11 0.21 -10.81 16 12 C 0.06 2.21 11.44 83.52 0.96 3.17 16 13 N -0.34 -15.35 3.67 -351.85 -1.29 -16.64 16 14 C 0.24 10.99 5.33 85.63 0.46 11.45 16 15 C -0.55 -31.49 9.79 25.60 0.25 -31.24 16 16 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 17 C 0.01 0.78 5.47 84.65 0.46 1.24 16 18 N -0.94 -58.00 13.96 21.45 0.30 -57.70 16 19 Si 0.96 40.53 27.47 68.60 1.88 42.41 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.23 -8.37 6.54 99.48 0.65 -7.72 16 22 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 23 N -0.35 -16.02 12.42 -54.45 -0.68 -16.70 16 24 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.09 1.60 7.96 -2.39 -0.02 1.58 16 29 H 0.09 1.27 7.13 -2.39 -0.02 1.25 16 30 H 0.07 1.07 7.57 -2.39 -0.02 1.05 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.42 10.29 8.24 -92.71 -0.76 9.53 16 33 H 0.17 6.03 5.92 -2.91 -0.02 6.01 16 34 H 0.21 5.60 8.06 -2.91 -0.02 5.58 16 35 H 0.08 3.31 7.12 -2.39 -0.02 3.29 16 36 H 0.04 1.98 7.57 -2.39 -0.02 1.96 16 37 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -74.96 326.61 3.81 -71.15 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.26 Total: 24.46 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 6.21 Total: -4.00 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -3.31 Total: -111.08 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.04 Total: -17.51 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 1.88 Total: 42.41 kcal Atomic # 16 Polarization: -4.24 SS G_CDS: -1.20 Total: -5.44 kcal Total: -74.96 3.81 -71.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117718287.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.649 kcal (2) G-P(sol) polarization free energy of solvation -74.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds