Wall clock time and date at job start Fri Apr 10 2020 15:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47606 * 2 1 4 4 C 1.38461 * 120.00303 * 179.72719 * 3 2 1 5 5 N 1.29441 * 125.18824 * 179.97438 * 4 3 2 6 6 C 1.33633 * 116.89643 * 179.77511 * 5 4 3 7 7 C 1.47157 * 122.48020 * 180.26846 * 6 5 4 8 8 O 1.21657 * 120.00236 * 173.65693 * 7 6 5 9 9 N 1.34779 * 120.00008 * 353.65477 * 7 6 5 10 10 C 1.46507 * 120.00080 * 183.31469 * 9 7 6 11 11 C 1.53008 * 109.46723 * 85.10589 * 10 9 7 12 12 C 1.46501 * 120.00118 * 3.31591 * 9 7 6 13 13 C 1.50701 * 109.46905 * 83.06181 * 12 9 7 14 14 H 1.08003 * 119.99876 * 0.02562 * 13 12 9 15 15 C 1.37873 * 120.00045 * 180.02562 * 13 12 9 16 16 N 1.31510 * 119.99970 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00115 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47569 * 59.99798 * 17 15 13 19 19 H 1.48503 * 109.47122 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46922 * 299.99613 * 17 15 13 21 21 C 1.35052 * 115.04290 * 0.52119 * 6 5 4 22 22 S 1.76058 * 125.18760 * 0.30048 * 4 3 2 23 23 H 1.09003 * 109.46813 * 299.99954 * 1 2 3 24 24 H 1.09003 * 109.47284 * 59.99833 * 1 2 3 25 25 H 1.08994 * 109.47187 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46813 * 240.00046 * 2 1 3 27 27 H 1.08994 * 109.47471 * 120.00336 * 2 1 3 28 28 H 0.97001 * 119.99703 * 359.97438 * 3 2 1 29 29 H 1.08998 * 109.47172 * 205.10355 * 10 9 7 30 30 H 1.08997 * 109.46936 * 325.11382 * 10 9 7 31 31 H 1.08996 * 109.47035 * 300.00335 * 11 10 9 32 32 H 1.08995 * 109.46870 * 60.00154 * 11 10 9 33 33 H 1.08997 * 109.46665 * 179.97438 * 11 10 9 34 34 H 1.08999 * 109.46953 * 203.06105 * 12 9 7 35 35 H 1.09003 * 109.46893 * 323.06575 * 12 9 7 36 36 H 0.97002 * 120.00103 * 180.02562 * 16 15 13 37 37 H 1.07994 * 125.87304 * 179.75053 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3797 1.6341 0.0057 5 7 3.9198 2.8105 0.0058 6 6 5.2551 2.8626 0.0165 7 6 5.9962 4.1339 0.0237 8 8 7.2063 4.1319 0.1497 9 7 5.3345 5.3005 -0.1094 10 6 6.0782 6.5611 -0.1753 11 6 6.5193 6.8182 -1.6176 12 6 3.8717 5.3081 -0.1882 13 6 3.2935 5.2572 1.2025 14 1 3.9501 5.2231 2.0594 15 6 1.9264 5.2542 1.3810 16 7 1.1269 5.2962 0.3377 17 14 1.2097 5.1919 3.1049 18 1 1.6694 6.3752 3.8753 19 1 -0.2732 5.1982 3.0250 20 1 1.6629 3.9519 3.7849 21 6 5.8741 1.6623 0.0148 22 16 4.6401 0.4049 0.0058 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.3881 2.1185 -0.0004 29 1 5.4392 7.3779 0.1603 30 1 6.9562 6.4989 0.4675 31 1 7.1582 6.0014 -1.9532 32 1 5.6413 6.8803 -2.2605 33 1 7.0722 7.7563 -1.6667 34 1 3.5394 6.2186 -0.6868 35 1 3.5338 4.4399 -0.7541 36 1 0.1650 5.2945 0.4633 37 1 6.9419 1.5009 0.0184 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156717245.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:01 Heat of formation + Delta-G solvation = 8.168723 kcal Electronic energy + Delta-G solvation = -20778.247236 eV Core-core repulsion = 17682.428114 eV Total energy + Delta-G solvation = -3095.819122 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.30081 -39.44977 -37.17296 -36.88814 -34.55225 -32.37085 -31.74665 -29.61234 -28.71320 -26.35147 -24.81487 -24.05824 -23.54059 -21.98539 -19.95981 -19.06299 -18.32269 -17.84057 -17.21552 -16.55738 -16.44764 -16.23022 -16.00222 -15.90574 -15.06722 -14.72698 -14.40657 -14.12429 -13.97825 -13.56069 -13.32914 -13.19775 -13.09212 -12.91816 -12.70739 -12.68995 -12.56879 -12.47448 -12.10554 -11.78928 -11.62543 -11.18390 -11.00769 -10.50776 -10.01019 -9.78738 -9.38203 -8.59703 -7.99956 -6.04778 -0.15228 0.22227 0.70241 1.37092 1.39273 1.40760 1.47619 2.15244 2.40318 2.54243 2.62536 3.30755 3.65424 4.02936 4.14595 4.19309 4.34768 4.40040 4.46831 4.53197 4.55497 4.80725 4.84710 4.93232 5.01625 5.02222 5.14798 5.25600 5.27956 5.57017 5.83051 5.96063 5.98694 6.32109 6.42877 6.58261 6.94200 7.09503 7.37273 7.57583 9.06642 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.011876 B = 0.008907 C = 0.005772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.044598 B = 3142.734030 C = 4849.802737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.113 3.887 3 N -0.694 5.694 4 C 0.325 3.675 5 N -0.498 5.498 6 C 0.043 3.957 7 C 0.577 3.423 8 O -0.589 6.589 9 N -0.584 5.584 10 C 0.106 3.894 11 C -0.150 4.150 12 C 0.247 3.753 13 C -0.499 4.499 14 H 0.026 0.974 15 C 0.040 3.960 16 N -0.910 5.910 17 Si 0.932 3.068 18 H -0.282 1.282 19 H -0.277 1.277 20 H -0.286 1.286 21 C -0.231 4.231 22 S 0.104 5.896 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.103 0.897 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.412 0.588 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.004 0.996 35 H 0.075 0.925 36 H 0.261 0.739 37 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.222 -10.854 -3.033 11.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.010 4.010 3 N -0.336 5.336 4 C -0.049 4.049 5 N -0.223 5.223 6 C -0.090 4.090 7 C 0.364 3.636 8 O -0.473 6.473 9 N -0.313 5.313 10 C -0.016 4.016 11 C -0.208 4.208 12 C 0.126 3.874 13 C -0.538 4.538 14 H 0.044 0.956 15 C -0.159 4.159 16 N -0.550 5.550 17 Si 0.759 3.241 18 H -0.208 1.208 19 H -0.202 1.202 20 H -0.212 1.212 21 C -0.375 4.375 22 S 0.351 5.649 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.121 0.879 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.250 0.750 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.022 0.978 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 0.201 -11.654 -3.041 12.046 hybrid contribution -0.327 1.405 1.146 1.842 sum -0.126 -10.249 -1.896 10.424 Atomic orbital electron populations 1.21928 0.92241 1.04551 1.02692 1.21733 0.96793 0.79979 1.02492 1.44346 0.99903 1.09765 1.79541 1.24946 0.91909 0.90330 0.97739 1.67344 1.08860 1.21293 1.24789 1.19963 0.88459 0.94479 1.06072 1.17550 0.85758 0.83666 0.76621 1.90656 1.14148 1.87890 1.54603 1.48275 1.09775 1.05401 1.67803 1.21509 0.96292 0.85475 0.98374 1.22001 1.01117 1.02337 0.95371 1.19665 0.72801 0.97850 0.97076 1.21198 0.91450 1.49167 0.92028 0.95575 1.25147 0.96839 0.95377 0.98581 1.70000 1.03418 1.51917 1.29708 0.86055 0.77625 0.77919 0.82464 1.20833 1.20183 1.21183 1.26766 1.04563 0.93288 1.12867 1.84096 0.96334 1.09479 1.74958 0.92620 0.91865 0.87851 0.90330 0.91068 0.75019 0.90206 0.91411 0.93732 0.93001 0.89029 0.97807 0.90745 0.92963 0.79173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 10.03 71.98 0.72 -1.96 16 2 C 0.11 2.37 6.31 86.38 0.55 2.92 16 3 N -0.69 -22.09 5.71 -346.95 -1.98 -24.07 16 4 C 0.32 11.92 8.42 179.44 1.51 13.43 16 5 N -0.50 -22.16 5.70 -187.41 -1.07 -23.23 16 6 C 0.04 1.86 6.47 40.48 0.26 2.12 16 7 C 0.58 27.27 7.54 86.58 0.65 27.92 16 8 O -0.59 -28.50 16.32 -4.21 -0.07 -28.56 16 9 N -0.58 -27.32 2.49 -830.28 -2.06 -29.39 16 10 C 0.11 4.17 6.07 86.38 0.52 4.70 16 11 C -0.15 -4.91 10.21 71.98 0.73 -4.18 16 12 C 0.25 12.70 4.74 85.63 0.41 13.11 16 13 C -0.50 -27.43 8.11 25.60 0.21 -27.22 16 14 H 0.03 1.52 7.81 -2.91 -0.02 1.50 16 15 C 0.04 2.13 5.46 84.65 0.46 2.59 16 16 N -0.91 -49.14 13.29 21.44 0.28 -48.86 16 17 Si 0.93 43.27 29.54 68.60 2.03 45.30 16 18 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 21 C -0.23 -8.22 10.84 67.09 0.73 -7.50 16 22 S 0.10 3.01 22.62 -56.49 -1.28 1.73 16 23 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.41 14.91 8.60 -92.71 -0.80 14.11 16 29 H 0.08 3.06 8.03 -2.39 -0.02 3.04 16 30 H 0.07 2.66 7.53 -2.39 -0.02 2.64 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.00 0.21 8.02 -2.39 -0.02 0.19 16 35 H 0.08 4.04 5.27 -2.39 -0.01 4.02 16 36 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 37 H 0.19 6.10 8.02 -2.91 -0.02 6.07 16 Total: -1.00 -64.93 327.89 2.89 -62.04 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.28 Total: 19.11 kcal Atomic # 6 Polarization: 19.17 SS G_CDS: 6.76 Total: 25.93 kcal Atomic # 7 Polarization: -120.72 SS G_CDS: -4.83 Total: -125.55 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.07 Total: -28.56 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -1.28 Total: 1.73 kcal Total: -64.93 2.89 -62.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156717245.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.209 kcal (2) G-P(sol) polarization free energy of solvation -64.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds