Wall clock time and date at job start Fri Apr 10 2020 14:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.36541 * 127.14122 * 90.02260 * 3 2 1 5 5 S 1.76202 * 126.48421 * 0.02562 * 4 3 2 6 6 C 1.80995 * 99.99647 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47246 * 179.97438 * 6 5 4 8 8 H 1.09009 * 109.46895 * 60.00068 * 7 6 5 9 9 O 1.42898 * 109.47376 * 300.00358 * 7 6 5 10 10 C 1.50698 * 109.47402 * 179.97438 * 7 6 5 11 11 H 1.07992 * 120.00396 * 0.02562 * 10 7 6 12 12 C 1.37882 * 119.99660 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00278 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 119.99573 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.46918 * 90.00391 * 14 12 10 16 16 H 1.48500 * 109.46750 * 210.00302 * 14 12 10 17 17 H 1.48503 * 109.47254 * 330.00266 * 14 12 10 18 18 N 1.31289 * 107.02698 * 180.02562 * 4 3 2 19 19 N 1.28517 * 109.85955 * 359.97438 * 18 4 3 20 20 C 1.30301 * 110.07717 * 359.72242 * 19 18 4 21 21 C 1.50707 * 126.34286 * 180.30660 * 20 19 18 22 22 C 1.53004 * 117.49293 * 8.78052 * 21 20 19 23 23 C 1.52998 * 117.49745 * 300.16037 * 21 20 19 24 24 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00146 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00128 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99674 * 2 1 3 28 28 H 1.08996 * 109.47853 * 240.00016 * 2 1 3 29 29 H 1.09000 * 109.47709 * 300.00229 * 6 5 4 30 30 H 1.09003 * 109.47458 * 60.00266 * 6 5 4 31 31 H 0.96703 * 114.00032 * 300.00018 * 9 7 6 32 32 H 0.97001 * 119.99576 * 179.97438 * 13 12 10 33 33 H 1.08995 * 115.54784 * 154.48486 * 21 20 19 34 34 H 1.08996 * 117.49998 * 359.97438 * 22 21 20 35 35 H 1.09000 * 117.49271 * 145.02153 * 22 21 20 36 36 H 1.09003 * 117.49843 * 214.97553 * 23 21 20 37 37 H 1.08997 * 117.50076 * 359.97007 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2936 2.1584 1.0884 5 16 2.1292 1.6896 2.7790 6 6 2.6690 3.2187 3.5829 7 6 2.6080 3.0454 5.1019 8 1 3.2631 2.2269 5.4007 9 8 1.2663 2.7490 5.4940 10 6 3.0581 4.3183 5.7713 11 1 3.3572 5.1663 5.1733 12 6 3.0869 4.4006 7.1473 13 7 2.7221 3.3680 7.8756 14 14 3.6440 5.9787 7.9771 15 1 2.4715 6.8630 8.1968 16 1 4.2723 5.6559 9.2834 17 1 4.6313 6.6717 7.1108 18 7 2.7039 3.3209 0.6369 19 7 2.7017 3.3156 -0.6482 20 6 2.2991 2.1578 -1.0901 21 6 2.1642 1.7510 -2.5349 22 6 2.7227 2.7053 -3.5925 23 6 1.2099 2.5644 -3.4116 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.6923 3.4451 3.2835 30 1 2.0137 4.0371 3.2845 31 1 0.6271 3.4357 5.2594 32 1 2.7427 3.4259 8.8437 33 1 2.2400 0.6816 -2.7312 34 1 3.1872 3.6274 -3.2433 35 1 3.1661 2.2636 -4.4849 36 1 0.6582 2.0300 -4.1851 37 1 0.6793 3.3933 -2.9434 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331809279.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:23 Heat of formation + Delta-G solvation = 43.658710 kcal Electronic energy + Delta-G solvation = -19631.958416 eV Core-core repulsion = 16537.678256 eV Total energy + Delta-G solvation = -3094.280160 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.74740 -37.36999 -35.99832 -35.69840 -32.20123 -30.66708 -30.45463 -29.61397 -25.46846 -24.63514 -23.84502 -22.75494 -22.25784 -20.99811 -20.01623 -17.67288 -17.22099 -16.61376 -16.00261 -15.58543 -14.82166 -14.66108 -14.51546 -14.35278 -14.11595 -13.70455 -13.29755 -12.73574 -12.54805 -12.39939 -11.82682 -11.69237 -11.58303 -11.38048 -11.27411 -11.18681 -10.94949 -10.90408 -10.81306 -10.50683 -10.19404 -10.15976 -9.85096 -9.41517 -9.20198 -8.65233 -8.34876 -7.21323 -6.08506 -4.27794 1.47111 1.71420 2.59002 2.79485 2.87920 3.26852 3.33773 3.38122 3.65222 4.08505 4.32595 4.36017 4.54908 4.59560 4.67919 4.76448 4.93048 5.18993 5.24839 5.31650 5.36899 5.39569 5.56157 5.73050 5.82510 5.86681 5.90755 5.97238 6.04487 6.11384 6.18811 6.69231 6.79818 7.51935 7.76214 8.01825 8.73695 8.82241 9.25299 9.48186 10.95664 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.030295 B = 0.003742 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.027949 B = 7481.299517 C = 8180.543407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.104 3.896 3 N -0.464 5.464 4 C 0.166 3.834 5 S -0.009 6.009 6 C -0.111 4.111 7 C 0.244 3.756 8 H 0.067 0.933 9 O -0.560 6.560 10 C -0.568 4.568 11 H 0.062 0.938 12 C 0.081 3.919 13 N -0.858 5.858 14 Si 0.895 3.105 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.272 1.272 18 N -0.296 5.296 19 N -0.286 5.286 20 C 0.199 3.801 21 C -0.082 4.082 22 C -0.150 4.150 23 C -0.159 4.159 24 H 0.080 0.920 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.349 0.651 32 H 0.262 0.738 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.046 -8.180 -19.956 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.158 5.158 4 C -0.208 4.208 5 S 0.221 5.779 6 C -0.260 4.260 7 C 0.184 3.816 8 H 0.084 0.916 9 O -0.362 6.362 10 C -0.608 4.608 11 H 0.080 0.920 12 C -0.126 4.126 13 N -0.493 5.493 14 Si 0.722 3.278 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.196 1.196 18 N -0.139 5.139 19 N -0.126 5.126 20 C -0.070 4.070 21 C -0.103 4.103 22 C -0.188 4.188 23 C -0.197 4.197 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.193 0.807 32 H 0.072 0.928 33 H 0.138 0.862 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.638 -8.442 -19.051 21.153 hybrid contribution 0.092 1.136 -0.256 1.168 sum -3.547 -7.306 -19.307 20.946 Atomic orbital electron populations 1.22146 0.93464 1.03440 1.03678 1.21895 0.96260 0.78844 1.04908 1.46406 1.50753 1.13794 1.04858 1.27383 1.04542 0.91796 0.97063 1.85836 1.83458 1.24345 0.84254 1.24905 1.04767 0.93912 1.02455 1.19254 0.82595 0.97531 0.82174 0.91559 1.86580 1.18462 1.47189 1.84007 1.21502 1.48394 0.99116 0.91779 0.92026 1.25031 0.93811 0.96423 0.97335 1.70077 1.44220 1.29393 1.05588 0.86563 0.79048 0.83316 0.78861 1.20394 1.21033 1.19625 1.74748 1.20307 1.16473 1.02422 1.73845 1.17994 1.17175 1.03566 1.23832 1.03871 0.89111 0.90230 1.20005 1.08767 0.98071 0.83470 1.23021 0.96232 1.01205 0.98292 1.23066 0.93329 1.02226 1.01126 0.90156 0.91871 0.91019 0.88227 0.88781 0.89074 0.89604 0.80659 0.92774 0.86165 0.87177 0.87929 0.87939 0.88194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.24 37.16 0.38 -1.07 16 2 C 0.10 1.01 6.61 -4.04 -0.03 0.99 16 3 N -0.46 -6.63 2.81 -113.53 -0.32 -6.95 16 4 C 0.17 2.97 8.07 -88.33 -0.71 2.25 16 5 S -0.01 -0.16 21.44 -107.50 -2.31 -2.46 16 6 C -0.11 -2.35 4.87 37.16 0.18 -2.17 16 7 C 0.24 6.06 2.87 -27.88 -0.08 5.98 16 8 H 0.07 1.79 8.14 -51.92 -0.42 1.37 16 9 O -0.56 -13.91 12.32 -35.23 -0.43 -14.35 16 10 C -0.57 -15.36 8.76 -34.44 -0.30 -15.67 16 11 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 12 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 13 N -0.86 -24.83 12.84 55.43 0.71 -24.12 16 14 Si 0.90 21.01 29.54 -169.99 -5.02 15.98 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 N -0.30 -5.96 11.60 30.68 0.36 -5.60 16 19 N -0.29 -5.22 11.79 33.00 0.39 -4.83 16 20 C 0.20 2.88 7.59 -153.99 -1.17 1.72 16 21 C -0.08 -0.81 5.99 -91.77 -0.55 -1.36 16 22 C -0.15 -1.30 10.15 -26.73 -0.27 -1.57 16 23 C -0.16 -1.32 10.23 -26.73 -0.27 -1.59 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.10 0.97 7.86 -51.93 -0.41 0.56 16 28 H 0.09 0.65 7.43 -51.93 -0.39 0.27 16 29 H 0.09 1.96 8.14 -51.92 -0.42 1.54 16 30 H 0.09 1.83 8.14 -51.91 -0.42 1.40 16 31 H 0.35 7.76 9.04 45.56 0.41 8.17 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.12 0.87 7.53 -51.93 -0.39 0.47 16 34 H 0.11 1.17 7.92 -51.93 -0.41 0.76 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 333.56 15.07 5.03 5.03 Total: -1.00 -32.68 333.56 -9.05 -41.73 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -4.53 Total: 5.95 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -2.92 Total: -10.37 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 1.14 Total: -41.51 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.43 Total: -14.35 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.31 Total: -2.46 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.68 -9.05 -41.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331809279.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.389 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds